LOCUS       NM_001410292            3664 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus inflammation and lipid regulator with UBA-like
            and NBR1-like domains (Ilrun), transcript variant 1, mRNA.
ACCESSION   NM_001410292 XM_008772799
VERSION     NM_001410292.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Ambrose,R.L., Liu,Y.C., Adams,T.E., Bean,A.G.D. and Stewart,C.R.
  TITLE     C6orf106 is a novel inhibitor of the interferon-regulatory factor
            3-dependent innate antiviral response
  JOURNAL   J Biol Chem 293 (27), 10561-10573 (2018)
   PUBMED   29802199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Aug 3, 2022 this sequence version replaced XM_008772799.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.124707.1,
                                           SRR22582424.253481.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               JAXUCZ010000020.1  5877616-5877978     c
            364-518             JAXUCZ010000020.1  5852313-5852467     c
            519-716             JAXUCZ010000020.1  5844138-5844335     c
            717-1045            JAXUCZ010000020.1  5827103-5827431     c
            1046-3664           JAXUCZ010000020.1  5811721-5814339     c
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..3664
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /note="inflammation and lipid regulator with UBA-like and
                     NBR1-like domains"
                     /db_xref="GeneID:294154"
                     /db_xref="RGD:1559829"
     exon            1..363
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..1081
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /note="isoform 1 is encoded by transcript variant 1;
                     chromosome 6 open reading frame 106-like; uncharacterized
                     protein C6orf106 homolog"
                     /codon_start=1
                     /product="protein ILRUN isoform 1"
                     /protein_id="NP_001397221.1"
                     /db_xref="GeneID:294154"
                     /db_xref="RGD:1559829"
                     /translation="MEGMDVDLDPELMQKFSCLGTTDKDVLISEFQRLLGFQLNPAGC
                     AFFLDMTNWNLQAAIGAYYDFESPNVSVPSMSFVEDVTIGEGESIPPDTQFIKTWRIQ
                     NSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIADVSVQMCSPSRAGMYQGQWR
                     MCTATGLYYGDVIWVILSVEVGGLLGVTQQLSSFETEFNTQPHRKVEGNFNPFASPQK
                     NRQSDENSLTDPGGSEFDSISKNTWAPVPDQTEQDQDRLSQNSVNLSPSSHANNLSVV
                     TYSKGLHGPYPFGQS"
     exon            364..518
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /inference="alignment:Splign:2.1.0"
     exon            519..716
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /inference="alignment:Splign:2.1.0"
     exon            717..1045
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..3664
                     /gene="Ilrun"
                     /gene_synonym="RGD1310148"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagccagcga gagagggagc gagcggtgcg gcgcgtcgcg gcgcgcgcag cccatgaggc
       61 ggtgagaggc ctggggcctg tctcggagca gcgcgcggcg ccggccagca gcgggccgcc
      121 cttcgtgggc ccgggcccgg gcgcggcggc cgcccgtgga gaagcaggtc ggggcggtgg
      181 aagctgtgcg tccgggcccc ccgccatgga gggcatggac gtggacctag accccgagct
      241 catgcagaag ttcagctgcc tgggcaccac agacaaggac gtgctcatct ccgagttcca
      301 gcggctactc ggctttcagc tcaacccggc cggctgcgcc ttcttcctgg acatgaccaa
      361 ctggaactta caagcggcaa ttggcgccta ttatgacttt gagagcccga atgtcagtgt
      421 gccctccatg tcctttgttg aagatgtcac cataggagaa ggggagtcaa taccccctga
      481 tacccagttc ataaaaacat ggcggattca gaattctggg gcagaagcct ggcctccggg
      541 ggtttgtctt aaatatgtcg ggggagacca gtttggacat gtgaacatgg tgatggtgag
      601 atcactagag ccccaagaga tcgcagatgt cagcgtccag atgtgcagcc ccagcagagc
      661 aggaatgtac cagggacagt ggcggatgtg cactgctact ggactctact atggagatgt
      721 catctgggtg attctcagtg tggaggtggg tggactttta ggagtaacgc agcagctgtc
      781 atcctttgaa acggaattca acacacagcc acatcgcaag gtagaaggaa acttcaaccc
      841 gtttgcctct ccccaaaaga accgacaatc agatgaaaac agcctaacag accctggggg
      901 ttccgagttc gactcgatca gcaaaaatac atgggctcct gttcctgacc aaaccgagca
      961 agatcaggat agactgtcac agaactctgt aaatctgtcc cccagcagtc acgcaaacaa
     1021 cttatcagta gtgacttaca gtaaggggct ccacgggcct taccccttcg gccagtctta
     1081 aacgggtgtc agcaagaaga aaaactaaca aagacagaag gcctgacttt ggggggagag
     1141 ggcaaggggt tcctctggat tgcagaacac atcgcatgga cccctggctc agacccccac
     1201 ctacccccca atcacggaag aagaggaaga aagagactag ttttgagtga actcagtatg
     1261 cgtgtgtgaa tgctgaactg cggagtggtt tgaggcgacc gagaagagat ccacgcagcc
     1321 accttgggtt tggtgatgac gtcagtctaa tgagttgtta ggtcactggg gaaggggaag
     1381 aaatttaaat gggggaaaat aagccatctt tttaaacaaa aattatttta cctacagaga
     1441 ggttgtagtt ttgagcacac gttagtttct ccctccctct tcctgatgtt tatcttctac
     1501 ataaaggaca gcatgctaca ggacagcgcc tgctctgtgc ctgtcacagt aaggctggcg
     1561 tggcatgcct gggactctgc tagtcagggc tgctgggcac gcgctgtgtg ccaccgactg
     1621 cagagtctga ccccgtttgt tcttagggca tctgccagtg agaagatgtc accttcctcc
     1681 tctcttctcc ttaacctctt gttaattcac cccttagaac tggtgtctgt cagccttggg
     1741 gcttcttagc atcagaatct ctctgaggca aggatttcct gtgtggccac agaagctccg
     1801 ggcattccat cccagagggt cctttccata cacttgtgac agctggagtg cagtggctcc
     1861 cgctgcgtgt gcgcacgtgt gcgccatgca cacggggttg tagggcgtct gcaagtgtga
     1921 agtgttccct gcttctcttg tcacacagct cccctccctg ggtctccccc acatgtcctg
     1981 tggctccagc cattacagag tgatggtgca gccccggcag gagccccacc actgaccact
     2041 acccgagagg ccacagtcag gtggaaatga aaagacctgc agtggggcgg ggctgcttag
     2101 tgtgggcagc aggtgcccac tggtgtcccg tggactccac ttgggttgaa gtgtggatgt
     2161 ctccatggga cactcaaacc aggctagaac agctgtctgc caaagataca agaatatgca
     2221 aagtcctcct ctaacccctc cttccctaag tcggtggctt gagagccggg gatttggatt
     2281 tggtgtggtt gcagggtccc ctgcctgcct ccagccccca tgtgctccag ggttgtgagc
     2341 agagcaggga gatcaaggtg tgagtggctg taggtggtct tctagcgcgg gtgcgggtct
     2401 ggtctgcctg cctgtctgtc tctgtctctg gatgtttgag ttccaaaaag tgtgtggtgt
     2461 gtgtgttcct catcttctga gactgttgat tttaaacact tgattgtgaa cgaaaagctt
     2521 ctatgaaaac ccctcacctt tccatatccc caaaaacaaa ccaacaaaag tccctggggc
     2581 aggtggagaa gtctgtggct gggtctccag tgaggtgggt ggacttctgt gtgaccctta
     2641 cttcctctgc acacgtagac ccttgagcca agagcagttc ctaccaggtg cccaagccac
     2701 aagtctcagg gggctttgtc tgaggacctt cttggggcca gacaactgat gccagtctct
     2761 gaggacactg ccaccctcga gcacatgcat gcccagccat tctcctgctc tggccttgga
     2821 gcaggggctc cagacgctct cctggaaccg agaggcttca gcctggcctc actggcttcc
     2881 ccgtctgacc cccctaggac cacacttgct cagtttccag ctgtcgccaa gtgtcctccc
     2941 tctcctcctg tgccccttcc tgcttgtagc agccccactt ggcaaatgta acggctcagg
     3001 taccctggct tccttcccag aaacaagcct tgtctgtgca tcctggagag gtagctcctt
     3061 cagaaggcca gagctggtgc aagccttgac cattctgcag cccttagagc tgtcacacat
     3121 gagcacttgg ccatcttttg gcaggacccc catctgacag cacatgccaa gtttcaggag
     3181 gattgggggg ccatcagtgg gtgcagtctt gggaagaatc tgtgtgtgta cgtgtgtgtc
     3241 tgtgcacgca cgtgtgcatg cctatgtctt tttgacatgg agacaactga atttggaata
     3301 tttgtctaca aagcagcctc ctatcccccc gtgtggactg gctgtagcca taagccaggc
     3361 gcttacaccg agatagctgg tggccaaggt gggaagtgag catgagtgta aagacccgga
     3421 tttagcccag ctcccagcag gaaaggacag aatcatcagg ctcacaggtg cagaccagtg
     3481 tgctctctcc acctgccctc ttaccccttg tttccttggg tgaatgtggg gcagcctgct
     3541 gtccctccct cctggacact gatggctgtc tggtgggggc ttgtggtgcc taggagatga
     3601 agatgaggtt ttccttacca tgtaaatgaa tatttgtatg attaaattaa cacaaaaaaa
     3661 caaa
//
