LOCUS       NM_001047891            2359 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus inhibitor of carbonic anhydrase (Inhca), mRNA.
ACCESSION   NM_001047891 XM_001069411 XM_236574
VERSION     NM_001047891.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Dec 8, 2020 this sequence version replaced NM_001047891.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.22782.1,
                                           SRR26643297.29652.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-113               JAXUCZ010000008.1  112753755-112753867 c
            114-286             JAXUCZ010000008.1  112748618-112748790 c
            287-395             JAXUCZ010000008.1  112745575-112745683 c
            396-557             JAXUCZ010000008.1  112743817-112743978 c
            558-705             JAXUCZ010000008.1  112741899-112742046 c
            706-761             JAXUCZ010000008.1  112740544-112740599 c
            762-940             JAXUCZ010000008.1  112736675-112736853 c
            941-1112            JAXUCZ010000008.1  112734052-112734223 c
            1113-1255           JAXUCZ010000008.1  112733090-112733232 c
            1256-1346           JAXUCZ010000008.1  112731154-112731244 c
            1347-1403           JAXUCZ010000008.1  112730385-112730441 c
            1404-1559           JAXUCZ010000008.1  112727009-112727164 c
            1560-1701           JAXUCZ010000008.1  112723309-112723450 c
            1702-1766           JAXUCZ010000008.1  112720584-112720648 c
            1767-1951           JAXUCZ010000008.1  112718814-112718998 c
            1952-2138           JAXUCZ010000008.1  112717069-112717255 c
            2139-2359           JAXUCZ010000008.1  112715733-112715953 c
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2359
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /note="inhibitor of carbonic anhydrase"
                     /db_xref="GeneID:315963"
                     /db_xref="RGD:1310507"
     exon            1..113
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..2173
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /note="Inhibitor of carbonic anhydrase-like"
                     /codon_start=1
                     /product="Inhibitor of carbonic anhydrase precursor"
                     /protein_id="NP_001041356.2"
                     /db_xref="GeneID:315963"
                     /db_xref="RGD:1310507"
                     /translation="MRLFVCVLLCVGTLGLCLAVPEKTIRWCIVSDHEATKCSSFRDN
                     MKKVLPAGGPAVACVRKTSHLECIRDISANKIDAVTVDGALVAEADLPHHSLKPIMAE
                     YYGSKDDPQTHYYVVAVVKKGTGFQLNQLQGKKSCHASLGWSAGWYVPLSVLLPSGSR
                     ETAAATFFSSSCVPCADGKMFPRLCQLCSGKGTDKCSCSSGEPYFGYWGALKCLQDGT
                     GDVSFVRHLTVFEVMPRKADRDQYELLCPDNTRRPVDEYEQCYLARVPSHVVVARSVD
                     GKEDSIQELLRVAQEHFGKDKSSTFQLFGSPHGKDLLFTDAACGLLRVPPKMDIGLYL
                     GYELLSAIRNLKRGSEDSRRVKWCAVGQQERAKCDHWSAVSGGALACATEETPEDCIA
                     AVMKGEADAVNLDGGFAYIAGHCGLVPGLGENYLSPHSSERLGSKCVNAALEGYYVVA
                     VVKKSDVGITWNSLQGKKSCHTAVGTSAGWNVPMSLIYNQTGSCKFDEFFSGGCAPGA
                     NPDSRLCALCAGGNEPAHMCAANNDEGYHGSSGALRCLVEKGDVAFMKHPTVLQNTDG
                     KNPESWAKGLKHEDFELLCLDGTRKPVTEAQNCHLDRVPNHAVFSRKDKVDFVQRMLF
                     NQQELFGRNGFEYRMFQMFESSHKDLLFSDDTECLSNLQNKATYKTYLGPQYLTLMDN
                     FRQCLSSELLDACTFHKH"
     exon            114..286
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            287..395
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            396..557
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            558..705
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            706..761
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            762..940
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1112
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1255
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1346
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1403
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1404..1559
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1560..1701
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1702..1766
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1951
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2138
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
     exon            2139..2359
                     /gene="Inhca"
                     /gene_synonym="Aa2-001; LRRGT00077; LRRGT00161;
                     RGD1310507"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccttctggg taaagtgccc taggctaggg gagtataact tgcacgcagt tagttatttc
       61 acagttgaaa atgaggctgt tcgtctgtgt cctgctatgc gtggggaccc tagggctatg
      121 cctggccgtt cctgagaaga ccatacgatg gtgtattgtg tcagatcatg aggccactaa
      181 gtgttccagt ttccgagaca acatgaagaa agtccttcct gcaggtggcc cagctgttgc
      241 ctgtgtgagg aaaacctctc accttgaatg catccgggat atctcagcca ataaaatcga
      301 tgctgtgact gttgatggag ctttggtggc tgaggctgac ctgccccacc acagcctgaa
      361 acctatcatg gcagaatact atggatccaa agatgatcct caaacccatt attatgtcgt
      421 ggccgtggtg aagaagggaa caggcttcca gctaaaccag ctccagggca agaagtcctg
      481 ccatgccagc ctgggctggt ctgctgggtg gtacgtcccc ctcagcgtcc tgcttccttc
      541 tggctctcgg gaaacagcgg cagccacgtt cttctccagc agctgtgtgc cctgtgcgga
      601 tggaaagatg ttccccaggc tgtgccagct gtgttcgggg aaggggacag acaagtgctc
      661 ctgctcctcc ggggaaccat actttggcta ctggggagcc ttaaaatgtc tacaggatgg
      721 cacaggggat gtgagcttcg tgaggcacct gacagtgttt gaggtcatgc caagaaaggc
      781 tgacagggac cagtatgagc tgctctgccc agacaacacc cgcaggccag tggatgagta
      841 tgaacagtgc tacctggccc gggtcccttc tcatgttgtg gtggctcgca gtgtggatgg
      901 caaggaggac tcgatccaag agcttctcag agtggcccag gaacactttg gaaaagacaa
      961 gtcatcaacc tttcagctct ttggctcccc tcacgggaaa gacctgctgt ttactgatgc
     1021 tgcttgtgga cttctaaggg tccctccaaa gatggacatt ggtctatacc tgggatatga
     1081 gcttctttct gccattcgga atctgaagag aggttcagaa gactcccgga gggtgaagtg
     1141 gtgtgcagta ggccaacagg agagggccaa atgcgaccac tggagtgctg tgagtggtgg
     1201 cgctttggcg tgcgctacgg aggagacccc tgaggactgc attgctgctg tcatgaaagg
     1261 agaagcggat gctgtgaacc tggatggagg atttgcctac atcgcaggcc actgcggtct
     1321 ggtgcccggg ctgggagaga actacttgtc tccccatagc agcgagaggc tggggtctaa
     1381 gtgtgtgaac gcagctttgg aaggttatta tgttgtggct gtggttaaga aatcagatgt
     1441 tggcatcacc tggaactctc tgcaaggcaa gaagtcctgc cacacggccg ttggcacttc
     1501 tgcaggatgg aatgtcccca tgagtttaat atacaaccaa actggatctt gcaaatttga
     1561 tgagttcttc agtggcggct gtgccccagg ggctaatcct gactctcgtc tctgtgctct
     1621 gtgtgctggt ggtaacgaac cagcccacat gtgtgctgcc aacaacgatg aggggtatca
     1681 tggctccagc ggagctctca ggtgtctggt tgagaagggg gacgtggcct tcatgaagca
     1741 ccccacggtt ctacagaaca cagatggaaa gaaccccgag tcttgggcta agggtctgaa
     1801 acatgaagac tttgagctcc tctgccttga tggtaccagg aagcctgtga ctgaggctca
     1861 gaactgccac ctagacagag tgccaaacca tgctgtgttc tccaggaaag ataaggttga
     1921 ctttgtccaa agaatgctct tcaaccaaca ggagctcttt ggaaggaatg gatttgaata
     1981 taggatgttc cagatgtttg aatcctcaca taaggacctg cttttcagtg atgacacaga
     2041 atgcttgtct aaccttcaga acaaagcaac ctataaaaca tacctagggc cacagtatct
     2101 taccctgatg gacaacttta gacagtgctt gtcctcagaa ctgctggatg cctgtacatt
     2161 tcacaaacat taaaccattc agctgggggg gtaacccaag gactggggac ccaactgctt
     2221 gcctccatgt ggacctgtgc cgacatctct ataactcagt gtcatagtgg aaacaaacaa
     2281 aaaaatgaat aaaagtatct tcccagaaag cttaactgac tgttcagatt tggaggtaat
     2341 aagacttttt gtattaaaa
//
