LOCUS       NM_001048233            1168 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus INO80 complex subunit B (Ino80b), mRNA.
ACCESSION   NM_001048233 XM_001066759 XM_575576
VERSION     NM_001048233.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Chen,L., Cai,Y., Jin,J., Florens,L., Swanson,S.K., Washburn,M.P.,
            Conaway,J.W. and Conaway,R.C.
  TITLE     Subunit organization of the human INO80 chromatin remodeling
            complex: an evolutionarily conserved core complex catalyzes
            ATP-dependent nucleosome remodeling
  JOURNAL   J Biol Chem 286 (13), 11283-11289 (2011)
   PUBMED   21303910
REFERENCE   2  (bases 1 to 1168)
  AUTHORS   Watanabe,S. and Peterson,C.L.
  TITLE     The INO80 family of chromatin-remodeling enzymes: regulators of
            histone variant dynamics
  JOURNAL   Cold Spring Harb Symp Quant Biol 75, 35-42 (2010)
   PUBMED   21502417
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC105625.1.
            
            On or before Sep 25, 2006 this sequence version replaced
            XM_575576.2, XM_001066759.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC105625.1, CK481827.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN11044071 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..1168
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /note="INO80 complex subunit B"
                     /db_xref="GeneID:500225"
                     /db_xref="RGD:1562258"
     exon            1..60
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..1079
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /note="high mobility group AT-hook 1-like 4; PAP-1 binding
                     protein; zinc finger, HIT type 4"
                     /codon_start=1
                     /product="INO80 complex subunit B"
                     /protein_id="NP_001041698.1"
                     /db_xref="GeneID:500225"
                     /db_xref="RGD:1562258"
                     /translation="MSKLWRRGSTSGAMEPPEPGETLELSLAGAHGHGVHKKKHKKHK
                     KKHKKKHHQEEEAGPTLQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLM
                     VVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGE
                     LDDNGDLKKEINERLLTARQRALLQKARSQPSPTLPLPVAGGCPAPALTEEMLLKREE
                     RARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRAAAPAPAPMVR
                     YSSGAQGSTLSFPPGVPTPAAVAQRPAPSGPAPRCSVPGCPHPRRYACSRTGQALCSL
                     QCYRINLQLRLGGPEGPGSPLLAT"
     exon            61..253
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /inference="alignment:Splign:2.1.0"
     exon            254..372
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /inference="alignment:Splign:2.1.0"
     exon            373..542
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /inference="alignment:Splign:2.1.0"
     exon            543..1143
                     /gene="Ino80b"
                     /gene_synonym="RGD1562258; Znhit4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccatgagcaa gctgtggcgg cgcgggagca cgtctggggc tatggagccc cccgagccag
       61 gggaaacgct ggagttgagc ctggcaggtg cccacggcca cggagtacac aagaaaaaac
      121 acaagaaaca taaaaagaaa cacaagaaaa agcatcatca ggaagaggag gccggaccga
      181 cgctgcaggc tcctgcgaag ccccaactta aacttaaaat caagctgggt ggacaggtcc
      241 tgggcaccaa gagtgtccct actttcactg tgatcccgga ggggcctcga tcaccttctc
      301 ccctgatggt agtggataat gaagaggaac ctatggaagg cgtgcctctg gagcagtacc
      361 gagcctggct ggatgaagac agtaatctgt ccccctcccc acttcgggac ctaccagggg
      421 atctggaggg ccaggaggaa gaggaggaac agagatggtt agatgccttg gagaagggag
      481 agctagatga caacggagac ctcaagaagg agatcaatga gcggctgctt actgcaagac
      541 aacgagccct gctccagaag gctcggagtc agccgtcacc gactctgcct ctgccggtgg
      601 ctgggggctg cccagcccct gccctcacgg aagagatgct gctgaagcgt gaggagcgtg
      661 cgcggaagcg gcggctgcag gcggcgaggc gggccgagga gcataagaat cagacaattg
      721 agcgcctcac aaagacagct gctcctagcg ggcgaggagg gcgcggggcg gcacggggtg
      781 agcggcgcgg aggccgcgcc gctgccccgg ctcctgcacc catggtgcgc tacagcagcg
      841 gggcacaggg ctccaccttg tcttttcctc ccggcgttcc cacacccgcg gcggtggcac
      901 agcggcctgc cccgtcgggc cccgctccac gctgctctgt ccccggctgc ccccacccgc
      961 gccgttacgc ctgctcccgc accggccagg ccctttgcag cctacagtgc taccgcatca
     1021 acctgcaact acggctggga ggacccgagg gtccagggtc cccactcctg gccacctaag
     1081 gcctctccca cgccgcattc ccactgtcta cccccaccct attaaatttc ctgcggtgcc
     1141 tcaaaaaaaa aaaaaaaaaa aaaaaaaa
//
