LOCUS       NM_001166342            3327 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus interleukin 1 receptor accessory protein-like 2
            (Il1rapl2), mRNA.
ACCESSION   NM_001166342 XM_001054740 XM_236512
VERSION     NM_001166342.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3327)
  AUTHORS   Valnegri P, Montrasio C, Brambilla D, Ko J, Passafaro M and Sala C.
  TITLE     The X-linked intellectual disability protein IL1RAPL1 regulates
            excitatory synapse formation by binding PTPdelta and RhoGAP2
  JOURNAL   Hum Mol Genet 20 (24), 4797-4809 (2011)
   PUBMED   21926414
REFERENCE   2  (bases 1 to 3327)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JACYVU010000447.1.
            
            [WARNING] On Mar 30, 2024 this sequence was replaced by
            NM_001166342.3.
            
            On Feb 10, 2021 this sequence version replaced NM_001166342.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760396,
                              SAMN12840110 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-905               JACYVU010000447.1  1094784-1095688
            906-1006            JACYVU010000447.1  1181933-1182033
            1007-1280           JACYVU010000447.1  1715484-1715757
            1281-1467           JACYVU010000447.1  1747294-1747480
            1468-1621           JACYVU010000447.1  1780578-1780731
            1622-1696           JACYVU010000447.1  2049955-2050029
            1697-1826           JACYVU010000447.1  2333564-2333693
            1827-1972           JACYVU010000447.1  2375880-2376025
            1973-2116           JACYVU010000447.1  2386205-2386348
            2117-2287           JACYVU010000447.1  2392489-2392659
            2288-3327           JACYVU010000447.1  2403989-2405028
FEATURES             Location/Qualifiers
     source          1..3327
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..3327
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /note="interleukin 1 receptor accessory protein-like 2"
                     /db_xref="GeneID:300913"
                     /db_xref="RGD:1561761"
     exon            1..905
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1006
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     CDS             925..2985
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /EC_number="3.2.2.6"
                     /note="X-linked interleukin-1 receptor accessory
                     protein-like 2"
                     /codon_start=1
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 precursor"
                     /protein_id="NP_001159814.1"
                     /db_xref="GeneID:300913"
                     /db_xref="RGD:1561761"
                     /translation="MKLPLLLALVVCSAVSTNLKMVSKRNSVDGCIDWSVDLKTYMAL
                     AGEPVRVKCALFYSYIRTNYSMAQSTGLRLMWYRNKGDLEEPIIFSEVRMSKEEDAIW
                     FHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRIRYLEKSEVTKRKEI
                     SCPDMDDFKKSDQEPDVVWYKECKPKMWRSIIIQKGNALLIQEVQEEDGGNYTCELKY
                     EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLNIPCKAFFGFSGESG
                     PMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELTLIFDSVVEADLANYTCHVE
                     NRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLILLLVVYKCYNIELMLFYRQRFGG
                     DETTDDNKEYDAYLSYTKVDQDTLDCDNTEEEQFALEILPDVLEKHYGYKLFIPERDL
                     IPSGTYIEDLTRCVEQSRRLIIVLTPDYILRRGWSIFELESRLHNMLVSGEIKVILIE
                     CTELKGKVNCPEVESLKHNIKLLSLIKWKGPKSSKLNSKFWKHLVYEMPIKKKEMLSH
                     CHVLDSAEQGLFGELQPIPSIAMTSTSATMVPSQADLPEFHHSDSMQMRHCCRGYKHE
                     MPANTLSVPSLGNHHTYCNLPLTLLNGQLPLNNSLKETEELSRNNPLLPLSSKELSFT
                     SDIW"
     exon            1007..1280
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            1281..1467
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1621
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1696
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1826
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            1827..1972
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            1973..2116
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            2117..2287
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
     exon            2288..3327
                     /gene="Il1rapl2"
                     /gene_synonym="RGD1561761"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttctaattc gcacctcgcg gttgcagtca gtcagccagg aggcaccaaa ctgttagcaa
       61 cgaagcccag gctctgggtg acttccacta ccctcccact tccctactcc aggcatattt
      121 cggaggcgct ccagcgacag tggcaggatg tgagaggagc gcagcgctta ctcctcgcat
      181 tcctctcttt gagggctggg gggccagtgg cttctgctca ccggctgggg gggggggggc
      241 tctgggaagc gcaggagacg cgcaggacgg aggcgggcga gccaggttca tgccaggctg
      301 cctgcaccgc agcccgtctg agcctgaggc tccgctgttt tctcgtgtcc cgtgagcgga
      361 ggtagcaccg ccgactaggg tgccccgcgt cccgcgtccc agctcccagc ctggtgcgca
      421 ccgttcggct tgaaccaggt gcggctggaa ggaggcagca ccaaagctaa ctcgctccta
      481 agactcttgg aggcgggcac cttcaagaat ccaagtcact gactgagctg agaggtggta
      541 cctgcggctc taactaaagg gtctaatgat ttagaaacct tccaataacc tgtcccctct
      601 ccggttcatc ccgaagtcca cggaagcgtc acagaactcc aagaatttcc tgaacttccc
      661 aggtatcctc cctggctaag gactggaagt ggagtgaacc tggtgggaga ctttgcgtcc
      721 gggggcttgg gagacacctt ccaaacgcct cctcctcgag catcccattc atctctgggc
      781 agctttactg gccgccccaa aagccaaagc ctgcgctctt ctgaactctg ctctcatctc
      841 tccgtggaca tggaactaca cgcctgaaac ctgctggacc ttactggttg ttttgcaaga
      901 ctcagctgcc agagaacgtg aacaatgaag ctgccacttc ttctggccct ggtggtctgt
      961 tctgcagtca gtacaaattt gaagatggtt tcaaagagaa attctgtgga tggctgcatc
     1021 gattggtcgg tggatctcaa gacctacatg gctttggcag gtgaacctgt ccgagtgaaa
     1081 tgtgcgcttt tctacagtta tatccgcacc aactatagca tggcccagag taccgggctc
     1141 cggctcatgt ggtacagaaa caaaggggac ttggaagagc ccatcatctt ttcagaggtc
     1201 aggatgagca aagaggaaga tgccatatgg tttcactcag ctgaggcaca agacagtgga
     1261 ttctacactt gtgttctaag aaactccaca tactgcatga aggtgtcaat gtccttgact
     1321 gttgcagaga atgaatctgg cctgtgctac aatagcagga tccgctactt agagaaatct
     1381 gaagttacta aacgaaagga gatctcctgc ccagacatgg atgactttaa gaagtctgat
     1441 caggaacctg atgttgtatg gtacaaggaa tgcaagccaa aaatgtggag aagcataata
     1501 atacagaagg gaaatgctct tctcatccaa gaagttcaag aagaagatgg aggaaactat
     1561 acatgtgaac ttaagtatga agggaaactt gtaaggcgaa caacagaatt aaaagttaca
     1621 gctttactca cagacaagcc tcccaagcca ttgttcccca tggaaaatca gccaagtgtt
     1681 atagatgtcc agctgggtaa acctctgaac atcccttgca aagctttctt tggattcagt
     1741 ggggagtctg gaccaatgat ctactggatg aaaggcgaga aatttattga agaattggca
     1801 ggtcacatta gagaaggtga aataaggctc ctcaaagaac atcttggaga aaaagaagtt
     1861 gaattgaccc ttatctttga ctcagtggta gaagctgact tggctaatta cacttgccat
     1921 gtggaaaaca gaaacggacg gaaacatgcc agtgttttac ttcggaaaaa ggatttaatc
     1981 tacaaaattg agcttgcagg gggcctggga gcaatctttc tgctgcttat actgctgctg
     2041 gtggtctaca agtgctacaa catagaactg atgcttttct accgacagcg ttttggaggt
     2101 gatgaaacta ctgatgacaa caaggaatat gatgcatatc tctcttacac aaaagtggat
     2161 caagatactt tggactgtga caatactgag gaagagcagt ttgctcttga aatactgcca
     2221 gatgtgctag aaaaacacta tggatataaa ctcttcatcc cagaaaggga tctgattcca
     2281 agtggaacat atattgaaga tctcacaaga tgtgttgagc aaagcagaag acttattatc
     2341 gtgctaactc cggactatat tctcagacgg ggatggagta ttttcgaact ggaaagcaga
     2401 ctccataaca tgctagtcag tggagaaatc aaagtgattt tgattgagtg tacagaatta
     2461 aaagggaagg tgaattgccc ggaagtggaa tcactaaagc acaacatcaa acttctgtca
     2521 ctgatcaagt ggaagggacc caaaagcagc aagttaaatt ctaagttttg gaagcactta
     2581 gtgtatgaaa tgcccatcaa gaaaaaagaa atgctatccc actgccatgt tctagactct
     2641 gcagaacagg ggctttttgg agagcttcag cctatacctt ccattgccat gacaagtacc
     2701 tcagccacaa tggtgccatc gcaagctgat ctccctgagt tccaccattc ggattcaatg
     2761 caaatgaggc actgttgcag aggatacaaa catgagatgc cagccaacac cctgtcagta
     2821 ccctccttag gcaaccacca cacttactgt aacttgccac taacactact caatggacag
     2881 ctacccctta ataattcctt aaaagagact gaggaacttt caaggaacaa tcccttacta
     2941 ccattatcat ccaaagagct tagcttcaca agtgatattt ggtagcagaa aaaaaaaaaa
     3001 aaaaccctca attcctcaga acaactaaat gagaatatga aatctctgct acactgagaa
     3061 taaattactc ctaaaaacat taaggtgctg aaactgtgaa gaaaaaggca caacaaccat
     3121 gtttgtactt aaatatttta tttaccttta tagaatagta agggaataaa aggtcttgtt
     3181 tttgtagtgt ggcaccttgt cacaatgtac agatttgatt tttcctggaa aaaaaattga
     3241 attgtgtctt ttccaagcag gttctatggc accatatgat ctgcccatat ttaggagttt
     3301 ggaatttaaa caatattttt cataaaa
//
