LOCUS       NM_001017446            2547 bp    mRNA    linear   ROD 04-FEB-2024
DEFINITION  Rattus norvegicus INO80 complex subunit C (Ino80c), mRNA.
ACCESSION   NM_001017446 XM_214605
VERSION     NM_001017446.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Chen,L., Cai,Y., Jin,J., Florens,L., Swanson,S.K., Washburn,M.P.,
            Conaway,J.W. and Conaway,R.C.
  TITLE     Subunit organization of the human INO80 chromatin remodeling
            complex: an evolutionarily conserved core complex catalyzes
            ATP-dependent nucleosome remodeling
  JOURNAL   J Biol Chem 286 (13), 11283-11289 (2011)
   PUBMED   21303910
REFERENCE   2  (bases 1 to 2547)
  AUTHORS   Watanabe,S. and Peterson,C.L.
  TITLE     The INO80 family of chromatin-remodeling enzymes: regulators of
            histone variant dynamics
  JOURNAL   Cold Spring Harb Symp Quant Biol 75, 35-42 (2010)
   PUBMED   21502417
  REMARK    Review article
REFERENCE   3  (bases 1 to 2547)
  AUTHORS   Dou,Y., Milne,T.A., Tackett,A.J., Smith,E.R., Fukuda,A.,
            Wysocka,J., Allis,C.D., Chait,B.T., Hess,J.L. and Roeder,R.G.
  TITLE     Physical association and coordinate function of the H3 K4
            methyltransferase MLL1 and the H4 K16 acetyltransferase MOF
  JOURNAL   Cell 121 (6), 873-885 (2005)
   PUBMED   15960975
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091281.1.
            
            [WARNING] On Mar 21, 2024 this sequence was replaced by
            NM_001017446.2.
            
            On Apr 29, 2005 this sequence version replaced XM_214605.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091281.1, FM090237.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..2547
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /note="INO80 complex subunit C"
                     /db_xref="GeneID:291737"
                     /db_xref="RGD:1310199"
     exon            1..255
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..678
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /codon_start=1
                     /product="INO80 complex subunit C"
                     /protein_id="NP_001017446.1"
                     /db_xref="GeneID:291737"
                     /db_xref="RGD:1310199"
                     /translation="MAAQIPIVAATSTPTVARNSKKRPASPSHNSSGGGYGASKKKKL
                     SASGFAQGVSIEAMSESKMASSELSSGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNR
                     TWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRF
                     STVEEFSYIRRLPSDVVTGYLTLRKATSIVP"
     exon            256..366
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /inference="alignment:Splign:2.1.0"
     exon            367..478
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /inference="alignment:Splign:2.1.0"
     exon            479..546
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /inference="alignment:Splign:2.1.0"
     exon            547..2512
                     /gene="Ino80c"
                     /gene_synonym="RGD1310199"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtttcct ggcatcaaca cggaagtaac atctagccgg aagttttagg gctcgccttg
       61 ggaggggtgg gggcggggag ccgcaggccg actgcgggca gaatggcggc tcaaattcca
      121 atcgtggctg ctacctctac tcccaccgta gctaggaaca gcaagaagag gccggctagc
      181 ccttctcaca acagcagcgg agggggatat ggtgctagta agaagaaaaa actgtcggcc
      241 tccggctttg ctcagggtgt cagcattgaa gccatgagtg agagtaaaat ggcatcctct
      301 gagttaagct cagggcctgt ggagaaagct gccaagcctt tgccatttaa agatcccaac
      361 tttgtgcact ctggccatgg cggtgcagta gctggcaaga agaatagaac ctggaagaac
      421 ctcaaacaga tcctcgctgc tgaaagggcg ttgccatggc aactgaacga tcctaactac
      481 tttagtattg atgctcctcc atcctttaag ccagctaaga agtattctga tgtttctggc
      541 cttcttgcca actacacaga ccctcagagc aagttgcggt tcagcactgt tgaggaattc
      601 tcctacattc gcaggctgcc atcagatgtg gtcacaggtt acctgacact gaggaaagcc
      661 acaagcatcg tcccctgagt ctcgaaaatg gcgatgggat gggaacagcc tcgaaagcgg
      721 actgcacttg tgactttgtt tcatggaaac aaacatttct actgaaagtc tgaaaatgtc
      781 aactctgggc tttgggaaga acgcctggct ttcctgtgag gagtttttcg tttgttttct
      841 tcctctccaa gtgcgacctt cctagttgaa tgaaatcata cttcagttgt tgccttatgt
      901 aaaaattgtt tgataagaac atgtagtaaa attatgcatt taaattaacc caagcaagtc
      961 cctgaatttt gtttgcaagt tgtgaactct cctctaacgt tttcaaagaa tgtgcagtga
     1021 agacacacag gcctgggttg ttctggagcc taacaagcat gctggtcttt ccgtgggtca
     1081 gaagcttctg tgtgttttct gctgtgcagt tgaatgactt tacccatcat ggcctgcctg
     1141 ctggtgactt atttgtctct gctgtatggt gaattgtgac attggcttcc aggggccaaa
     1201 ggagagattc agctctcaaa aggaaaagta tttagctagg ttgaagaaaa cagatttttg
     1261 gagacttagc ctttaagacc actcattgct tttgcagggg acccaggctt ggttcccagc
     1321 actcacatgg tgacccacag ctatctctaa caccagttcc aaggcatcca ataccccctt
     1381 ctgacttcac caggcgagta cataaataca cacaggcaaa ctctcatata tacaaaaata
     1441 atataatttt taaaaattgt atttttttct tacgagcaca ctgatatcaa gactgctctg
     1501 aggtgagtcc ttctgatacc tgctgcatgt cttccccata agagagaagc ttcgaggtgt
     1561 accttaaagt gaccagaatg ttagagattc ctcaccttgc agagctgggg tgaggaagag
     1621 tttcttgcca ctgtggttac ttttcatgca gtgaccaaat gcccatcaaa aaggaataca
     1681 tgcccatctc tgtggggact catgacggca ggagtgggag gcagctggct gaactgtatc
     1741 caccgctatg acacagaaca gacaagtaag actggacggt aacacctcga ggcctccctc
     1801 cagtgaccca ctccctccag aaagggtcta ccattgcaac aaccttccaa cctgccaccc
     1861 acaccgggca ccaattgttc caacatattt tacattcaga tcactacacc atgtctcccg
     1921 agttaaagca cgtatccacc cagacttcaa atgtgctttg taactgttga tggcacctta
     1981 caaagggcca aagtgtttcc catcagatag cacttttctg aacccacgcc tcttgggaag
     2041 agatcacagg gcttgaccca tcatcagata ggctcaggtg gcctatggag aggtcacaat
     2101 gatggcttcc tacatgaaac agtcaagtca atttcccata atgctctcat ctgagagaat
     2161 gcatgaacct tatttgaatc ctggttcaaa cagaaagctt acagtatgta tgagacagtt
     2221 atgaacctga cagactttgc tgtgtgaaga tatttatgaa cattttcagt cagaatgctg
     2281 gtatcatcct gttaagggaa ggggtcatat attagagaca aaggctgaaa catttgtgca
     2341 cagagcgata tgatatctgg gatttgtttt aggatgatgt gggagggagg aaatggatgg
     2401 aagtggtgtt gagacaatat tggccatgag tcagctattg tgtgctaaga agttcctcac
     2461 accagtctac tctgtatgtg tttgaatttc tccacaataa acttaacaag gaaaaaaaaa
     2521 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
