LOCUS       XM_039100548            3585 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus integrator complex subunit 6 like
            (Ints6l), transcript variant X1, mRNA.
ACCESSION   XM_039100548
VERSION     XM_039100548.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3585
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3585
                     /gene="Ints6l"
                     /note="integrator complex subunit 6 like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 23 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:681665"
                     /db_xref="RGD:1592872"
     CDS             30..2753
                     /gene="Ints6l"
                     /codon_start=1
                     /product="integrator complex subunit 6-like isoform X1"
                     /protein_id="XP_038956476.1"
                     /db_xref="GeneID:681665"
                     /db_xref="RGD:1592872"
                     /translation="MDLKGNGGRDCSPCLSGYDFTAFVEVGQGGEEVWRWGNAEGLVE
                     VVFSLISASYLKVFRPGTGIGDVEGQVQAGWKENHATFMSELKNLQASGLTTLGQALR
                     SSFDLLNLNRLISGIDNYGQGRNPFFLEPSILITITDGNKLTSTASVQEELHLPLNSP
                     LPGSELTKEPFRWDQRLFALVLRLPGVASPEPEQLGSVPSDESAITQMCEVTGGRSYC
                     VRTQRMLNQCLESLVQKVQSGVVINFEKTGPDPLPVGEDTLMDSCRPNNFFAAQPWHS
                     CHKLIYVRPNSKTGVPVGHWPIPESFWPEQNLPSLPPRTSHPVVRFSCVDCEPMVIDK
                     LPFDKYELEPSPLTQYILERKSPHTCWQVFVTSSSKYNELGYPFGYLKASTTLTCVNL
                     FVMPYNYPVLLPLLDDLFKVHKLKPNLKWRQAFDSYLKTLPPYYLIPLKKALRMMGAP
                     NLISDNLDCGLSYSVISYLKKLSQQTKLESERVLASVGKKPPQEIGIKVKNHSGSGLP
                     LAHNKSFRKLLKEIIGESAPRLTELNTKEFAGFQVGLLNKDLKPQTYRNAYDIPRRGL
                     LDQLTRMRSNLLQTRKFIVGQDEDSLHSVPVAQMGNYQEYLKMLASPLREIDPDQPKR
                     LHTFGNPFKQDKKGMMIDEADEFVVGPQNKVKRPGEPNSPMSSKRRRSMSPLLKKPQI
                     PPTATNHVGGKGPLSTSWFPSCPNLIKHTFVHPDTAVIHDTHEEKMENGQSPADGFLL
                     KSAPAEFMNVSGEGLIPNQLDSLSDDFTGLRKDGFIHKPGNNILLGGAKTCNLSVDDQ
                     KITMASALETVPNSMQITPAMAQGINADIKHQLMKEVRKFGRKYERIFILLEEVQGPL
                     EMKKQFVEFTIKEAARFKRRVLIQYLEKVLEKIDSHHLLNNVNHINSRSSC"
ORIGIN      
        1 atgtttctct tgagctgaag gtgtctgaaa tggatctgaa gggaaatggg ggtagggatt
       61 gtagtccgtg cctgtctggt tatgatttca cagcattcgt cgaagtgggc cagggtggag
      121 aggaagtgtg gaggtggggc aatgcagagg gtttagtcga agttgtcttc tctttaatta
      181 gtgctagcta cttgaaagtg tttcgtcctg gcactgggat tggggatgta gaaggccagg
      241 tgcaggctgg ttggaaggaa aatcatgcca cattcatgag cgaactgaaa aatctccagg
      301 cttctggact gactactctt ggtcaggctc taagatcctc ctttgatttg ttaaatctca
      361 atagattaat atctggaata gacaattatg gacaggggag aaatccattt tttttagagc
      421 cgtctatttt aattaccatc acagatggaa acaagttaac aagtactgct agcgttcaag
      481 aagagcttca tctccctttg aattctcctc tgcccggaag tgaactaacc aaagaacctt
      541 ttcgttggga tcaaaggtta tttgccctgg tgttgcgttt gcctggagtg gcttctcctg
      601 aaccagagca gctagggagt gtgccaagtg atgaatcggc catcacgcag atgtgcgagg
      661 tcacaggagg tcgctcctac tgtgtgagaa cacaaagaat gttaaatcag tgcttagaat
      721 cactagttca aaaagtacag agtggcgtag ttattaattt tgaaaaaaca ggaccggatc
      781 cacttcctgt tggagaagac acactgatgg attcctgtag gccaaacaac ttctttgctg
      841 ctcaaccgtg gcacagttgt cataaactca tctacgtacg acctaattct aaaactggtg
      901 ttcctgttgg acattggcca attccagaat ctttttggcc agaacagaat ttaccttcac
      961 tacctccacg aacatcacat cctgttgtga ggttttcctg tgtcgattgt gagccaatgg
     1021 ttatagataa acttcccttt gacaaatatg aacttgaacc ctctcccttg actcagtaca
     1081 tcttggaaag aaaatctcct catacttgct ggcaggtgtt tgtcaccagc agctcaaaat
     1141 acaatgagct tggatatcca tttggttatt taaaagctag tacgacttta acttgtgtaa
     1201 acctctttgt gatgccttac aactacccag ttttacttcc tcttttagat gacttgttta
     1261 aagttcacaa gcttaagcca aatctgaagt ggcgacaggc ttttgacagc tacttaaaaa
     1321 ctctgcctcc atactactta ataccattaa agaaagcact aaggatgatg ggagctccaa
     1381 atctgatatc agataattta gattgtggac ttagttacag tgttatctct taccttaaaa
     1441 aactcagcca acagaccaaa ctagagtcag aacgagttct agcatcagtg gggaagaagc
     1501 ctccccagga aattggtatc aaagtgaaaa atcactctgg aagtggccta cccttggctc
     1561 acaataagag ttttaggaaa ctgttgaaag aaatcatagg ggaaagcgca ccaagactca
     1621 cagaactgaa taccaaagag tttgctggct tccaagtagg actcttaaac aaggatttga
     1681 aaccgcagac atatagaaat gcttatgaca ttccacgaag aggactttta gaccaattga
     1741 ccagaatgag atccaatctg ctgcagaccc ggaagtttat tgttggacag gatgaagatt
     1801 cacttcatag tgtcccagtt gcacaaatgg gtaactatca ggaatatcta aagatgctgg
     1861 cttctccgct tcgagagatc gacccagatc aaccgaaacg actgcatact tttggcaatc
     1921 catttaagca agataagaag ggaatgatga ttgatgaagc agatgagttt gtagtagggc
     1981 cacaaaacaa agtgaaacgt cctggtgaac ccaacagtcc tatgtcatct aagcgaaggc
     2041 ggagtatgtc cccgctgttg aagaaaccac aaataccacc tactgcaact aaccatgtgg
     2101 gcggaaaggg accactctcc acctcgtggt tcccatcttg tccaaacctc ataaaacaca
     2161 cctttgtaca tccagacact gctgtcattc atgataccca tgaagagaag atggaaaatg
     2221 ggcaaagccc agctgacggc ttcttattaa aatctgctcc agcagagttt atgaatgtgt
     2281 caggagaagg ccttataccc aaccagttgg attctctatc tgatgacttt actggtctca
     2341 ggaaagatgg attcattcac aaacctggta ataatatcct tctaggagga gccaaaacct
     2401 gcaatctttc tgtagatgac caaaaaatca caatggcatc agctttggaa acggtgccaa
     2461 attcaatgca aatcactcct gcgatggccc aaggcatcaa tgctgacata aagcatcaat
     2521 taatgaagga agttcgaaag tttggaagaa agtatgaaag gattttcatt ttgcttgaag
     2581 aagtgcaggg acctctggag atgaagaaac agtttgttga atttaccatc aaggaagctg
     2641 caaggtttaa aagaagagtc ttaattcagt accttgagaa ggtactagaa aaaatagatt
     2701 cccaccacct tcttaacaat gtgaatcaca tcaacagcag atcatcatgt taatggcaag
     2761 ccaagtgagg aaaaagaaca gcttttttgt gttttcagat gcaatggggt gtaaccaaag
     2821 ccctctacaa tgtttgagtg acagagtgac ataagtcagg ctatgagaaa gctcttgact
     2881 agagctttta gcaattatct ggaaggaaga tctgggcttt tgccttaaga gttatggttg
     2941 gaaatatttt ttttcatttt gttgttcatt tttccaatta ggaaaagtga tgctaggcca
     3001 cagagcactg ctgctcccta ctacagctag tagcgttcac tcatttgggc tttgccatcc
     3061 caggcgcttt cagagtgagt aggggctggc cacctgcgag gcgagcacta cccactgtcc
     3121 tcactgtgtc ctatagaact cataagcata gagagtccac gtggtgatca tgtgctcaat
     3181 gaacttttca acaatcccta gctgtgcctt ttaaaccatg caatattcag gatagttgga
     3241 atgaaagagt gaaaagctgc tatttcggta acttacttct ctctgggaaa gggcagggga
     3301 gtcagcaaac cgtctacctc gagtgctctt ccactctgtc tgaggctgca ctaacctctg
     3361 acatctgttc ctgcatgtga caacagaaag ccttcaggtg gacttgtaca tgtttgtgct
     3421 ttggaagcac taaaaggaaa aaataatatg tatattttct tcgctgttta tacagaagtt
     3481 tatatggagc agtattgttg tttttatttg taaaaatgta agtgatcaaa gagattttca
     3541 ctttgcatat atgaaataaa accattttat taattttcaa agcta
//
