LOCUS       NM_023958               3548 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus interphotoreceptor matrix proteoglycan 1 (Impg1),
            mRNA.
ACCESSION   NM_023958
VERSION     NM_023958.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Uehara,F., Ohba,N. and Ozawa,M.
  TITLE     Mucin-like glycoprotein associated with photoreceptor cells in the
            postnatal developing rat retina
  JOURNAL   Ophthalmic Res 34 (2), 63-69 (2002)
   PUBMED   11914607
REFERENCE   2  (bases 1 to 3548)
  AUTHORS   Kuehn,M.H., Wietecki,D.T. and Hageman,G.S.
  TITLE     Molecular characterization of the murine orthologue of the human
            retinal proteoglycan IPM 150
  JOURNAL   Mol Vis 6, 148-156 (2000)
   PUBMED   10958699
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 25, 2020 this sequence version replaced NM_023958.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB047843.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN17050745 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               JAXUCZ010000008.1  90269684-90269903   c
            221-451             JAXUCZ010000008.1  90241360-90241590   c
            452-618             JAXUCZ010000008.1  90235606-90235772   c
            619-647             JAXUCZ010000008.1  90235318-90235346   c
            648-712             JAXUCZ010000008.1  90229748-90229812   c
            713-825             JAXUCZ010000008.1  90222980-90223092   c
            826-978             JAXUCZ010000008.1  90219941-90220093   c
            979-1037            JAXUCZ010000008.1  90210362-90210420   c
            1038-1058           JAXUCZ010000008.1  90206752-90206772   c
            1059-1303           JAXUCZ010000008.1  90205227-90205471   c
            1304-1374           JAXUCZ010000008.1  90203551-90203621   c
            1375-1453           JAXUCZ010000008.1  90202420-90202498   c
            1454-1983           JAXUCZ010000008.1  90153958-90154487   c
            1984-2203           JAXUCZ010000008.1  90150472-90150691   c
            2204-2399           JAXUCZ010000008.1  90130970-90131165   c
            2400-2469           JAXUCZ010000008.1  90126662-90126731   c
            2470-3548           JAXUCZ010000008.1  90123821-90124899   c
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..3548
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /note="interphotoreceptor matrix proteoglycan 1"
                     /db_xref="GeneID:66014"
                     /db_xref="RGD:620499"
     exon            1..220
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..2547
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /note="sialoprotein associated with cones and rods;
                     mucin-like glycoprotein associated with photoreceptor
                     cells"
                     /codon_start=1
                     /product="interphotoreceptor matrix proteoglycan 1
                     precursor"
                     /protein_id="NP_076448.2"
                     /db_xref="GeneID:66014"
                     /db_xref="RGD:620499"
                     /translation="MNLEIKHAILVLWIFLQVQGIKDTSTKTHSSGTKNIDKAPRIET
                     TESTSAVHKASTMKRLFAVAKLRNKRSALFPAVNICLRESLRQILESLQEYYRLRVCQ
                     EIVWEAYRIFLDRVPDTEEYQDWVSLCQKETFCLFDIGKNFSNSQEHLDLLQQRIKQR
                     SFSGRKDDMSPIEILGVPTTAPVLPIDVSSMSLRPFPLPPDDTDLKEVTIKDIQTPIA
                     IRRAELESKPEPTHVTEISSEEKVEFSISLPNHRFKAELTNSRSPYYQELVGQSQLQL
                     QKIFKKLPGFGEIRVLGFRPKKEEDGSSSTEIQLMAIFKRDHAESKGPESDLLSLDSN
                     KIERERIHHGAIEDKQPEAYLTAADLKKLIIRLLDGDQPLVGGTVPFSDEVTEPLFRP
                     VTQSELPKPLTDVTEDVTLSPELPFSEPRLESVDRDGPDLPDSSWSLPVTASTSGVGN
                     LPSFTPSIFALDDQSSPPLMATGPTAFIPTLTLPTLDYSTVRQWPLEVSHWPESSSDR
                     ELTTSSHDTIRDLDEMDVSDTPALSEIAELSGYDSAPDRFLEMTTPIPTLQYVTTSSE
                     TIAAKGHELVVFFSLRVANMPFSYDLFNKSSLEYQALEQRFTDLLVPYLRSNLTGFKQ
                     LEILSFRNGSVIVNSKVRFAKAVPYNLTQAVRGVLEDLRSTAAQELNLEIESFSLNIE
                     PADQADPCKFLDCGKFAQCIKNELTEEAECRCRQGHESHGTLEYQELNLCPPGKTCEA
                     SQGQATPCRPPDHSTNQARQPSVKKLQRQQNKVVKKRNSELSATDFEELDDQDWEGN"
     exon            221..451
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            452..618
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            619..647
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            648..712
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            713..825
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            826..978
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1037
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1058
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1303
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1374
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            1375..1453
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1983
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            1984..2203
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            2204..2399
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            2400..2469
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
     exon            2470..3548
                     /gene="Impg1"
                     /gene_synonym="Mlgapc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcgccttcg tagggtaaac cagggaggcc atctgtactc agccagccgg cacctaggcc
       61 taattatttt tcatatttca gtcattttat ttctttaagt gtgacttggt attgttctga
      121 gacttttcag aattaccagt acacagagcc aggatgaatt tggagattaa acatgctatc
      181 ttggttttgt ggatttttct ccaagttcaa ggaatcaaag atacctctac taaaacacac
      241 agttctggaa ctaaaaacat agacaaagcc ccaagaattg aaacaactga aagcacttca
      301 gcagtgcaca aagcgtcaac catgaaacga ctgttcgctg tggcaaagct tcgaaacaaa
      361 agatcggcac tgttcccagc tgtgaacatc tgtctgcggg aatccttgag gcagatttta
      421 gaaagtcttc aagaatatta tcgactgaga gtatgtcaag aaatagtgtg ggaagcatat
      481 cggatctttc tggatcgcgt tcctgacaca gaggaatatc aagactgggt cagcctctgc
      541 cagaaggaga ccttctgcct ctttgacatt gggaaaaact tcagcaactc ccaggagcac
      601 ctggatcttc ttcagcagag aataaaacag agaagcttct ctgggagaaa agatgatatg
      661 tcccccatag agatactggg agtgcctacc acagcccctg tgttacccat agatgtttcc
      721 agtatgtcac tgaggccctt cccactccct cctgatgaca cagacctcaa ggaggtcacc
      781 atcaaagaca tccagacgcc catagcaata agaagagctg agttggaaag taaaccagag
      841 cctactcacg tgactgaaat ctcatccgag gagaaagtgg agttcagcat ctctctgcca
      901 aaccacaggt tcaaggcaga gctcaccaac tccagatccc catactacca ggaactggtg
      961 ggacagtccc aactgcagtt gcaaaagata tttaagaaac ttccaggatt cggagaaatc
     1021 cgcgtgttag gatttagacc aaagaaagaa gaggatggtt caagctccac agaaatacaa
     1081 ctcatggcca tctttaagag ggaccatgca gaatcaaaag gccctgagag tgatctcctg
     1141 tctctcgatt ccaacaaaat tgaacgtgaa agaatccatc acggagccat agaagacaaa
     1201 caaccagaag cctacctcac agctgcagac ctcaaaaaac tcatcatacg actactagat
     1261 ggagaccagc ccttggtagg agggacagtt ccattcagtg atgaagttac tgagccactc
     1321 ttcagacctg tcacccaatc agagctgccc aagcccctta ctgatgtcac agaggatgtc
     1381 actttgagtc cagagcttcc tttcagtgaa cctaggcttg agagtgtgga cagagatggt
     1441 cctgacctgc ctgacagttc ttggtctctg cctgtaacag cctcgacttc cggagtggga
     1501 aatctacctt cctttacgcc tagcatcttc gctctggatg atcaaagctc ccctcccttg
     1561 atggccactg gcccaacagc attcatcccc acgctcactc tccccactct cgattattct
     1621 accgtccgcc aatggccgct agaagtgtca cattggcctg agtcttccag tgacagagag
     1681 ttgaccacaa gcagccacga cacaatcaga gacctagatg aaatggatgt gtccgacacg
     1741 cctgccttgt cggaaatagc agaactgagt ggatatgact ctgccccgga tcggtttttg
     1801 gagatgacca cgcccatccc gacattacag tatgtcacca ccagctctga gaccattgcc
     1861 gccaagggcc acgagctagt ggtattcttc agtctgcgcg tcgctaacat gccgttctcc
     1921 tatgacttgt tcaataagag ttccctggag taccaagcct tggaacaacg attcacagac
     1981 ctgttggttc catatctacg atcgaatctt acgggcttta agcaactgga aatactcagc
     2041 ttcagaaacg gaagtgtgat cgtgaacagc aaagtgcggt tcgccaaggc cgtaccctac
     2101 aacctcaccc aggcggtgcg cggggtcttg gaggatcttc ggtccactgc agctcaagag
     2161 ctcaacctgg aaatcgaaag cttctctctc aacattgaac cagctgatca ggcagatccc
     2221 tgcaaattcc tagactgtgg caaattcgcc cagtgtataa agaatgagtt gacagaggaa
     2281 gcagagtgtc gctgcagaca gggacatgag agccacggga ccctggaata ccaggaactg
     2341 aacctctgtc ctcctggaaa gacttgtgaa gccagtcaag gacaagcaac cccatgcagg
     2401 ccaccagatc actctacaaa ccaagctcgg caacctagtg ttaaaaagct acaacgtcag
     2461 caaaataagg tggtcaagaa aagaaattct gaactctcag ctacagattt tgaagaattg
     2521 gatgaccagg attgggaggg aaattaaagg ctggaatcat atgcactatg ttttaaaccc
     2581 tgttgaaagg caactttatt tcttaaagaa aaatgtaacc actctgttaa cttctgaaaa
     2641 atggagggag atactcggtg gtcattggaa tacaggcatg tagttaactc tgagaatcaa
     2701 catacttgaa ctagagaaca gtcatgtatt tgatgacagt taagccaggg gagtacacat
     2761 ggttttagtc aaaactcaaa acaatcatgg gaacacatct gactatttgt ggacagtact
     2821 caagtagaaa aaaaattagg gttttttttt cctttaaatt attacttaaa gcttatttcc
     2881 aacaagtaca ccttgttctg taggttgtac agtattgggg gatctagttc ttttatatat
     2941 tagaatatac aattaaagga ttatcatttg ggctagagag atagctaagt ggttaagagt
     3001 atatactgct cttccagaag accagggttt agatcccaac acccacatcg agtggctcac
     3061 atagacctgt aactccagct ccagagaaca caaacaccct cctctggcct ccgtgccctc
     3121 atgcacataa ccacaaatag acacacccac actatttttt taaattaatt gatgttttag
     3181 tcggcagtgg agaggaaggc tagagatatg actcggtgtt taagaacact tgttgctctt
     3241 ccggaggaac cagcagagaa acacaactac tcataattcc agtttaaggg gatccaacac
     3301 cctcttctaa tccactactg ccagtgccag gcagccatgt ggtgcacatg cattcgggca
     3361 ggcaaaatac tcatacacac aagagtttaa aatctaaatt ttaaaaatgt tagttttaaa
     3421 gatgatcact tgtgtgaggg tccggtctct tgtgtatgaa tgtgatatca aaactgtgat
     3481 gagtacatgt atgctccaca ctatagcgct ctctctctct ctctctctct ctctctctct
     3541 ctctctct
//
