LOCUS       XM_039083091            5246 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin 1 receptor type 1 (Il1r1),
            transcript variant X5, mRNA.
ACCESSION   XM_039083091
VERSION     XM_039083091.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5246
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5246
                     /gene="Il1r1"
                     /gene_synonym="IL-1R-1; IL-1R-alpha; IL-1RT-1; IL-1RT1"
                     /note="interleukin 1 receptor type 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 21 ESTs, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     13 samples with support for all annotated introns"
                     /db_xref="GeneID:25663"
                     /db_xref="RGD:2892"
     CDS             661..2382
                     /gene="Il1r1"
                     /gene_synonym="IL-1R-1; IL-1R-alpha; IL-1RT-1; IL-1RT1"
                     /codon_start=1
                     /product="interleukin-1 receptor type 1 isoform X3"
                     /protein_id="XP_038939019.1"
                     /db_xref="GeneID:25663"
                     /db_xref="RGD:2892"
                     /translation="MKVLLGFICLIVPLLSLETDKCTEYPNEVISFSSVNEIDIRSCP
                     LTPNEMHGGTIIWYKNDSKTPISADKDSRIHQQNEHLWFVPAKMEDSGYYYCIMRNST
                     YCLKTKITMSVLENDPGLCYNTQASFIQRLHVAGDGSLVCPYLDFFKDENNELPKVQW
                     YKNCKPLPLDDGNFFGFKNKLMVMNVAEEHRGNYTCRTSYTYQGKQYPVTRVITFITI
                     DDSKRDRPVIMSPRNETMEADPGSTIQLICNVTGQFTDLVYWKWNGSEIEWDDPILAE
                     DYQFLEHPSAKRKYTLITTLNVSEVKSQFYRYPFICFVKNTHILETAHVRLVYPVPDF
                     KNYLIGGFAIFTATAVFCACIYKVFKVDIVLWYRDSCSDFLPPKASDGKTYDAYVLYP
                     KTYGEGSFAYLDTFVFKLLPEVLEGQFGYKLFICGRDDYVGEDTIEVTNENVKRSRRL
                     IIILVRDMGSFSCLGQSSEEQIAIYDALIREGIKIILLELEKIQDYEKMPESIQFIKQ
                     KHGAICWSGDFKERPQSAKTRFWKNLRYQMPAQRRSPLSKHHLLTLDPVLDTKEKLQA
                     ETHLPLG"
ORIGIN      
        1 atgtgtcact gcaggattaa agcccaagag gctctgacac aggcgtcatg aagagcccac
       61 tttcgctggg tcgactcaca agaagtcagc tttccgtcag tctcgtgcac cccagaccca
      121 gtccagtgct ttttaggaag caaagcaaag agtaagtaat gctgtcctgg cctaactgca
      181 ggaggcattt ttggttttaa cagccagcct cagcttagca gacttcgttc cccgggagaa
      241 aggttgctgg atgtcatccg agttcccagt acacgatcgt gaacaaccca gatgaagcaa
      301 aactccactt aggaaaagca ttcccatctg ttactcaacg gactgaccat ttcgcctcct
      361 ggttcgggcg tttctgagaa gcgactccct gggtgaattc caagtttcaa atgtcattct
      421 gtgctgagca ttgctccaga ccctacaggg atgaggacga gggttatttc tgagaaatga
      481 ctccatatgt gaattccaaa tatatgacgc gcacagagct gcctcaaggc agactcagca
      541 ggggctgcgc cgtatcagcg aaagcatgaa gttaaaaggc tcgccaagcg aagtcgcctc
      601 tggttgtctg gatgggactg gcttctgagc ctttagttgg catcatgcaa aacggagaat
      661 atgaaagtgc tacttgggtt catttgtctc attgtgcctc tgctgtcgct ggagaccgac
      721 aaatgcacgg agtatccaaa tgaggtcatt tcattttcat ccgtaaatga aattgacatt
      781 cgcagctgtc ctcttactcc aaacgaaatg catggcggca ccataatctg gtataaaaat
      841 gacagcaaga cccccatatc agcggacaag gactccagga ttcatcagca gaatgaacat
      901 ctttggtttg ttcccgccaa gatggaggat tcaggctatt actattgtat aatgagaaac
      961 tcaacatact gcctcaaaac taaaataacc atgagtgtct tagagaatga ccctggcttg
     1021 tgctataaca cacaagccag cttcatacag cggctccatg ttgcagggga tggaagtctt
     1081 gtgtgccctt atctggattt tttcaaagat gaaaataacg agttacccaa agttcagtgg
     1141 tataagaact gtaaacctct gcctcttgac gatggaaact tctttggatt caagaataaa
     1201 ctgatggtga tgaatgtggc tgaagagcac agagggaact atacttgccg cacgtcctac
     1261 acataccagg ggaagcaata tcccgtcaca cgagtaataa catttatcac aatagatgac
     1321 agcaagaggg acagacctgt gattatgagc ccacggaatg agacgatgga agctgaccca
     1381 ggatccacga tacaactgat ctgcaacgtc acgggccagt tcaccgacct tgtctactgg
     1441 aagtggaatg ggtcggaaat tgaatgggac gatccaatcc tagccgaaga ctatcagttt
     1501 ttggaacacc cttcagccaa aagaaagtac actctcatta caacacttaa cgtttcagag
     1561 gtcaaaagcc agttttatcg ctatccgttc atctgcttcg ttaagaacac tcatattctg
     1621 gagactgcac acgtacggtt agtataccca gttcctgact tcaagaatta cctcatcggg
     1681 ggctttgcca tcttcacagc tacagccgtg ttctgtgctt gcatctacaa agtcttcaag
     1741 gttgatatag tgctttggta cagggactcc tgctctgatt ttcttccccc aaaagcttca
     1801 gatggaaaga cctatgatgc ctatgttctt tatcccaaga cctacggaga gggatccttt
     1861 gcatacttgg atacttttgt gtttaagctg ttgccggagg tcttggaggg acagtttgga
     1921 tacaaactgt tcatttgtgg aagggatgac tatgttgggg aagataccat cgaggttact
     1981 aatgaaaacg taaagagaag cagaaggctg atcatcattt tagtgagaga tatgggaagc
     2041 ttcagctgtc tgggccagtc atctgaagag cagatagcaa tatacgatgc cctcatccgg
     2101 gaaggaatta aaatcatcct gctcgagttg gagaaaatcc aagactatga gaaaatgcca
     2161 gaatctattc aattcattaa gcagaagcat ggggccattt gctggtcagg agactttaaa
     2221 gaaagaccgc agtctgccaa gaccaggttc tggaaaaact taagatacca gatgccagcc
     2281 caacggcgat caccactgtc taaacatcac ttactaaccc tggatcctgt gctggacact
     2341 aaggagaaac tgcaggcgga gacacactta ccacttggct agtgtgggaa aggcgggcgg
     2401 gccaagactg ttggagtgcc tcctgtcgtc agatgctgca gctgggctct gcctcccagt
     2461 aaaacagtca tgaaacaaac cagtgcagtc ccttgtccca ggtcacctgg aattggcttt
     2521 gaagagaaca agacttggtg accaggccat cctgagcaga gagcttggga agccccagag
     2581 taacagttgc tctgggacgt tactcaggat gtttggggaa caatcgaggc agtgaactgg
     2641 gaggaggaag cttcaggaaa tggccacatg tgtgggtggt taaattagat tctgtggagt
     2701 ctcacagagg gattatggtt gtctgaggac actttggggg tcattgtcaa aaaagtgcct
     2761 cccctaagcc tcagtgcagg tgaagtttac tggtacccat cagtggaagg catttcttcc
     2821 ctgaattttc cagacaactc ggctgtcaaa catagttttc aaagactaaa ttctattgtg
     2881 tagagcttga aaaccgcctt tttcagtgag aaggattctc tgggattccc ttccctgcag
     2941 tcagctaagc tttctggatt ttaaatcaac tgtaggagga agccacccac ctccaggttc
     3001 ttctattcaa gtctccaccc ttaaatggct ctcacaccat attccttctg cagggctcat
     3061 tgcttctctg gaaataaatg cggtgcctcc tccctccgtc ctgtcacagg cacagtctga
     3121 agatttacct tcaagagact ctgctcttac cccacccacc actgccaggc tagggctgta
     3181 atacttcttt cgcagaagca gaaatctaag ctcctcccct tcttgtctgg tcccagggct
     3241 ccagtcagcc ccctcttcac cgtcctgctg tgtgattgca gaaggacctc tggatcctct
     3301 ctgtacctgt tctccacaca gtgccgccgc tctgtctttg tccacttcct gtgcccacaa
     3361 ttcgctcttg gcgttttctc cacctgacaa ggagtttgct acagtttaaa gttcatttta
     3421 atgctaaacc ccatccgccc aatctctgct tactctaaga cttttccact caagctgcca
     3481 gcccccttgt ctgtcagtcc atctctgctg cttctctgta aaaggttgtt tctttactcg
     3541 cataaatcag tcctctgagg gagaagtagt gagtgtctct ttgctcattg ctttccgaaa
     3601 tggaaacaga tggtatagat ttcctaaggc ctttattata aagtcatctt ggataatcat
     3661 atttaaattt gaaattgttc taattttata tagaaaggga ctgacccatt taacaaaagg
     3721 acacttttaa ccctactgga ccttgaactt tctggtttct gtccctgtgc tctgactttt
     3781 tttttttttt ttcagtatgc tctgactttt tgatttcagg tctagccctg tgtacttacc
     3841 ttagtattca gtatttactc agtacttact cagtacttac tcagtactta gtactcagta
     3901 tttactcagt actcagtact tactcaatac tcatgggaag agacctgggt gttctttggg
     3961 aagtaattga gtggaggcat gttttgacag gaacccacag tccctttcag tgttgggatt
     4021 ataaacacct accttagata ttttagattt tccaatactt gttccctaaa ggtcaacatt
     4081 tcttctccca actacaagtg aaagaagagg aaaaaaattt tttgtggtac agaagttttt
     4141 tgtttgttta tttttaactt gatgactgtc ttcagagtag tcctcacagt tctggaaggt
     4201 tgaaaaaacc cgagttcaca tgccaagaac aaacccagtt ttaagggttg tatatacggg
     4261 gatatccatc tgtctatcag actttgaacg tctgctgtgg gcggggacaa acgttattta
     4321 aaggcatttc tcacctacat aaaagttgac aaaaacacac aatttgggat tgtgactctt
     4381 gagttttgac ctcatttctc acagacccaa ccttacagca gattgatcaa tggactgctg
     4441 gggtagagaa agaaaggttg ccccacactg cagccagaag tctgatggac cgaggtgata
     4501 tcctgactca tgatgtttta aaggtttaag cttgctgata atgtttttgt ctgtcaccca
     4561 gaaaatgtat tggcgtgcat gtctattatg tgtgaatgag tgttaatgga aacttggcca
     4621 gaaagtataa gggggagagg aagaacagag agccacagat cttgtgacac tgagggggaa
     4681 atagaatctg tcccgagaaa gcccctcaac aagaaagtag ggtcattgct ggttcccagg
     4741 ggccatctaa gaggatgaga catcacgtaa gggcagagga aactttctga gacttctccc
     4801 cgtccacccc agaagtgtct ggtgtcagct gaggatcacg ctttgcccaa tacttagatt
     4861 tcaccgtact ttctggtggt gtttttttta aaaaggccaa gtgttgcaga agtttgcaca
     4921 tgcaaccgtg tattaattgc cagtgtttaa aactggttta gcagaattta tatttttctc
     4981 tctcctgcct tttgaatttt actttatgat agagaaagta ttgagccatt tttagtgact
     5041 ttttaaaaat aatatatatt tatactggtc aataatgaag ggtgtttttt ttattattga
     5101 agaacttgat tttatagttc tgcaacagat gccaaatatt atgtaatcac aaaccacata
     5161 atttatgtac agtgcctatg acggatcaat aaaccgaacc tgttttctaa taaattgtta
     5221 aagcctcctt ggagtatcac tgaaaa
//
