LOCUS       XM_056985543            3888 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus integrator complex subunit 8 (Ints8),
            transcript variant X1, mRNA.
ACCESSION   XM_056985543
VERSION     XM_056985543.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427841.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3888
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3888
                     /gene="Ints8"
                     /note="integrator complex subunit 8; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 24
                     ESTs, 3 long SRA reads, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 158 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:297823"
                     /db_xref="RGD:1310592"
     CDS             146..3133
                     /gene="Ints8"
                     /codon_start=1
                     /product="integrator complex subunit 8"
                     /protein_id="XP_056841523.1"
                     /db_xref="GeneID:297823"
                     /db_xref="RGD:1310592"
                     /translation="MSAEAADREAATSSRPCTPPQTCWFEFLLEESLLEKHLRKACPD
                     PAPVQLIVQFLEQASKPSVNEQNQVQPPPDNKRNRSLKLLALKVAAHLKWDLDILEKS
                     LSVPVLNMLLNELLCVSKVPPGTKHVDVDLAALPPTTAMAILLYNRWAIRTIVQSSFP
                     VKQAKPGPPQLNVMNQMQQEKELTENILKVLREQAADSILVLEAALKLNKDLYVHTMR
                     TLDLLAVEPGTVNGETENSTAGLKIRTEEMQCQVCYDLGAAYFQQGSTNSAAYESARE
                     KFFRTKELIAEIGSLSLHCTIDEKRLAGYCQACDVLVPSSDTNSQQVTPYSQVHICLR
                     SGSYQEVVQIFIEDNVTFTLPVQFRQSVLRELFQKAQQGNEALDEICFKICSCNTVRD
                     ILEGRTISVQFNQLFLRPNKEKIDFLLEVCSRSIDIEKASDSLKGNMAAFLKNVCLGL
                     EDLQYVFMISSHELFITLLKDEERKLLVDQMRKRSPRVNLCIKPVTSFYDIPASASVN
                     IGQLEHQLILSVDPWRIRQILIELHGMTSERQFWTVSNKWEVPSVYSTVILGIKDNLT
                     RDLVYILMAKGLHCSTVKDFPHSKQLFTAGLELVTEFSPKLRQVMLNEILLLDILTHE
                     AGVGHSGERPPSDLISRVRGYLEMRLPDIPLRQVVAAECVAFMLNWRENEYLTLQVPA
                     FLFQNNPYVKLGQLLAATCKELPGPKESRRTAKDLWEVVVQICSVSNQHKRGNDGRVS
                     LIKQRESTLGIMYRSELLSFIKKLREPLVLTIILSLFVKLHNVREDIVNDITAEHISI
                     WPSSIPNLQSVDFEAVAITVREVVRYALSVNPNSHAWLIIQADIYFATNQHSAALHYY
                     LQAGAVCSDFFNKAVPPDVYTDQVIKRMIKCCSLLNCHTQVAILCQFLREIDYKTAFK
                     SLQEQNSHDAMDSYYDYIWDVTILEYLTYLHHKRGETDKRQIAIKAIGQTELNASNPE
                     EVLQLAAQRRKKKFLQAMAKLYF"
ORIGIN      
        1 cgggggacaa gctccggcag actactgcgc catcttgggc agtgcgagcg gtctagacgt
       61 tccgggcggt ttcgctggat taagggcccg ggcgagggtc aggttggagc cgggaggcgg
      121 cgggagcagc ggcggcgggg gcaggatgag cgcggaggcg gcggaccggg aggcggccac
      181 ctccagccgg ccctgcaccc cgccgcagac ctgctggttc gagttcctgc tggaggagtc
      241 gctgctagag aagcatctgc gcaaagcctg cccggatccc gccccagtcc agcttattgt
      301 tcagttcttg gagcaggctt ccaaaccttc agtgaacgag caaaaccaag tccagccgcc
      361 acctgacaac aagaggaatc gcagcctgaa gcttctcgct ctcaaggttg ctgcacatct
      421 aaagtgggat ttagatatac tggagaaaag cctgtctgtt ccggtgttga acatgctgct
      481 gaacgagctg ctgtgcgtca gtaaagtccc ccctgggacc aagcacgtgg acgtggacct
      541 ggctgccctt cccccaacca ctgccatggc tatcctcctc tacaacagat gggcaattag
      601 gacaattgtt caaagtagtt ttcctgtcaa acaggctaaa cctggacctc ctcaactaaa
      661 tgtcatgaac cagatgcaac aggaaaaaga actgacagag aacattttga aagtgctaag
      721 agaacaagct gctgattcta ttttggtcct ggaagcagcc ctgaaattaa acaaggatct
      781 gtatgttcac acaatgagaa ctttggactt actggctgtg gaaccaggca ctgtgaatgg
      841 ggaaactgag aattctacgg ctgggttgaa aatcagaact gaggagatgc agtgccaggt
      901 gtgttatgat ttgggcgcag cctacttcca gcagggctcc acaaattcag ctgcctatga
      961 gagcgctcga gagaagtttt ttagaactaa agaactaatt gcagagatag gttcattatc
     1021 tcttcattgt accatagatg agaagcggtt agctggctac tgtcaagcgt gtgatgttct
     1081 tgtaccttcc tctgatacta actctcagca ggtgactcca tacagtcaag tccatatttg
     1141 tttgcggtct ggcagctatc aggaggtggt gcagattttc atcgaagata acgtaacttt
     1201 cactttacct gtccagttcc ggcagtcagt attaagggag ctctttcaga aagctcaaca
     1261 gggaaatgaa gctctagatg aaatctgttt taaaatttgt tcctgcaaca cagtacgaga
     1321 tatactggaa ggcagaacaa ttagtgtcca gttcaatcaa ctgtttctca gaccaaacaa
     1381 agaaaaaata gattttctcc tcgaggtatg ttcaagatca atagacatag aaaaagcttc
     1441 agattcttta aaaggaaaca tggctgcttt tctaaagaat gtgtgtctgg ggttggaaga
     1501 tctacagtat gtcttcatga tttcttcaca tgagcttttc ataacattgt tgaaggatga
     1561 agaacgaaag ctgcttgttg atcaaatgag gaagagatcc ccaagagtaa atctgtgcat
     1621 taaacctgtg acttcatttt atgatatccc agcctcagca agtgtcaata ttggccagtt
     1681 ggagcatcag cttatattat cagtggatcc ctggcggatt agacagattt taatagaatt
     1741 acatggtatg acctcagagc gacagttttg gactgtgtca aataagtggg aggtaccttc
     1801 tgtatatagt actgttatcc taggaattaa ggacaattta acaagagatt tggtttacat
     1861 tctcatggcc aaaggtttgc actgcagtac tgtcaaggat tttccccatt cgaaacagct
     1921 gtttacagcc ggtttggagt tggtaacaga gttctcaccg aagctccgcc aggttatgtt
     1981 gaatgagata ctcctcttgg atattctcac ccatgaagct ggagtggggc actcaggaga
     2041 gagacctcct tctgacctca tcagtagggt acgaggatat ttggaaatga ggcttcctga
     2101 tattcccctt cgccaggtgg tggctgcaga gtgtgtcgct ttcatgttaa actggagaga
     2161 gaatgagtat cttactctgc aagttcctgc atttttattt cagaataatc cgtatgtaaa
     2221 gcttggacag ctcttagcag ccacctgcaa agagcttcca ggtcctaaag agagtagacg
     2281 gactgctaaa gacctttggg aagttgttgt tcagatctgc agcgtgtcta accagcacaa
     2341 acgaggaaat gatggcagag tcagtctcat aaagcagagg gagtccacgc tgggcataat
     2401 gtatcggagt gaactacttt cttttatcaa aaaattacgg gaaccactgg ttttgactat
     2461 tattttatca ctctttgtga agcttcacaa tgttcgggag gacattgtga atgacatcac
     2521 agctgagcac atttccatct ggccgtcttc cattcctaac ctgcagtctg tggattttga
     2581 agctgtggca atcactgtga gagaggtcgt tcgatacgca ctcagtgtca acccaaacag
     2641 ccacgcgtgg ctgattattc aagcagacat ttactttgcc accaaccagc attcagcagc
     2701 tcttcactat tacctccagg caggggctgt gtgctctgac ttcttcaata aggctgtgcc
     2761 ccctgatgta tacacagacc aggtgataaa acggatgata aaatgctgtt ccttgctgaa
     2821 ttgtcataca caggtggcaa ttttatgtca gttcctcaga gaaattgact acaaaacagc
     2881 cttcaagtca ttgcaggaac agaacagcca tgatgctatg gactcctact atgactacat
     2941 ttgggatgtc acaatcttgg agtacttgac ttatcttcat cataaaagag gagaaactga
     3001 taaaaggcaa atcgcaatca aagccattgg ccaaacagaa ttgaatgcaa gcaaccctga
     3061 agaagtacta cagctggcag cacagagaag gaaaaagaag tttctacaag caatggcaaa
     3121 actttacttt taagcagtta gttaattttt tttaatttta ttttttaaac tatgggctaa
     3181 aagtaaacag tattaaaaga ttaagtttat ataatacata tgtacaattt agtggtgctt
     3241 tctttttaac caaaacaaac tgaaacaaat tagtttataa acaaaaagta tacaaaaact
     3301 tcatatctta acaatagttt ataatttttc aaagagagac aaaggttcac atgtctgata
     3361 atctggcagt ctggtaccac ttttatccaa tgaaattaac attttttagg cccaaatttc
     3421 cttttcaaag gctaacttaa aatatttaat gtataagtag ctattctata tacagcaagt
     3481 ttaaataaat aaatttctag gagtcagtat acatttaata tttttctgcc ataagaaaat
     3541 agaagtttag gtcatatgtt aagttttacc atgttgacac agtcctcatc tcataatatt
     3601 aaaaatggac caccagtttt acaaacataa agcgccttag ggatatctta gtgtaataaa
     3661 gtgactttct tatatagttt gaaaaagtgt ttaattttac ccaaattgtg atacacaaaa
     3721 ggattataaa gcaacctttc tatcaagtaa aacccccccg agtagaagaa gccaaagcat
     3781 ttatcttgta tataatttct ttggttctcc catttagagc acagtttaaa catttggttc
     3841 agtgccttag tgattaagaa atattaaggc aaacaaacta gttaaaaa
//
