LOCUS       NM_001108738            2632 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus ilvB acetolactate synthase like (Ilvbl), mRNA.
ACCESSION   NM_001108738 XM_001074573 XM_343174
VERSION     NM_001108738.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Kitamura T, Seki N and Kihara A.
  TITLE     Phytosphingosine degradation pathway includes fatty acid
            alpha-oxidation reactions in the endoplasmic reticulum
  JOURNAL   Proc Natl Acad Sci U S A 114 (13), E2616-E2623 (2017)
   PUBMED   28289220
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474029.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343174.3, XM_001074573.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760393 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2632
                     /gene="Ilvbl"
                     /note="ilvB acetolactate synthase like"
                     /db_xref="GeneID:362843"
                     /db_xref="RGD:1307988"
     exon            1..479
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     CDS             370..2388
                     /gene="Ilvbl"
                     /EC_number="2.2.1.-"
                     /note="acetolactate synthase-like protein; ilvB (bacterial
                     acetolactate synthase)-like"
                     /codon_start=1
                     /product="2-hydroxyacyl-CoA lyase 2"
                     /protein_id="NP_001102208.1"
                     /db_xref="GeneID:362843"
                     /db_xref="RGD:1307988"
                     /translation="MGAWPCDSMMLARGGLSAEVESCVEEGGFPVGSLINRFFLMETT
                     AAAASAGGFFPSFLLLAFGTLVAAVLGAAHRLGLFYQLMHKVDKTSIRHGGESVAAVL
                     RAHGVRFVFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTGTVGVAAV
                     TAGPGLTNTVTAVKNAQVAQSPVLLLGGAASTLLQKRGALQAIDQMSLFRPLCKFCAS
                     VRRVRDIVPTLRAAMAAAQSGTPGPVFVELPLDVLYPYFMVEKEMIPAQLPKGLMGRV
                     VVWYLQNCLANLFAGAWEPRPEGPLPLDIPQASPQQVQRCVEILSRAKRPLLVLGSQA
                     LLPPTPANKLRAAVETLGVPCFLGGMSRGLLGRNHPLHIRQNRSAALKKADVVVLAGA
                     VCDFRLSYGRVLNRKSSIIIVNRNRDDMLLNSDIFWKPQEAVQGDVGSFMIKLVEGLQ
                     GQTWSSDWVEELRKADQQKEQTYRDKALLPVPQHLNPVRLLQQVEETLPDNALLVVDG
                     GDFVATAAYLVQPRGPLRWLDPGAFGTLGVGAGFALGAKLCQPEAEVWCLFGDGAFGY
                     SLIEFDTFVRHKVPVIALVGNDAGWTQISREQVPRLGSDVACSLAYTDYHKAAMGLGA
                     QGLILSRDNEDQVVKVLRDGQKLCQEGHAVVVNILIGRTDFRDGSISV"
     exon            480..624
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            625..826
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            827..954
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1093
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1205
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1305
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1403
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1404..1540
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1675
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1790
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1791..1960
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1961..2031
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            2032..2103
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            2104..2209
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
     exon            2210..2632
                     /gene="Ilvbl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtagtgtt agccaattag agggagggga gagaagcgac caatgataaa cggctcttgc
       61 gggtagcttt ttcagcaaga ctccagtttg gcgcaggcgc gtcacgctgg actacggggc
      121 gctgcagagc caagtgggca aaaggggcac caccgcacac taccgagtca tgtgacccag
      181 aagcggccga gttcctctgc agtcagggac ctttcctata ggcaaggtca tagggccttg
      241 tttcgggggg tgggtggaag ggaggtctat gtagtggggt tgaaggagca tcctattgca
      301 atgtgacctc ggccggaggc caaaggtcaa gagtccggtt ggggggcgtg ccctaggctg
      361 cgcaacccga tgggggcgtg gccttgcgac tcaatgatgt tagcgcgggg cgggctctct
      421 gctgaggtcg agtcctgtgt tgaggagggt gggttccccg tgggttccct aataaatagg
      481 ttcttcctca tggaaactac tgcggccgct gcatctgccg ggggcttctt cccctcgttc
      541 ctgctcctgg cgtttgggac actggtggct gccgtgctgg gcgccgctca cagactgggg
      601 ctcttctatc agctgatgca caaggtggac aagacaagca tccggcatgg cggagagagt
      661 gtggcagctg tgctccgagc ccacggcgta cgctttgtct tcacgttggt cggtgggcac
      721 atttccccac tgctggtggc ctgtgagaag ctgggcatcc gagtggtaga cacacgccat
      781 gaggtcactg ctgtctttgc tgctgatgct gtggcccgct tgactgggac agtgggcgtg
      841 gcagcagtga cagccggtcc tggcctcacc aacaccgtga ctgcagtgaa gaatgcccaa
      901 gtggcacagt ccccagtcct gcttctgggt ggggctgcca gcaccctgct gcagaaacgg
      961 ggcgcgctcc aggccattga tcagatgtct ctgttcaggc cactctgcaa attctgtgcg
     1021 tctgtgcgaa gggtacggga cattgtacct accctgaggg ctgcaatggc tgccgcccaa
     1081 tcgggcaccc caggcccggt gtttgtggag ctgcctcttg atgtgctgta tccctacttc
     1141 atggttgaga aggagatgat accagcccag ctgcccaagg gcctcatggg tcgagtggtt
     1201 gtctggtact tacagaactg cctggccaac ctctttgctg gggcttggga gcctcgtccc
     1261 gagggacctc tgcccttgga cattccccag gcgtctcccc agcaggtcca acgctgtgtg
     1321 gagatcctga gccgggccaa gaggcctctg ctggtgctgg ggagccaggc cctgctaccc
     1381 ccaacccccg ccaacaagct tagggctgct gtggagaccc tgggtgtccc ctgcttcctc
     1441 ggggggatgt ctcggggcct gctgggccgc aaccaccctc tccacatccg gcagaaccgc
     1501 agcgctgccc tgaagaaagc agatgttgtt gtcctggcgg gtgctgtgtg cgatttccgc
     1561 ctgtcttatg gtcgcgtcct caaccgcaag agcagcatca tcattgtcaa ccggaaccgg
     1621 gatgatatgt tgctcaactc agacatcttc tggaagcccc aggaggctgt gcagggagat
     1681 gtgggctcct tcatgatcaa actggtggaa ggcctgcagg gccagacgtg gtcctcagac
     1741 tgggttgagg agcttcggaa agccgaccag cagaaggagc agacttaccg ggataaggct
     1801 ttgttgcctg tacctcagca cctgaaccca gtacggctgt tacagcaggt ggaggaaact
     1861 ctgcctgaca acgcgcttct tgtggttgac ggcggggact tcgttgccac tgctgcctac
     1921 ttagtacagc ccagagggcc cctgcgctgg ctcgaccctg gggcctttgg gactctggga
     1981 gttggcgcag gttttgcact tggggccaag ctgtgtcagc ccgaggccga ggtttggtgc
     2041 ctgtttgggg atggagcctt tggctacagc ctcattgagt tcgacacgtt cgtcagacat
     2101 aaggtaccgg tgatagcctt ggtagggaac gatgcaggtt ggacccagat ttctcgggag
     2161 caggtgccca ggttgggcag tgatgtggcc tgtagcctgg cttacaccga ttatcacaag
     2221 gcagccatgg gcctgggggc ccagggattg atactctcac gggacaacga ggatcaagtg
     2281 gtcaaggtac ttcgtgatgg ccagaagctg tgccaggagg gccatgctgt cgtggtcaac
     2341 atcctgatcg ggaggacaga tttcagagat ggctccattt ctgtataggg attatacagg
     2401 gttcgtgtgc gtgcctcttt gtacctggac ttcgcgtagc ctacccgggg ttttcatcct
     2461 cgcctgttcc gagctggtcc gacgaggtca aacaagtggg gaatgggagg accaaagctc
     2521 aaagaggcac cttggcaacc ccggtagctc tttccacagg cccagcttgt accctttctc
     2581 tcttctaaaa ttaaatctct tggctatatg agcccaagga ctcagtcaca gc
//
