LOCUS       NM_001271488            4044 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus integrator complex subunit 6 (Ints6), mRNA.
ACCESSION   NM_001271488 XM_003751497
VERSION     NM_001271488.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Jodoin,J.N., Sitaram,P., Albrecht,T.R., May,S.B., Shboul,M.,
            Lee,E., Reversade,B., Wagner,E.J. and Lee,L.A.
  TITLE     Nuclear-localized Asunder regulates cytoplasmic dynein localization
            via its role in the integrator complex
  JOURNAL   Mol Biol Cell 24 (18), 2954-2965 (2013)
   PUBMED   23904267
REFERENCE   2  (bases 1 to 4044)
  AUTHORS   Baillat,D., Hakimi,M.A., Naar,A.M., Shilatifard,A., Cooch,N. and
            Shiekhattar,R.
  TITLE     Integrator, a multiprotein mediator of small nuclear RNA
            processing, associates with the C-terminal repeat of RNA polymerase
            II
  JOURNAL   Cell 123 (2), 265-276 (2005)
   PUBMED   16239144
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Sep 28, 2012 this sequence version replaced XM_003751497.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.52221.1,
                                           SRR26360186.958431.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-336               JAXUCZ010000015.1  41177779-41178114   c
            337-414             JAXUCZ010000015.1  41177385-41177462   c
            415-564             JAXUCZ010000015.1  41176421-41176570   c
            565-654             JAXUCZ010000015.1  41161287-41161376   c
            655-838             JAXUCZ010000015.1  41132690-41132873   c
            839-964             JAXUCZ010000015.1  41130671-41130796   c
            965-1119            JAXUCZ010000015.1  41130015-41130169   c
            1120-1272           JAXUCZ010000015.1  41126109-41126261   c
            1273-1405           JAXUCZ010000015.1  41125540-41125672   c
            1406-1500           JAXUCZ010000015.1  41124217-41124311   c
            1501-1611           JAXUCZ010000015.1  41122596-41122706   c
            1612-1824           JAXUCZ010000015.1  41121398-41121610   c
            1825-1951           JAXUCZ010000015.1  41119916-41120042   c
            1952-2094           JAXUCZ010000015.1  41119150-41119292   c
            2095-2326           JAXUCZ010000015.1  41117583-41117814   c
            2327-2689           JAXUCZ010000015.1  41113722-41114084   c
            2690-2783           JAXUCZ010000015.1  41112880-41112973   c
            2784-4044           JAXUCZ010000015.1  41109125-41110385   c
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..4044
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /note="integrator complex subunit 6"
                     /db_xref="GeneID:361057"
                     /db_xref="RGD:1309480"
     exon            1..336
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     CDS             226..2877
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /note="DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26"
                     /codon_start=1
                     /product="integrator complex subunit 6"
                     /protein_id="NP_001258417.1"
                     /db_xref="GeneID:361057"
                     /db_xref="RGD:1309480"
                     /translation="MPILLFLIDTSASMNQRSHLGTTYLDTAKGAVETFMKLRARDPA
                     SRGDRYMLVTFEEPPYAIKAGWKENHATFMNELKNLQAEGLTTLGQSLRTAFDLLNLN
                     RLVTGIDNYGQGRNPFFLEPAIIITITDGSKLTTTSGVQDELHLPLNSPLPGSELTKE
                     PFRWDQRLFALVLRLPGTVSVESEQLTGVPLDDSAITPMCEVTGGRSYSVCSPRMLNQ
                     CLESLVQKVQSGVVINFEKAGPDPSPAEDGQPDISRPFGSQPWHSCHKLIYVRPNPKT
                     GVPIGHWPVPESFWPDQNSPTLPPRTSHPVVKFSCTDCEPMVIDKLPFDKYELEPSPL
                     TQFILERKSPQTCWQVYVSNSAKYNELGHPFGYLKASTALTCVNLFVMPYNYPVLLPL
                     LDDLFKVHKAKPTLKWRQSFESYLKTMPPYYLGPLKKAVRMMGAPNLIADSMEYGLSY
                     SVISYLKKLSQQAKIESDRVIGSVGKKVVQETGIKVRSRSHGLSMAHRKGFQVLQGIS
                     EDVPHRLLDLNMKEYTGFQVALLNKDLKPQTFRNAYDIPRRNLLDHLTRMRSNLLKST
                     RKFLKGQDEDQVHSVPIAQMGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKG
                     MMIDEADEFVAGPQNKHKRPGEPSMQGIPKRRRCASPLLRGRRQSPAVNSHIGGKGPP
                     APMTQAQPGLIKPLPLHKEATNDSVVDDVVENHVADQLSSDMTTNAMDTEFLTSPANL
                     LEPSTNHTEALGHEHLGNNDLTVGGFLENHEESRSKEQSAEENIPASSLNKGKKLMHC
                     RSHEEVNTELKAQIMKEIRKPGRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKK
                     RMLIEQLENFLDEIHRRANQINHINSN"
     exon            337..414
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            415..564
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            565..654
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            655..838
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            839..964
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1119
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1272
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1405
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1500
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1611
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1824
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1825..1951
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2094
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            2095..2326
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            2327..2689
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            2690..2783
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
     exon            2784..4044
                     /gene="Ints6"
                     /gene_synonym="Ddx26; LRRGT00024"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggccgccc cagcgggcag gcaggccgga ggcgggggta cggccgggtg gacctgggct
       61 ggggagtttc ctctcaacta tcgggggaga aactccccat agccggtgtt ttcctcccgg
      121 gggccgcgtt ccccgccccg catatcggcg gttgccgccg ccgctggtgc ctccacctct
      181 gccatctctt caccacctcg ggccccggtg tccccggcca gcactatgcc catcttactg
      241 ttcctgatag acacgtctgc ctctatgaac cagcgcagcc atctgggcac cacctacctg
      301 gacacggcca aaggcgcggt agagaccttc atgaagctcc gtgcccggga ccctgccagc
      361 agaggagaca ggtatatgct ggtcactttc gaagagccgc cctatgctat caaggctgga
      421 tggaaagaaa accatgcaac gtttatgaat gaactgaaaa accttcaggc agaaggactt
      481 acgactcttg gccaatccct aaggacagct tttgatttgt taaatttaaa tagattagta
      541 actggcatag acaactatgg gcagggaaga aacccttttt tcttggagcc agcaataatt
      601 attacaatca ctgatgggag caagttgacg actactagtg gtgtccaaga tgagctccat
      661 ttacctctta attcaccttt gcctggaagt gaactgacca aggagccttt tcgctgggat
      721 cagagactgt ttgctttagt gctgcggctg cctggcactg tgtcagtaga atccgagcag
      781 ttgacaggtg tgcctttgga tgactctgct atcacaccca tgtgtgaagt gacaggaggc
      841 cggtcatact ctgtatgttc tccaagaatg cttaatcagt gtctggaatc cttggtgcag
      901 aaagtacaaa gtggggtggt aataaacttt gaaaaggcag gaccagatcc ttcccctgcc
      961 gaagatggac agccagatat atcaagacct tttggatctc agccttggca tagctgtcac
     1021 aaactcatat atgtcaggcc aaatcctaaa actggggttc ctataggcca ttggcctgtt
     1081 ccagagtctt tttggccgga tcagaattct cccacactac cacctcgtac atctcatcct
     1141 gtagtgaagt tttcctgtac agactgtgag ccaatggtta ttgacaaatt gccttttgac
     1201 aaatatgagt tggaaccttc accactgact cagtttattc tagaaaggaa atctcctcaa
     1261 acatgttggc aggtgtatgt gagcaatagt gcaaagtata atgaactcgg tcatcccttt
     1321 ggttacttga aagctagtac agcactgacc tgtgtcaact tatttgtgat gccttacaat
     1381 tacccagtcc tccttcctct cttagatgac ttgttcaaag tgcacaaagc aaaaccaaca
     1441 ctgaaatgga gacagtcatt tgaaagttat ttgaagacaa tgcctcccta ctatcttggg
     1501 cctctgaaga aagctgttag aatgatgggc gcacctaatc tgatagcaga cagtatggag
     1561 tatggactca gctacagtgt catttcatac ctcaaaaagt tgagtcagca ggccaaaata
     1621 gaatctgata gagtcatcgg atccgtaggc aaaaaagtag tgcaggaaac tggaattaaa
     1681 gtccgaagcc ggtcacatgg gttgtcaatg gcgcatagga aaggttttca agtgctgcag
     1741 ggtatttcgg aggatgttcc ccacaggttg ctagacctta atatgaagga gtacactggg
     1801 ttccaggttg ctttactaaa taaggattta aagcctcaga cctttagaaa tgcttatgat
     1861 ataccaagac ggaatcttct ggatcattta acaagaatga ggtctaacct tttaaagagc
     1921 acccgcaaat ttcttaaagg ccaggatgaa gatcaagtgc acagtgtacc tatagcacaa
     1981 atggggaatt accaggaata cctcaagcaa gtaccttctc cattgagaga gcttgatcct
     2041 gatcagcctc gaaggttgca tacgtttggc aatcccttta aactggataa aaagggtatg
     2101 atgatagatg aagcagatga gtttgtggct ggacctcaga ataaacacaa gcggcctgga
     2161 gagccaagca tgcaagggat cccgaaaagg cgccggtgtg cctctccact cttgagaggc
     2221 cgaaggcaga gccctgctgt gaacagtcac atcggaggga aaggaccacc tgcacccatg
     2281 acgcaagcac agccaggtct tattaaaccc cttcctctgc ataaagaagc cactaatgat
     2341 tcagtagtag acgatgtggt tgaaaatcat gttgccgacc aactttcatc agacatgaca
     2401 acaaatgcta tggatactga atttttaacc tctccagcca atcttttgga accatcaact
     2461 aatcatacag aggcccttgg tcatgaacat ttaggaaaca atgacctcac tgttggtgga
     2521 tttttagaaa atcatgagga gtcaagaagt aaagaacaaa gtgctgaaga gaatatacca
     2581 gcatcttcac tcaacaaagg aaagaaattg atgcattgta gaagccatga agaggtcaac
     2641 actgaactaa aagcacaaat aatgaaagag atccgaaaac caggaagaaa atatgaaaga
     2701 atcttcactt tactgaagca tgtgcaaggc agtttacaaa caaggctaat atttttacaa
     2761 aatgtcatta aggaagcatc cagatttaag aagcgaatgc tgatagagca actggagaac
     2821 ttcttggatg aaattcatcg gagagccaat cagatcaacc atattaatag caactaaaga
     2881 aaatagaacg cggccactta tttcattatc ttctccaaat acaaagtaaa tacaagactg
     2941 tcgtaatctt gtattcattc tttgacatgc attgttggct atttgaaata ctaaaaacat
     3001 tctacagttc ctttccatca ttttacagtg accttttcat tttagcttat ttttgtaaag
     3061 tgaaaagtat cactaaattt ttttcttttt ttttcctctt ttttttttta acaaactaaa
     3121 actgttcttc agatcctctg cttgtcattg gctcttgcgt gtcagtttcc ctcaggttat
     3181 attttcttaa accaaccttt aaaattgtca gctctgttaa ggttgaactt tgccaaaaaa
     3241 aaaaaaaaaa aaattaaaaa caagttactt tgtaattttt ggggaaaaaa gcacatacat
     3301 taaaaactag gtaatgtttt gtatatacag ttattttgga tatattattg taagttgtac
     3361 aaatgtattt tgaagaatat ttaagaaaag cacttttgtt attccatcaa taaatgctct
     3421 attttactct tgtgtggttt aggaaataat cacatttaaa gtaactactt aaaaacattc
     3481 taaaacaatg gaattctaaa ggccttgctt tttagcatta aaacaataca caccttatta
     3541 tttgttaaac taatgtaatt atgtgttacg tagcctgcac tgtcttttta actatgcgtt
     3601 cctagttttt gttggccatg ccaatatact ccactcttgc ctggataatg gtaatacctc
     3661 agtctgtggc agatagacag atgggcattt taaaaaacaa ttttaaaaat agatgagttg
     3721 gggcattatt ggtttcttaa caactttcaa tctctcttac aggatttaga tgacactcaa
     3781 gtctagccat tagttagggt gtggtagctt taggttacat catatttgga aatgcctagt
     3841 atgccataat ttgacccatg gcttgcttac ctgactttgt aacatggttc agagagcatc
     3901 tcttggttct gctctctgat tcttaactta tttagaagct aactggagag gaaacagact
     3961 taagatgact gtagtccttt tcccccttat ttgcacagga tgaggatatc tggcacttaa
     4021 cattctccat cctcacaggg ctcc
//
