LOCUS       NM_001191809            3076 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus INO80 complex subunit D (Ino80d), mRNA.
ACCESSION   NM_001191809 XM_237220
VERSION     NM_001191809.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Watanabe,S. and Peterson,C.L.
  TITLE     The INO80 family of chromatin-remodeling enzymes: regulators of
            histone variant dynamics
  JOURNAL   Cold Spring Harb Symp Quant Biol 75, 35-42 (2010)
   PUBMED   21502417
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Jul 17, 2010 this sequence version replaced XM_237220.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2922184.1,
                                           SRR23984936.715843.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-218               JAXUCZ010000009.1  71988364-71988581   c
            219-949             JAXUCZ010000009.1  71980268-71980998   c
            950-1058            JAXUCZ010000009.1  71974486-71974594   c
            1059-1283           JAXUCZ010000009.1  71969327-71969551   c
            1284-1393           JAXUCZ010000009.1  71963374-71963483   c
            1394-1527           JAXUCZ010000009.1  71960532-71960665   c
            1528-1745           JAXUCZ010000009.1  71955044-71955261   c
            1746-1903           JAXUCZ010000009.1  71954146-71954303   c
            1904-3076           JAXUCZ010000009.1  71951031-71952203   c
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q32"
     gene            1..3076
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /note="INO80 complex subunit D"
                     /db_xref="GeneID:316440"
                     /db_xref="RGD:1304808"
     CDS             1..3066
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /codon_start=1
                     /product="INO80 complex subunit D"
                     /protein_id="NP_001178738.1"
                     /db_xref="GeneID:316440"
                     /db_xref="RGD:1304808"
                     /translation="MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDK
                     TAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPVDEVKV
                     RHQMDAMAFSLTVPTLALKMPNGLDSMSLSPPGARVPLHYLETELEDPFAFNEEDDDL
                     KKGVTVRKKLQSKLAQNRQRQRETEILKVRQEHFSTPPTPPQQHAHLSPLPTSLKPPA
                     PPQGSVCKSPQPQSTSLPMQGVAPTTHSIAQTRQASHKRPLPLLPSSRAPVSDTPRTD
                     RILMKATAFSPHFSCISRLQRLVKLCTQKHQLDADLFPHLGLDWSEESGEELEDSDQA
                     SPYQVAWSVRETLRQERHTSDDDDAESRSSRVTQLCTYFQQKYKHLCRLERAESRQKK
                     CRHTFRKALLQAASKEPECTGQLIQELRRAACSRDSLSQTKLKEVEPAACSGTVKGEQ
                     CTNQALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKK
                     MDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNL
                     SMPTSVSLPVQASQIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFADVLPRLP
                     DDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLSQSDGVPVQGLSD
                     RGMGVFSTGTDASGIQSLSREVNTDLGELLNGRIVHDSFSSLELDENLLHSATLSNPP
                     TPLAGQIQGQFSAPASVGLTSATLLSQSALGERAFPGQFHGLHDGSHASQRPHPAQLL
                     SKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTSYSGDNMAATFSA
                     EMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSAFSNLLGADGHLLSTSLST
                     PPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELMASTSPKQQLPQFSAA
                     FGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASPPFPTPN"
     exon            1..218
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            219..949
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1058
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1283
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..1393
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1527
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            1528..1745
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            1746..1903
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
     exon            1904..3076
                     /gene="Ino80d"
                     /gene_synonym="RGD1304808"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtatgaag ggaaacatat acacttctct gaggttgaca ataagccctt gtgctcatat
       61 agccccaaac tgtgcaagca gcggcgactc aacggctacg ctttctgtat cagacacgtt
      121 ctggaagaca agactgcccc cttcaagcaa tgtgaatatg tggccaagta taacagccag
      181 cgctgcacca accccattcc caagtcagag gatcgcaggt actgcaacag ccacttgcag
      241 gtactcggct ttatcccgaa aaaagagagg aagaaaaaga atgacccggt agatgaggtg
      301 aaggtcaggc accagatgga cgccatggca tttagcctga cggtacctac cctggccttg
      361 aagatgccca atggactgga tagcatgtcc ctctctccac ctggggcaag ggttcctctc
      421 cactacctgg aaactgagtt ggaagacccc tttgctttca atgaggaaga cgatgaccta
      481 aagaaagggg tgacggtgag aaaaaagttg cagagcaaat tggctcagaa ccggcaacgc
      541 cagagagaga cagagatttt aaaagttcgg caagagcact ttagcacccc tcccacacct
      601 ccacagcagc acgcccacct gtcacctcta cctacttctt taaaacctcc agcgccacca
      661 cagggctcag tctgcaagtc acctcagcct cagagcacca gcctaccaat gcagggagtg
      721 gcccccacca cacactctat agcacaaaca aggcaggcct ctcacaagag gcctctgccc
      781 ctccttccct ccagtcgagc tcccgtctca gacaccccca ggactgaccg aatcctcatg
      841 aaagccaccg ccttctctcc acacttctct tgtataagcc gactgcagag actggtgaaa
      901 ctgtgtaccc aaaagcatca gctggacgcg gatctgtttc ctcacttagg gctggactgg
      961 tctgaggaga gcggagagga gctggaggat tcagatcagg cttcaccata tcaggtcgca
     1021 tggtccgtcc gagaaaccct cagacaggaa agacacacgt cagatgacga cgatgcggag
     1081 agcaggagct ccagggtgac ccaactttgc acttactttc agcagaaata caagcacctc
     1141 tgccgcctgg agcgtgcaga gtcgcgacaa aagaaatgcc ggcatacgtt taggaaggcg
     1201 ctgctgcagg cagccagtaa ggagcccgaa tgtactggtc agctgataca agaacttcgg
     1261 agagctgcgt gtagccgaga cagcctcagc cagaccaagt tgaaggaggt ggagccagca
     1321 gcttgcagtg gaacagtgaa gggtgaacag tgcacaaacc aggccctgcc cttcaccagg
     1381 cattgtttcc agcacatcct cttgaaccgt tctcagcagc tgttctccag ctgcactgcc
     1441 aagtttgcag acggacagca gtgctctgtg ccagtgtttg acattacaca ccagacgccc
     1501 ctgtgcgaag aacatgccaa aaagatggat aatttcctga gaggagataa ctcccgtaaa
     1561 gttcagcacc agcaacagag gaaacctagg aaaaaaacaa agccccctgc acttaccaaa
     1621 aaacacaaga agaagagacg gcgtggacct cgtcgacccc agaagcccat ccctcctgca
     1681 gtgccccaag ggaatctcag catgcccacc agcgtctcac tgccagtgca ggcctcccag
     1741 atccgaagcc cttccacgcc agagctgagt gctgacgagt tgccggatga cattgccaat
     1801 gagatcactg acattccgca cgacttggaa ttgaaccagg aagactttgc agatgtcctg
     1861 ccgcggctgc cggatgattt acaagacttt gatttttttg aaggaaagaa tggagacctc
     1921 ctcccgacca ctgaagaagc tgaagagctt gagcgggcct tgcaagctgt aacttctctc
     1981 gagtgcctga gtacaattgg ggtactttcc cagtcagacg gtgtgccagt ccagggcttg
     2041 tcagatagag ggatgggggt gttctccacg ggtaccgatg cttcgggaat ccagtccttg
     2101 agtcgagaag taaacacgga tctaggggag ctactgaacg gacgtatagt acacgatagc
     2161 ttttctagtc tagagctgga cgagaaccta ctccattctg ctactctgtc caacccacct
     2221 acacccctgg cagggcagat ccaggggcag ttctctgccc cagccagcgt tggccttact
     2281 tctgccactc tgctcagcca gagtgcactt ggggagagag ccttcccagg acagtttcat
     2341 ggacttcatg atggcagcca tgcctctcag aggccacatc ctgcccagct gctgagcaag
     2401 gcagacgacc ttatcacctc acgacagcaa tacagcagtg atcattcaca ctcctcaccc
     2461 catggaagcc attatgatag cgagcacgtg ccgtcgccct acagtgacca tatcacctct
     2521 ccccacacat cttactctgg tgataatatg gcagctacct tttcagcaga gatgcccatc
     2581 atggcccagc acttgctccc cacccagctt gaggtgccac ttggaggagt ggtcaacccc
     2641 agaactcact ggggcaatct ccccgtcaac cttggcgatc cctctgcatt tagcaacctc
     2701 cttggcgcgg atggacacct tctttccact tccctctcca cgccacccac cacatccaac
     2761 tcagagacca cacagcctgc cttcgccacc gttaccccaa gcagttccag tgtgcttccg
     2821 gggttaccac agaccagctt cagtggcatg gggccttctg ctgaactaat ggcctccacc
     2881 tctcccaagc agcaactccc acagttcagc gcagccttcg gccaccagct gagttctcac
     2941 agtggcattc ctaaggacct gcagcccagc cacagctcca tagcccctcc tacaggcttc
     3001 acagtaacag gtgccaccgc tacaagtacc aataatgcat ctcccccctt ccccaccccc
     3061 aactgagcga gtctgt
//
