LOCUS       XM_006244747            4982 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin 1 receptor type 1 (Il1r1),
            transcript variant X1, mRNA.
ACCESSION   XM_006244747
VERSION     XM_006244747.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244747.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244747.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4982
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4982
                     /gene="Il1r1"
                     /gene_synonym="IL-1R-1; IL-1R-alpha; IL-1RT-1; IL-1RT1"
                     /note="interleukin 1 receptor type 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 21 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     36 samples with support for all annotated introns"
                     /db_xref="GeneID:25663"
                     /db_xref="RGD:2892"
     CDS             346..2118
                     /gene="Il1r1"
                     /gene_synonym="IL-1R-1; IL-1R-alpha; IL-1RT-1; IL-1RT1"
                     /codon_start=1
                     /product="interleukin-1 receptor type 1 isoform X1"
                     /protein_id="XP_006244809.1"
                     /db_xref="GeneID:25663"
                     /db_xref="RGD:2892"
                     /translation="MLPRLVTSSAKSSILENMKVLLGFICLIVPLLSLETDKCTEYPN
                     EVISFSSVNEIDIRSCPLTPNEMHGGTIIWYKNDSKTPISADKDSRIHQQNEHLWFVP
                     AKMEDSGYYYCIMRNSTYCLKTKITMSVLENDPGLCYNTQASFIQRLHVAGDGSLVCP
                     YLDFFKDENNELPKVQWYKNCKPLPLDDGNFFGFKNKLMVMNVAEEHRGNYTCRTSYT
                     YQGKQYPVTRVITFITIDDSKRDRPVIMSPRNETMEADPGSTIQLICNVTGQFTDLVY
                     WKWNGSEIEWDDPILAEDYQFLEHPSAKRKYTLITTLNVSEVKSQFYRYPFICFVKNT
                     HILETAHVRLVYPVPDFKNYLIGGFAIFTATAVFCACIYKVFKVDIVLWYRDSCSDFL
                     PPKASDGKTYDAYVLYPKTYGEGSFAYLDTFVFKLLPEVLEGQFGYKLFICGRDDYVG
                     EDTIEVTNENVKRSRRLIIILVRDMGSFSCLGQSSEEQIAIYDALIREGIKIILLELE
                     KIQDYEKMPESIQFIKQKHGAICWSGDFKERPQSAKTRFWKNLRYQMPAQRRSPLSKH
                     HLLTLDPVLDTKEKLQAETHLPLG"
ORIGIN      
        1 atgtgtcact gcaggattaa agcccaagag gctctgacac aggcgtcatg aagagcccac
       61 tttcgctggg tcgactcaca agaagtcagc tttccgtcag tctcgtgcac cccagaccca
      121 gtccagtgct ttttaggaag caaagcaaag agtaagtaat gctgtcctgg cctaactgca
      181 ggaggcattt ttggttttaa cagccagcct cagcttagca gacttcgttc cccgggagaa
      241 aggttgctgg atgtcatccg agttcccagt acacgatcgt gaacaaccca gatgccttgg
      301 ctctgccgaa gccctgtgcc gtaatgtggc tggagagtac tcttcatgct gccgaggctt
      361 gtgacatctt cggctaaatc ctccatcctg gagaatatga aagtgctact tgggttcatt
      421 tgtctcattg tgcctctgct gtcgctggag accgacaaat gcacggagta tccaaatgag
      481 gtcatttcat tttcatccgt aaatgaaatt gacattcgca gctgtcctct tactccaaac
      541 gaaatgcatg gcggcaccat aatctggtat aaaaatgaca gcaagacccc catatcagcg
      601 gacaaggact ccaggattca tcagcagaat gaacatcttt ggtttgttcc cgccaagatg
      661 gaggattcag gctattacta ttgtataatg agaaactcaa catactgcct caaaactaaa
      721 ataaccatga gtgtcttaga gaatgaccct ggcttgtgct ataacacaca agccagcttc
      781 atacagcggc tccatgttgc aggggatgga agtcttgtgt gcccttatct ggattttttc
      841 aaagatgaaa ataacgagtt acccaaagtt cagtggtata agaactgtaa acctctgcct
      901 cttgacgatg gaaacttctt tggattcaag aataaactga tggtgatgaa tgtggctgaa
      961 gagcacagag ggaactatac ttgccgcacg tcctacacat accaggggaa gcaatatccc
     1021 gtcacacgag taataacatt tatcacaata gatgacagca agagggacag acctgtgatt
     1081 atgagcccac ggaatgagac gatggaagct gacccaggat ccacgataca actgatctgc
     1141 aacgtcacgg gccagttcac cgaccttgtc tactggaagt ggaatgggtc ggaaattgaa
     1201 tgggacgatc caatcctagc cgaagactat cagtttttgg aacacccttc agccaaaaga
     1261 aagtacactc tcattacaac acttaacgtt tcagaggtca aaagccagtt ttatcgctat
     1321 ccgttcatct gcttcgttaa gaacactcat attctggaga ctgcacacgt acggttagta
     1381 tacccagttc ctgacttcaa gaattacctc atcgggggct ttgccatctt cacagctaca
     1441 gccgtgttct gtgcttgcat ctacaaagtc ttcaaggttg atatagtgct ttggtacagg
     1501 gactcctgct ctgattttct tcccccaaaa gcttcagatg gaaagaccta tgatgcctat
     1561 gttctttatc ccaagaccta cggagaggga tcctttgcat acttggatac ttttgtgttt
     1621 aagctgttgc cggaggtctt ggagggacag tttggataca aactgttcat ttgtggaagg
     1681 gatgactatg ttggggaaga taccatcgag gttactaatg aaaacgtaaa gagaagcaga
     1741 aggctgatca tcattttagt gagagatatg ggaagcttca gctgtctggg ccagtcatct
     1801 gaagagcaga tagcaatata cgatgccctc atccgggaag gaattaaaat catcctgctc
     1861 gagttggaga aaatccaaga ctatgagaaa atgccagaat ctattcaatt cattaagcag
     1921 aagcatgggg ccatttgctg gtcaggagac tttaaagaaa gaccgcagtc tgccaagacc
     1981 aggttctgga aaaacttaag ataccagatg ccagcccaac ggcgatcacc actgtctaaa
     2041 catcacttac taaccctgga tcctgtgctg gacactaagg agaaactgca ggcggagaca
     2101 cacttaccac ttggctagtg tgggaaaggc gggcgggcca agactgttgg agtgcctcct
     2161 gtcgtcagat gctgcagctg ggctctgcct cccagtaaaa cagtcatgaa acaaaccagt
     2221 gcagtccctt gtcccaggtc acctggaatt ggctttgaag agaacaagac ttggtgacca
     2281 ggccatcctg agcagagagc ttgggaagcc ccagagtaac agttgctctg ggacgttact
     2341 caggatgttt ggggaacaat cgaggcagtg aactgggagg aggaagcttc aggaaatggc
     2401 cacatgtgtg ggtggttaaa ttagattctg tggagtctca cagagggatt atggttgtct
     2461 gaggacactt tgggggtcat tgtcaaaaaa gtgcctcccc taagcctcag tgcaggtgaa
     2521 gtttactggt acccatcagt ggaaggcatt tcttccctga attttccaga caactcggct
     2581 gtcaaacata gttttcaaag actaaattct attgtgtaga gcttgaaaac cgcctttttc
     2641 agtgagaagg attctctggg attcccttcc ctgcagtcag ctaagctttc tggattttaa
     2701 atcaactgta ggaggaagcc acccacctcc aggttcttct attcaagtct ccacccttaa
     2761 atggctctca caccatattc cttctgcagg gctcattgct tctctggaaa taaatgcggt
     2821 gcctcctccc tccgtcctgt cacaggcaca gtctgaagat ttaccttcaa gagactctgc
     2881 tcttacccca cccaccactg ccaggctagg gctgtaatac ttctttcgca gaagcagaaa
     2941 tctaagctcc tccccttctt gtctggtccc agggctccag tcagccccct cttcaccgtc
     3001 ctgctgtgtg attgcagaag gacctctgga tcctctctgt acctgttctc cacacagtgc
     3061 cgccgctctg tctttgtcca cttcctgtgc ccacaattcg ctcttggcgt tttctccacc
     3121 tgacaaggag tttgctacag tttaaagttc attttaatgc taaaccccat ccgcccaatc
     3181 tctgcttact ctaagacttt tccactcaag ctgccagccc ccttgtctgt cagtccatct
     3241 ctgctgcttc tctgtaaaag gttgtttctt tactcgcata aatcagtcct ctgagggaga
     3301 agtagtgagt gtctctttgc tcattgcttt ccgaaatgga aacagatggt atagatttcc
     3361 taaggccttt attataaagt catcttggat aatcatattt aaatttgaaa ttgttctaat
     3421 tttatataga aagggactga cccatttaac aaaaggacac ttttaaccct actggacctt
     3481 gaactttctg gtttctgtcc ctgtgctctg actttttttt ttttttttca gtatgctctg
     3541 actttttgat ttcaggtcta gccctgtgta cttaccttag tattcagtat ttactcagta
     3601 cttactcagt acttactcag tacttagtac tcagtattta ctcagtactc agtacttact
     3661 caatactcat gggaagagac ctgggtgttc tttgggaagt aattgagtgg aggcatgttt
     3721 tgacaggaac ccacagtccc tttcagtgtt gggattataa acacctacct tagatatttt
     3781 agattttcca atacttgttc cctaaaggtc aacatttctt ctcccaacta caagtgaaag
     3841 aagaggaaaa aaattttttg tggtacagaa gttttttgtt tgtttatttt taacttgatg
     3901 actgtcttca gagtagtcct cacagttctg gaaggttgaa aaaacccgag ttcacatgcc
     3961 aagaacaaac ccagttttaa gggttgtata tacggggata tccatctgtc tatcagactt
     4021 tgaacgtctg ctgtgggcgg ggacaaacgt tatttaaagg catttctcac ctacataaaa
     4081 gttgacaaaa acacacaatt tgggattgtg actcttgagt tttgacctca tttctcacag
     4141 acccaacctt acagcagatt gatcaatgga ctgctggggt agagaaagaa aggttgcccc
     4201 acactgcagc cagaagtctg atggaccgag gtgatatcct gactcatgat gttttaaagg
     4261 tttaagcttg ctgataatgt ttttgtctgt cacccagaaa atgtattggc gtgcatgtct
     4321 attatgtgtg aatgagtgtt aatggaaact tggccagaaa gtataagggg gagaggaaga
     4381 acagagagcc acagatcttg tgacactgag ggggaaatag aatctgtccc gagaaagccc
     4441 ctcaacaaga aagtagggtc attgctggtt cccaggggcc atctaagagg atgagacatc
     4501 acgtaagggc agaggaaact ttctgagact tctccccgtc caccccagaa gtgtctggtg
     4561 tcagctgagg atcacgcttt gcccaatact tagatttcac cgtactttct ggtggtgttt
     4621 tttttaaaaa ggccaagtgt tgcagaagtt tgcacatgca accgtgtatt aattgccagt
     4681 gtttaaaact ggtttagcag aatttatatt tttctctctc ctgccttttg aattttactt
     4741 tatgatagag aaagtattga gccattttta gtgacttttt aaaaataata tatatttata
     4801 ctggtcaata atgaagggtg ttttttttat tattgaagaa cttgatttta tagttctgca
     4861 acagatgcca aatattatgt aatcacaaac cacataattt atgtacagtg cctatgacgg
     4921 atcaataaac cgaacctgtt ttctaataaa ttgttaaagc ctccttggag tatcactgaa
     4981 aa
//
