LOCUS       XM_039097931            2044 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin 34 (Il34), transcript
            variant X2, mRNA.
ACCESSION   XM_039097931
VERSION     XM_039097931.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097931.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2044
                     /gene="Il34"
                     /note="interleukin 34; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 13 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:498951"
                     /db_xref="RGD:1586038"
     CDS             896..1603
                     /gene="Il34"
                     /codon_start=1
                     /product="interleukin-34 isoform X1"
                     /protein_id="XP_038953859.1"
                     /db_xref="GeneID:498951"
                     /db_xref="RGD:1586038"
                     /translation="MPWGLAWLYCLGILLDVALGNENLEIWTLAQDKECDLTGYLRGK
                     LQYKNRLQYMKHYFPINYRIAVPYEGVLRVANITRLQKAHVSERELRYLWVLVSLNAT
                     ESVLDVLLEGHPSWKYLQEVQTLLENVQRSLMDVEIGPHVEAVLSLLSTPGLSLKLVR
                     PKALLDNCFRVMELLYCSCCKQSPILKWQDCELPRLHPHSPESLMQCAATNVYPLPRQ
                     PPTSLPRSPSSNHGPLP"
ORIGIN      
        1 gagaacagca gtgtactcac atacatttaa ttaattaaaa aaaagagtcc atgatggtgg
       61 agtgtaggga gacaggcttc tagtgacatg ctccctccag caaagccaca cataagcctc
      121 cccaaacact gccaactggg acctggtatc ctaatatctg agcctagggg gggatatttc
      181 attcaaacca ccacagccag gagcccgatt tcttcagagc ctttactcca gatcaaagct
      241 cgtcatcaga tacggtgcct ttctcttggc agctgccttg gggtccttct tgcttcccca
      301 tttcaatgag actcagagag aggccacagt gtggcatgtg gttggtacat gcgcagcatg
      361 aggttggctg tgcctctttc ccccacttga cttctccacc ggaaacaggc agaccaggat
      421 gcatggtgag gttcaatgct agagtccctt ctgaacgaag aagctgcaac aggactgggg
      481 gcatggctca gcagagctag acttcacact gagcagctgc agtcgggaga aaccagagaa
      541 agcgccaccc agccccagat tccaagaggc ctgctgggga ctcccttctc ttcctcctcc
      601 ttctcctctc cctcttcctc ctcctcctga gaccccaaag ccactgtctc acaccacttc
      661 ctgagccgca atggagctcc cagccaccgc cccctggctg tcctctaccc tgacaagcag
      721 atagggcggc cggtagctac cccaggagta cctgccccct ctcagcctgg ggcagccctt
      781 cctggacttg gtggccacct ttgctgacct gaggccatgt aggccctggc tcaggcttcc
      841 ggatacactg ctggggacag tgcctctgct ctcagggggc acccagtgca ccatcatgcc
      901 ctggggactc gcctggttat actgtcttgg gatcctactt gacgtggctt tgggaaacga
      961 gaatttggag atatggactc tggcccaaga taaagaatgt gatcttacag gctaccttcg
     1021 gggcaagctg cagtacaaga accggcttca gtacatgaaa cattacttcc ccatcaacta
     1081 caggattgct gtgccttatg agggggtact cagagtggcc aacatcacga ggctgcagaa
     1141 ggcccatgtg agtgagcgag agctgcggta cctgtgggtc ttggtgagcc tcaacgccac
     1201 tgagtctgtg ctggatgtgc tgctggaggg acacccatcc tggaagtatc tacaggaggt
     1261 tcagacattg ctggagaatg ttcagcggag cctcatggat gtggagattg gccctcacgt
     1321 ggaagctgtg ttatctcttc tgagtacccc tggcctaagc ctgaagctgg tgcggcccaa
     1381 agccttgttg gataactgct tccgggtcat ggagctgctg tactgctctt gctgcaaaca
     1441 aagtcccatc ttaaaatggc aggactgtga gctgcccagg ctccatcccc acagtccaga
     1501 gtccttgatg caatgtgcag ctaccaacgt gtaccctttg cctcggcagc cccccacctc
     1561 cctgcccagg tccccaagtt caaaccatgg cccgttgccc tgagcaatct gtgtgttgac
     1621 cctgtgtcgg gccactggat gtgtttcaga aaccagcctg ggtctgagac tttcctggat
     1681 attgggtagg tagcccttta ggaaaggcct cctgccttct cttccacacc caggcttcct
     1741 gccttctgta cctgtgatat cacctggagc ctcggggagg gttgtggagg ggatggctgg
     1801 ttgttatccc ctacagccac ctctacctgt agccggttct aaaatctgcg aacactgttg
     1861 ccccacaggt gggtggccaa taactactgg gtgccacata ggattccggg acttcctggg
     1921 gcttttcagt tgtgttgatt gtggggtgct ggaccaagga cggaccaatt gccatatctt
     1981 gccacgacaa tgttcttctg gctccttttt ctattaaatg gccatttgtt tggtttggct
     2041 tgca
//
