LOCUS       NM_001402259            2636 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus integrator complex subunit 9 (Ints9), mRNA.
ACCESSION   NM_001402259 XM_008770801
VERSION     NM_001402259.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2636)
  AUTHORS   Jodoin,J.N., Sitaram,P., Albrecht,T.R., May,S.B., Shboul,M.,
            Lee,E., Reversade,B., Wagner,E.J. and Lee,L.A.
  TITLE     Nuclear-localized Asunder regulates cytoplasmic dynein localization
            via its role in the integrator complex
  JOURNAL   Mol Biol Cell 24 (18), 2954-2965 (2013)
   PUBMED   23904267
REFERENCE   2  (bases 1 to 2636)
  AUTHORS   Baillat,D., Hakimi,M.A., Naar,A.M., Shilatifard,A., Cooch,N. and
            Shiekhattar,R.
  TITLE     Integrator, a multiprotein mediator of small nuclear RNA
            processing, associates with the C-terminal repeat of RNA polymerase
            II
  JOURNAL   Cell 123 (2), 265-276 (2005)
   PUBMED   16239144
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Mar 9, 2022 this sequence version replaced XM_008770801.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2812484.1,
                                           SRR26360194.1430169.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-288               JAXUCZ010000015.1  43376235-43376522
            289-416             JAXUCZ010000015.1  43400973-43401100
            417-477             JAXUCZ010000015.1  43407708-43407768
            478-540             JAXUCZ010000015.1  43410250-43410312
            541-680             JAXUCZ010000015.1  43412846-43412985
            681-767             JAXUCZ010000015.1  43415357-43415443
            768-888             JAXUCZ010000015.1  43429060-43429180
            889-1023            JAXUCZ010000015.1  43429800-43429934
            1024-1135           JAXUCZ010000015.1  43438035-43438146
            1136-1316           JAXUCZ010000015.1  43441390-43441570
            1317-1377           JAXUCZ010000015.1  43447351-43447411
            1378-1549           JAXUCZ010000015.1  43449386-43449557
            1550-1674           JAXUCZ010000015.1  43452958-43453082
            1675-1842           JAXUCZ010000015.1  43454701-43454868
            1843-1941           JAXUCZ010000015.1  43457325-43457423
            1942-2079           JAXUCZ010000015.1  43458388-43458525
            2080-2636           JAXUCZ010000015.1  43459993-43460549
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..2636
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /note="integrator complex subunit 9"
                     /db_xref="GeneID:290322"
                     /db_xref="RGD:1311539"
     exon            1..288
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     CDS             280..2256
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /codon_start=1
                     /product="integrator complex subunit 9"
                     /protein_id="NP_001389188.1"
                     /db_xref="GeneID:290322"
                     /db_xref="RGD:1311539"
                     /translation="MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLV
                     QSPRLSNLPGWSLKDGNAFLDKELKECSGHVFVDSVPEFCLPETELIDLSTVDVILIS
                     NYHCMMALPYITEHTGFTGTVYATEPTMQIGRLLMEELVNFIERVPKAQSASLWKNKE
                     IQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGY
                     ALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPTANPDG
                     MVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNIPFYFISPVAN
                     SSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYRSIHGDFSHDFRQPCV
                     LFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDT
                     RLNFIQVSKLLKEVQPLHVVCPEQYTQPPPAQSHRMDLMIDCQPPAMSYRRAEVLALP
                     FKRRYEKIEIMPELADSLVPMEIKPGISLATVSAVLHTKDNKHVLQPPPKPTQPTSSK
                     KRKRVSEDVPDSKVLKPLLSGSIPVEQFVQTLEKHGFSDIKVEDTAKGHIVLLQEAET
                     LIQIEEDSTHIICDNDETLRVRLRDLVLRFLQKF"
     exon            289..416
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            417..477
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            478..540
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            541..680
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            681..767
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            768..888
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1023
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1135
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..1316
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1377
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1549
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1550..1674
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1675..1842
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..1941
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            1942..2079
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
     exon            2080..2636
                     /gene="Ints9"
                     /gene_synonym="RGD1311539"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgatatcatg ctgggatgga aaggaaggat gaattggcgg cggcgatgga tttgagcgga
       61 cggaaggagg tgtttagaga gaaaagggag ggaaaggaaa gacgcccaca gtgcccatga
      121 tatctactgt aaaactacat ttcccgtgag gctctggaaa gtgcgtgaga aggaaagact
      181 ccaagtcccg cgatgctctc ggctatagag attaaaccgg aagatccttc cttgtcttga
      241 gaagtgaaga gactgctact gtacaaccaa aagtccgata tgaaactgta ctgcctgtca
      301 gggcacccaa ctttaccatg caatgtgctc aaattcaaat ccaccactat tatgttggac
      361 tgcggactgg acatgacttc taccctcaat ttccttcctt tgcctcttgt tcaaagcccc
      421 aggctatcta atcttcctgg atggtctctg aaagatggaa atgctttttt ggacaaggag
      481 ctaaaagagt gctcaggtca tgtatttgtg gattctgtgc ctgaattctg cttaccagag
      541 actgagctaa tagacctgtc tacagtcgat gtgatcctca tctctaacta tcactgcatg
      601 atggcgctgc cctacatcac cgagcacaca ggattcacgg gcacagtgta tgccacagag
      661 cccaccatgc agatcggcag gcttctcatg gaagagctgg tgaatttcat cgaaagagtg
      721 cctaaggccc agtctgcctc cttgtggaag aataaggaaa tacagcggct gctgccttct
      781 cctctcaagg atgcagtaga agtgtcaacc tggagaagat gctacacaat gcaggaggtg
      841 aactctgccc tcagtaaaat ccagctggtg ggatactctc agaaaattga actttttggt
      901 gctgtccagg tgacccctct gagctctggc tatgcccttg gaagctccaa ctggattatc
      961 cagtcccatt atgagaaagt atcttatgtc tccggatcct ccttgcttac cacacaccct
     1021 cagcccatgg accaagcttc tctcaagaac agtgacgttc tgattctcac agggctgaca
     1081 cagatcccta ctgcaaaccc ggacggcatg gtgggcgagt tctgcagcaa cctcgctctg
     1141 acagttcgga atggaggaaa tgtgttggtt ccctgctacc cttcaggcgt gatctatgac
     1201 ctcctggagt gcttatatca atacattgac tccgctggcc tctccaacat ccccttctac
     1261 ttcatctccc cagtggccaa cagttcactc gagttttccc agatttttgc tgagtggctt
     1321 tgtcacaaca aacagagtaa agtttatctc ccagaaccac cttttccgca cgcagagctc
     1381 attcagacca ataagctgaa gcactaccgc agcatccacg gagacttcag ccatgacttc
     1441 agacagccgt gtgtgctgtt cacggggcat ccttccctcc ggtttgggga cgtcgtccac
     1501 ttcatggagc tttgggggaa gtccagcctc aacaccgtca tatttacaga acccgatttc
     1561 tcctacctgg aggccttggc tccttaccag ccactggcca tgaagtgcat ctactgtcca
     1621 attgacactc gactgaattt catccaggtg tcaaagctgc ttaaagaagt gcagcccctg
     1681 cacgtggtct gtcctgagca gtacacccag ccacccccag cccagtctca caggatggac
     1741 ctcatgatcg actgccagcc accagccatg tcctatcggc gggctgaggt ccttgccctg
     1801 cccttcaaac gacgctatga gaaaattgaa atcatgccag agctggcgga ctccctggtg
     1861 cccatggaga tcaagcctgg catctccttg gcgactgtct cggctgtgct gcacactaag
     1921 gataacaaac atgtgcttca gccccctccc aagcccaccc agcccaccag cagtaagaag
     1981 aggaagcggg tgagcgagga cgttcctgac agcaaagtgc tgaagcctct gctgagcggc
     2041 tccatcccag tagaacagtt tgtgcagacc ctggaaaagc atggcttcag tgacattaag
     2101 gtagaagaca cagccaaggg ccatattgtc ctgctgcagg aagctgagac gctcatccag
     2161 attgaagaag actcaactca tatcatctgt gacaatgacg agacactgag ggtacgatta
     2221 cgggacctcg tcctcaggtt cctacagaag ttctgagggg cacccatgaa atcctaggcc
     2281 cttcacccag agacagtctg gtggtgtcct ctggcttcca gagaggaggg gggtctccag
     2341 ccaggatctg ccagtctgac ttccttgcac tgctgacctc aagaactttt ggagccctgt
     2401 tcttttcagt tctgtgctcc tcggcagctg tggatgacag cgtggtgaca gatgtccttt
     2461 cctaagggaa gtgaaaatgg ctggcctatg ttttcagggc tcactgggga taactcttgg
     2521 actcagccgc ctacagtgct atgcctaata aaggtcagtc cccaaattag gaagtgaacc
     2581 tatctagctc tgttctgtgg cccattttgc taaaaataaa cattattttt atagga
//
