LOCUS       NM_001127536            2476 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus immunoglobulin-like domain containing receptor 1
            (Ildr1), mRNA.
ACCESSION   NM_001127536 XM_001060982 XM_001063154
VERSION     NM_001127536.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Higashi,T., Katsuno,T., Kitajiri,S. and Furuse,M.
  TITLE     Deficiency of angulin-2/ILDR1, a tricellular tight
            junction-associated membrane protein, causes deafness with cochlear
            hair cell degeneration in mice
  JOURNAL   PLoS One 10 (3), e0120674 (2015)
   PUBMED   25822906
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Chandra,R., Wang,Y., Shahid,R.A., Vigna,S.R., Freedman,N.J. and
            Liddle,R.A.
  TITLE     Immunoglobulin-like domain containing receptor 1 mediates
            fat-stimulated cholecystokinin secretion
  JOURNAL   J Clin Invest 123 (8), 3343-3352 (2013)
   PUBMED   23863714
REFERENCE   3  (bases 1 to 2476)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   4  (bases 1 to 2476)
  AUTHORS   Hauge,H., Patzke,S., Delabie,J. and Aasheim,H.C.
  TITLE     Characterization of a novel immunoglobulin-like domain containing
            receptor
  JOURNAL   Biochem Biophys Res Commun 323 (3), 970-978 (2004)
   PUBMED   15381095
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Jul 7, 2012 this sequence version replaced NM_001127536.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166709.1, SRR22582416.864612.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               JAXUCZ010000011.1  77623997-77624140   c
            145-315             JAXUCZ010000011.1  77609124-77609294   c
            316-465             JAXUCZ010000011.1  77607920-77608069   c
            466-585             JAXUCZ010000011.1  77602404-77602523   c
            586-732             JAXUCZ010000011.1  77601666-77601812   c
            733-864             JAXUCZ010000011.1  77596914-77597045   c
            865-1664            JAXUCZ010000011.1  77595901-77596700   c
            1665-2476           JAXUCZ010000011.1  77591152-77591963   c
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..2476
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /note="immunoglobulin-like domain containing receptor 1"
                     /db_xref="GeneID:303914"
                     /db_xref="RGD:1307792"
     exon            1..144
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1706
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /codon_start=1
                     /product="immunoglobulin-like domain-containing receptor 1
                     precursor"
                     /protein_id="NP_001121008.2"
                     /db_xref="GeneID:303914"
                     /db_xref="RGD:1307792"
                     /translation="MGASMGCGLLVAGLLLFTWLPAGCLSLLVTVQHTERYVTLFASV
                     TLKCDYTTSAQLQDVVVTWRFKSFCKDPIFDYFSASYQAALSLGQDPSNDCSDNQREV
                     RIVAQRRGQSEPVLGVDYRQRKITIQNRADLVINEVMWWDHGVYYCTIEAPGDTSGDP
                     DKEVKLIVLHWLTVIFIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPTHCCCPEE
                     ALARHRYMKQVQALGPQMMEKPLYWGADRSSQVSSYAMNPLLQRDLSLRSSLPQMPMT
                     QMAAHPPVANGVLEYLEKELRNLNPAQPLPPDLRTKSGHPCSMLSSLGSAEVVERRVI
                     HLPPLIRDPLPSRTSNSSHQQRLNPVPSRPRDPSEGRRQRNHSDFLRELQDRGMRPWA
                     PGRGELDPHWSGRHHRSRPSESSMPWSDWDSLSECPSSSEAPWPSRRPEPREGSQRHG
                     RRRHRSYSPPLPSGPSSWSSEEEKESLPRNWGAQRRHHRRSRRRSQSPNWLEEKPPSY
                     RSLDVTPGKNNMKKGNVERRLERESSHSGRSVVI"
     exon            145..315
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     exon            316..465
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     exon            466..585
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     exon            586..732
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     exon            733..864
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     exon            865..1664
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..2476
                     /gene="Ildr1"
                     /gene_synonym="RGD1307792"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggagatgcg tgtccccagc tggcgtcaga tgaggaaata cgcggctccc cggggccctt
       61 gagcctctgt agccagaatg ggggccagca tgggctgcgg gctgctagtt gctggcctgc
      121 tccttttcac ctggctccca gcagggtgtc tgtccttgct ggtcacagtt cagcacaccg
      181 aacgctatgt cactctgttt gcctctgtca ccctcaaatg tgactacacc acctctgctc
      241 agctccagga tgtggttgtg acatggcgct tcaagtcctt ctgcaaggac cccatctttg
      301 actacttctc tgcctcatac caggccgctt tgtccctggg ccaggacccc tccaatgact
      361 gtagtgacaa tcagagggaa gttcgcatcg tggcccagcg gcgcgggcag agtgagccag
      421 tgctgggggt ggattaccgg cagcgcaaga tcaccatcca gaaccgagca gatcttgtga
      481 ttaatgaagt gatgtggtgg gatcatgggg tatactattg caccatcgag gctccaggag
      541 acacatcggg agacccagat aaggaggtga agctcatcgt gctgcattgg ctgacagtga
      601 tcttcatcat ccttggagcc ctccttctcc tgctgctgat tggtgtgtgc tggtgccagt
      661 gttgtccgca gtattgctgc tgctacatcc gctgcccctg ctgtcccacc cactgttgct
      721 gtcccgagga agccctggcc cgccaccgct acatgaagca ggtacaggcc ctaggtcctc
      781 agatgatgga aaaacccctg tactgggggg cggacaggag ctcccaagtt tcatcttatg
      841 caatgaaccc gctgctgcag cgagatctgt ccttacggtc cagccttcca cagatgccaa
      901 tgacccagat ggccgctcac cctcccgtgg ccaatggcgt cttggaatat ttggagaaag
      961 aattgcggaa cctcaaccca gcccagcctc tgcctccgga tctcagaacc aaatctggtc
     1021 acccttgcag catgctctct tccctgggct ccgccgaggt tgtggaacgc agagtcatcc
     1081 acctgccccc actgatcaga gacccactgc cctccaggac cagcaactcc tcacaccagc
     1141 agcggctcaa tcctgttcct tccagacccc gggatccgag tgagggccgg aggcagcgca
     1201 atcactcgga tttcctccga gaactccagg accgggggat gagaccctgg gcccccggga
     1261 gaggggagct ggacccccat tggagtggga gacaccaccg ctctaggcct agcgagtcct
     1321 ccatgccctg gtcagactgg gacagcctga gcgaatgtcc ctcgtccagt gaggctcctt
     1381 ggccctccag acgaccagag ccccgggaag gatcccagag acatgggaga cgcaggcatc
     1441 gcagctactc acctccccta ccctcgggcc ccagttcttg gagctctgaa gaggagaaag
     1501 agtcgctgcc taggaactgg ggtgcccagc gacgtcacca tcgccgcagc cgccgccgct
     1561 cacagtctcc aaactggctg gaggagaaac cacccagcta ccgctcactg gatgtgactc
     1621 caggcaagaa caacatgaaa aaggggaatg tggagaggcg cttggagagg gagagctccc
     1681 atagcggacg gagcgtggtc atttagtctc caggcctcat actgcttctt ggatcgcacg
     1741 tgtcagcatc accaacattt ctggctgcct cgggagggac accatacatc tgtgtctcac
     1801 agtttgggtg tagattctaa gaatcagata gaagagtttt caaaacaggt gtttgtggga
     1861 ttaataccaa gctttattta tcccttttca caccctctgt ctattacatg gtctccgact
     1921 tgtaagggat cctagctagg ataggatccc tcagaaacac agcaacccag agtgttccag
     1981 taggtcaagg tgctccggac caaggcattc tcataactac aactcaggaa tctttaagag
     2041 gaaatcaaac gtgttccagg aacaggaaac ctatggaata ttatgagcaa gtgcccgtgg
     2101 gaactccctg ccctctctgg aacttcttga gggattttcc acaataagca tccccacctg
     2161 tggtcctgag cattcctgag ttcccaaccc aagcaagaga gcaagtgtga aacttctata
     2221 tctctgtgcc tttcacagac tgtttaatgc aactctggga aaccacaggg aaccaattgt
     2281 tcaccaaccg agcgtgttct catttctttt tttctttctt cttgttcctt tcccctatat
     2341 ttaattggtt ttcttccata tgatactata ataatgctaa aatcacctta agtactttca
     2401 agcaccatac agtataaaca agaaaattaa tgtaacgggc tgaagattcc atttcaaata
     2461 aatatctgct tttcta
//
