LOCUS       XM_039089967            7172 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus integrator complex subunit 1 (Ints1),
            transcript variant X1, mRNA.
ACCESSION   XM_039089967
VERSION     XM_039089967.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7172
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7172
                     /gene="Ints1"
                     /note="integrator complex subunit 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 52
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 172
                     samples with support for all annotated introns"
                     /db_xref="GeneID:288514"
                     /db_xref="RGD:1308908"
     CDS             258..6935
                     /gene="Ints1"
                     /codon_start=1
                     /product="integrator complex subunit 1 isoform X1"
                     /protein_id="XP_038945895.1"
                     /db_xref="GeneID:288514"
                     /db_xref="RGD:1308908"
                     /translation="MTERASDSRRLLPGDGASSRGARAAGRMNRAKPTTVRRPSAAAK
                     PSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDASASLSGASGLTGLT
                     KRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEG
                     NDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRD
                     ASVNFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTF
                     VDNIQTAFNTKMPPKSVLLQGEGARSGGELGAGSSPHPSLTEEEDSQTELLIAEEKLS
                     PEQEGQLMPRPRYDELTESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTATCGYKEV
                     RLLAVQRLEMWLQNPKLTRPAQDLLMSVCMNCNSHGSEDMDVISHLIKIRLKPKVLLN
                     HYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAM
                     VFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERF
                     VVHITDVLAVSMMLGITAQVKEAGVAWDKGEKRNLEVLRTFQNQIAAIQRDAVWWLHT
                     VVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTL
                     MRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVERIQLIDAVLNLCTY
                     HHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEM
                     VMTNNYSYPPCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSS
                     LLLSQLTSLDPQGPPRRPPPHILDQVKALNQSLRLGHLLCRSRNPDFLLHIIQRQASS
                     QSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADATASGEEDDEGESREQKAKKRQR
                     QQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEG
                     GLRDKEEKEPPMEEDVGEADALQGYQWLLRDLPRLPLFDSVRTTTALALQQAIHMETD
                     PQTISAYLIYLSQHTPVEEQGPHSDLALDVARLVVERSTIMAHLFSKPSCSTASDAVL
                     SALLSVFSRYVRRMRKSKEGEEVYSWSESQDQVFLRWTSGETATMHILVVHAMVILLT
                     LGPPRSGDSEFSELLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVD
                     AALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAQDPQTLEQNIMDKNYMAHLVE
                     VQHERGASGGQTFHSLLTASLPPRRDSTEAPKPESSPEPPPGQGRTRAGTQVPVLGPE
                     DDLAGIFLQIFPLSPDPRWQSSSPRPLALALQQALGQELARVRQGNPEVPGITVRLLQ
                     AMATLLSSPHGGTLALAMHHSHFLSCPLMRQLCQYQRAVPQDTGFSSLFLKVLMQILQ
                     WLDSPAVEDGPLQAQLKLFATRYSARRRISDVRSGLLHLAEALSFHRDLEVANSTARA
                     VIATLRSGEKCTVEPELISKVLRGLIEVRSPHFEELLTALFSATAETCPSPASGPIVV
                     VSSLLLQERDEPLGPSTQDAEGASTEAMRLGPASGLLVDWLETLDPEVVCSCPDLQWK
                     LLFSRRKGKGHISAQVLSFRPYLLALLTHQASWSTLHRCTRVLLSKSREQRLDPSASL
                     DFLWACIHVPRIWQGRDQRTPQKRREELVLHVQGPELLSLVELILSEAETRSQDGDSA
                     ARTLIQTRLPLLLSCCRSNDESIGKVTEHLTSCIQQWGDSVLGQRCRDLLLQLYLQRP
                     EVRVPVPEVLLQSEGATSSSICKLDGLIHRFITLLADTSDSRSSESRVADANMACRKL
                     AVAHPILLLRHLPMIAALLHGRTHLNFQEFRQQNHLAFYLHVLGILELLQPRVFQSEH
                     QGALWDCLRSFIRLLLNYRKSSRQLAPFISKFVQFIHKYVACSAPAAVAFLQKHAEPL
                     HDLSFDNSDLVMLKSLLAGLSLPSRDGRADQGLDEEGEGKRADERSAGSLPLVSVSLS
                     TPLTVADVAPHMKRLSRGQAVEDVLETLSDIDEMSRRRPEVLGFFSTNLQRLMSSAEE
                     SCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHA
                     AVLLHRAFLVGMYGQIDTSAQISEALKILHMEAVM"
ORIGIN      
        1 acttccggtt agtgggaagt cagcacaggg aaggagcgca aatcagtttg cgcttccgga
       61 gcgcccgtgc tgcgggtttg ctgggtgatg cactgtaggt gaggggccct tgcacccagg
      121 tgaattctgt gaattctgct ccctgcggtg gcattcgtct ccgcagtcgg ccgtgtgtgg
      181 gctgcacttg gccctgttct gtgaccccgg taggcggccc tgggcactcg gcccagtggc
      241 cccggcgcga gggatgaatg actgagcgag cgagtgactc ccgccgcctc ctcccaggtg
      301 acggcgcttc gtcgaggggc gcccgggccg cgggcaggat gaatcgagcc aagcccacca
      361 ccgtacggag gcccagcgcg gccgccaagc cctcagggca ccctccccca ggagacttta
      421 ttgctctggg gtccaagggt caagccaatg aatcaaagac agcgtccacc ctgctgaagc
      481 cagccccttc tggactaccc tcagagcgca agagagatgc gtcagcttct ctgtctgggg
      541 cctcggggct gactggcctc actaagcgcc ccaaactgtc ctccactccc ccattgagtg
      601 ccctgggtcg tctggctgag gccgcagttg cagaaaagcg agctatttct ccatcaatta
      661 aggagccatc tgtggtgccc attgaagttc tgcccacagt actgctggac gagatcgaag
      721 ctgccgagct ggagggcaat gacgacagga tcgagggagt gctgtgcggg gctgtaaagc
      781 agctgaaggt gacgagggcc aagcctgaca gcacgctcta cctgagcctc atgtacctgg
      841 ccaagatcaa acccaacatc tttgccacag agggtgtcat cgaggccctg tgcagcctct
      901 tgcggaggga cgcctccgtt aacttcaagg ccaaagggaa cagcctagtg tctgtgctgg
      961 cctgcaacct tctcatggcc gcatacgagg aggacgagaa ctggcctgag atcttcgtga
     1021 aggtatacat cgaagactcg ctgggtgagc ggatctgggt ggacagccct cactgccgca
     1081 ccttcgtgga taatatccag accgccttca acactaagat gccaccaaag agcgtcctgc
     1141 tgcaggggga gggggcacgc agtggtggcg aacttggtgc aggtagcagc ccccacccgt
     1201 cactcacaga agaggaggac agccaaacgg agctgctgat cgccgaggag aagctgagcc
     1261 ctgagcaaga ggggcagctc atgccaaggc ctaggtacga tgaactcaca gagagcgtgg
     1321 aagagtatgt cctggatatg ctccgtgacc agctgaaccg gcgccagccc atcgacaacg
     1381 tgtccaggaa cctcctgcgg ctgctcacag ccacctgcgg ctacaaggag gtgcggttgt
     1441 tggccgtgca gcggctggag atgtggctgc agaaccccaa gttgaccagg ccagcgcagg
     1501 acctgctgat gtctgtgtgc atgaactgca actcgcatgg ctcggaagac atggatgtca
     1561 tctcgcacct gatcaagatc cgcctcaaac ccaaggtgct cctcaaccac tatatgctct
     1621 gtatcaggga gctgctcaac gcacacaagg acaacctggg taccaccatc aagttcgtga
     1681 tcttcaacga gctctccaat gctcggaacc ccaacaacat gcagattctg tacaccgtgc
     1741 tgcagcacag ctccgagctg gcgcccaagt tcctagccat ggtgttccag gatctgctga
     1801 ccaacaagga tgactacctc cgtgcctcca gggccctgct gcgtgagatc atcaagcaga
     1861 ccaagcacga gatcaacttc caggctttct gtctggggct catgcaggag cgcaaggagc
     1921 cacagtacct agagatggaa tttaaggagc ggtttgtggt tcacatcacg gacgtgttgg
     1981 ctgtgtccat gatgctgggc attacagccc aggtgaagga ggctggagtc gcctgggaca
     2041 aaggagagaa gagaaacctc gaggtgctac gcacattcca gaaccagatt gcggctatcc
     2101 agcgtgacgc tgtgtggtgg cttcacactg tcgtcccctc catcagcaaa cttgccccca
     2161 aggattatgt gcattgcctc cacaaggtgc tcttcaccga gcagcccgag acctactaca
     2221 agtgggacaa ctggcctcct gagagtgacc gcaatttctt cctgcgcctc tgttcagagg
     2281 ttcccatcct ggaggacacc ctgatgcgga tcctggtcat tggactgtct cgagagctgc
     2341 cgcttggccc cgcagatgcc atggaactgg ctgaccacct tgtgaagcga gctgcggccg
     2401 tgcaggctga tgatgtggaa gttctgaagg tggagcggat ccagctgata gacgcggtac
     2461 tgaacctgtg cacctaccac catcctgaga acatccagct gcccccgggg tatcagcccc
     2521 caaaccttgc catctctacc ctctactgga aggcctggcc cctactgctg gtcgtggccg
     2581 ccttcaaccc agagaacatt ggtctggctg catgggagga gtatcccacc ctgaagatgc
     2641 tcatggagat ggtgatgacc aataactact cctacccacc gtgcacgctg acggatgagg
     2701 agacaaggac ggagatgatc aaccgtgagc tgcaaatctc tcagcgagag aagcaggaga
     2761 tcctggcctt tgagggtcac ttggccgccg cctccactaa gcagaccatc accgagagca
     2821 gcagcctcct cctgtcccag ctaaccagcc tggaccccca aggccctccc cggagaccac
     2881 cacctcacat cctggaccag gtgaaggccc tcaaccaatc cctgcgcctt gggcacctgt
     2941 tatgtcgcag ccgtaaccca gactttctcc tgcacatcat ccagcgccag gcctcctccc
     3001 agtccatgcc atggctagca gatctggtgc agtccagtga aggctctctg gatgtgctgc
     3061 ctgtgcagtg cctgtgcgaa ttcctgctgc acgatgcagc tgacgccact gcctcagggg
     3121 aggaggatga cgagggcgaa agccgggagc agaaggccaa gaagcgacag aggcaacaga
     3181 aacagcggca gctgctgggc cgcctacagg atctgctgct aggccctaag gcggatgagc
     3241 agaccacatg tgaggtgctt gactacttcc tccggcgtct gggctcctca caggtggcct
     3301 cccgcgtgtt ggccatgaag ggcctgtcac ttgtgctgtc agagggtggt cttcgtgaca
     3361 aggaggagaa agaacccccc atggaggagg atgtcgggga ggcagacgcg ctacagggct
     3421 atcagtggct gctgcgggac ctgcccaggc tgcccctgtt tgacagcgtg aggaccacca
     3481 ctgccttggc tctccagcag gccatccaca tggaaactga cccccagacc atcagcgcct
     3541 atctgatcta cctgtcccag cacacaccgg tggaggagca gggcccacac agtgacctgg
     3601 ccctggatgt ggcccgactg gtcgtggaac gctccaccat catggcgcac ctcttctcaa
     3661 agccttcctg tagcactgcc tccgatgctg tactcagtgc cctgctatcc gtgttttccc
     3721 gctatgtgcg gcgcatgcgc aagagcaagg agggcgagga ggtctacagc tggtcggagt
     3781 ctcaggacca agtgttcttg cgctggacca gtggggagac agccaccatg catatccttg
     3841 tcgtccatgc catggtcatc ctgctgacac tgggcccgcc tcgttctggc gacagtgagt
     3901 tcagtgagtt gctggacatc tggtttccag agaagaagcc gctgcccaca gccttcctgg
     3961 tggacacttc tgaggaggcg ctgctgctgc ccgactggct gaagctgcgc atgatccgct
     4021 ctgaagtccc caggctggtg gatgctgccc tgcaggacct ggagccccag cagctgctgc
     4081 tcttcgtgca gtcctttggt atccccgtgt ccagcatgag caagctgctg cagtacctgg
     4141 accaggcggt agcccaggat ccccagaccc tggagcagaa catcatggac aagaattaca
     4201 tggctcacct ggtggaggtc cagcacgaga gaggtgcttc tggaggccag accttccact
     4261 cgctactcac ggcctccctg ccaccccgac gagacagcac agaggctcct aagccagaaa
     4321 gcagccctga gcccccacca ggccagggca ggactcgggc agggacgcag gttccagtgc
     4381 tcggccctga ggacgactta gctggcatct tcctacagat cttcccactg agcccggatc
     4441 cacggtggca gagctccagt ccgcgccccc ttgccctggc actgcagcaa gccctgggcc
     4501 aagagttggc tcgtgtccgc cagggcaacc ccgaggtgcc cggcatcaca gttcgccttc
     4561 tgcaggccat ggccaccctg ctgagctccc cgcacggggg tacccttgct ctggctatgc
     4621 accacagcca cttcctgtcc tgccctctga tgcgccagct ctgccagtac cagcgtgctg
     4681 tcccgcagga cactggcttc tcctcactct tccttaaagt gctcatgcag attctacagt
     4741 ggctagacag ccctgctgtg gaggatgggc ccttgcaggc ccaactcaag ttatttgcta
     4801 cccgctattc agcaagacgc aggatcagtg acgtgcgcag cgggctcctg cacctggctg
     4861 aggccttaag cttccaccgt gatctggagg tggccaactc caccgcacgg gccgtcatcg
     4921 ccaccctgag gtctggggag aagtgtactg tggagcctga gctcatcagc aaagtcctcc
     4981 ggggcctcat cgaggtgcgc tcaccgcact ttgaagagct gctgacggcg ctcttctcag
     5041 ccaccgcaga gacctgcccc agcccagcct cggggcccat tgtggtggtg agctccttgc
     5101 tgctgcagga aagagatgag cctctgggcc cgagcacgca ggatgcggag ggtgccagca
     5161 cagaggccat gcgcctggga ccagcatctg ggctgctcgt ggactggctg gagacactgg
     5221 accctgaggt tgtctgtagt tgccctgacc ttcagtggaa gctgctcttc tcacggagaa
     5281 agggcaaagg ccacataagt gcccaggtgc tgtccttccg cccctacctc ctggccctcc
     5341 tcacacacca ggccagctgg tccacgctgc accgctgcac ccgtgtcctg ctaagcaaga
     5401 gccgtgagca gaggctcgac ccctcagcct ccctggactt cctctgggcc tgcatccatg
     5461 ttccccggat ctggcagggc cgggaccagc gcactccaca gaagcgacgg gaggagctgg
     5521 tgctccatgt ccagggccca gagctgctca gcctggtgga gcttatcctg tccgaggcag
     5581 agaccaggag ccaggatggg gacagtgctg cacgcaccct catccagacc cggctgcccc
     5641 tgctgcttag ctgctgccgt agcaacgatg agagcattgg aaaagtgact gagcacctga
     5701 ccagctgcat ccaacaatgg ggggacagcg tgctaggcca gcgctgccga gacctgctgt
     5761 tgcaactgta cttacagcgg ccagaggtcc gggtgccagt gcctgaggtc ctgctgcaaa
     5821 gcgaaggtgc caccagtagc agcatctgca agctggacgg gctcatccac cgcttcatca
     5881 cgctcctggc agacaccagt gactccaggt cttctgagag cagagtggct gatgccaaca
     5941 tggcctgtcg gaagctggct gtggcccacc ccatcctgct gctaaggcac ctgcccatga
     6001 ttgcagccct cctgcatggc cgcacacatc tgaacttcca ggagttccgg cagcagaacc
     6061 acctagcctt ctacctacat gtgctgggca tcttggagct gctgcagcca cgagtcttcc
     6121 agagcgaaca ccagggggca ctctgggact gcctgcggtc ctttatccgc ctgctcctga
     6181 actaccgaaa gtcttcccgc caactggccc ccttcatcag caaatttgtt cagttcatcc
     6241 acaaatatgt ggcctgcagc gcaccagcag ccgtggcctt cctgcagaag cacgcagagc
     6301 ccctccatga cctgtccttt gacaacagtg acctggtgat gctgaagtct ttactagcag
     6361 ggctcagtct gcccagccgg gatgggagag ctgaccaagg tctggatgag gaaggtgaag
     6421 gtaagcgggc agatgagcgt tcagctggct ccctacccct ggtcagtgtc tccctctcca
     6481 ccccactgac tgtagctgat gtggctcccc acatgaagag gctgtcccgg ggccaggctg
     6541 ttgaggatgt gctcgagacc ctgagtgaca tagatgagat gtcacggcgg agacctgagg
     6601 tcctgggctt cttctcgacc aacttgcagc ggctgatgag ctcagcggag gagtcctgcc
     6661 gcaacctggc cttcagccta gcactgcgct ccatccagaa caaccccagc attgctgctg
     6721 actttctgcc caccttcatg tactgcctgg gcagccgaga tttcgaggtg gtacagacgg
     6781 ccctcaggaa cctgccagag tacaccctgc tctgccaaga gcatgcggcc gtgctgctgc
     6841 accgagcctt cctcgtgggc atgtacggcc agattgacac cagcgcccag atatcagagg
     6901 ccctgaagat tttacacatg gaggctgtga tgtgaactgc tgggtgacca ggattccacg
     6961 ccacaccaac aaaccttccc tggggtagtc tcgtccctga gccccttgaa gctggacagg
     7021 gatggagagc agctctttcc agccatcgac tagtgctgaa ggtcctcttg agtgctcacc
     7081 ctgtctttgg ggtcacagga gatacggtgg agaggctgtt ctgccagcaa ggcgcactga
     7141 gggcagttga aatgaagcat cgagtgcctg tg
//
