LOCUS       XM_039080940            1693 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin 18 (Il18), transcript
            variant X2, mRNA.
ACCESSION   XM_039080940
VERSION     XM_039080940.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080940.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1693
                     /gene="Il18"
                     /gene_synonym="IL-1 gamma; IL-18"
                     /note="interleukin 18; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 mRNAs, 6 ESTs, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 223 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:29197"
                     /db_xref="RGD:2889"
     CDS             984..1568
                     /gene="Il18"
                     /gene_synonym="IL-1 gamma; IL-18"
                     /codon_start=1
                     /product="interleukin-18 isoform X1"
                     /protein_id="XP_038936868.1"
                     /db_xref="GeneID:29197"
                     /db_xref="RGD:2889"
                     /translation="MAAIPEEGSCVNFKEMMFIDNTLYLIPEDNGDLESDHFGRLHCT
                     TAVMRSINDQVLFVDKRNPPVFEDMPDIDRTANESQTRLIIYMYKDSEVRGLAVTLSV
                     KDGRMSTLSCKNKIISFEEMNPPENIDDIKSDLIFFQKRVPGHNKMEFESSLYEGHFL
                     ACQKEDDAFKLVLKRKDENGDKSVMFTLTNLHQS"
ORIGIN      
        1 ctggaggtca tcagttccct gggtctcact agcccaccag cttagctagc caaatcatgt
       61 gtaccgcatg tcctagggaa agactctgtc tcaaaaacca ttatggatag ttctgagaac
      121 aacacttgaa gttggcctct gcctctacat gaatgtacaa ttcccctaca ccccacacat
      181 atacacacac atgcacacac acatgcacat acaggaaaaa gtataatgct tcagattata
      241 atgctatagg catctcatat ggtaatggaa aagctttaca aaagtagtca ctgagaagta
      301 aatctgaagg gcttctatca agggtcatgt gacaccatgt tggcctggga aagtaaaatc
      361 ctgaataagg tcttaaagag gaagaaagaa aatactaaac aaaaaatatt ttatcccccc
      421 caaatatatt ttaggtataa tggctatagt ataaaaaatt actgcagtat gactattatt
      481 cagtggtatt agataaagaa aattcatgtt gaaatgtgca agagcctcca aatctatagg
      541 ctaatagaga aaggatgctc taactaacca accggattca ttttcttaca ttgtatgtac
      601 ctggctttct gaaagaggca tgggtccatt ccttgcagaa gagatggttc attgaatagt
      661 ggcatttaca gtaaaggaaa tgcctttgtt ttctaacagt ttgcatcaaa tctctcatgc
      721 caggggaaaa gaggcaccat gtgaaggcgg gcctgaggcg tgccaagggc agtctcctcc
      781 ctttgcctgc cctcttcctc ctctgtgttt ctcacaggcg cagctgtacc ccagggtgca
      841 gtttctctgt agctccatgc tttccgtaat cctagctgcc tgctccagct gctgacagga
      901 ctgccatctt ctgcaacctc caggatcagg aaaaagaaag aggcctcgaa gcttccaaat
      961 cacttcctct tggcccagga acaatggctg ccataccaga agaaggctct tgtgtcaact
     1021 tcaaagaaat gatgtttatt gacaacacac tttaccttat acctgaagat aatggagact
     1081 tggaatcaga ccactttggc agacttcact gtacaaccgc agtaatgcgg agcataaatg
     1141 accaagttct cttcgttgac aaaagaaacc cgcctgtgtt cgaggacatg cctgatatcg
     1201 accgaacagc caacgaatcc cagaccagac tgataatata tatgtacaaa gatagtgaag
     1261 taagaggact ggctgtgacc ctatctgtga aggatggaag gatgtctacc ctctcctgta
     1321 aaaacaaaat catttccttt gaggaaatga atccacctga aaatattgat gatataaaaa
     1381 gtgatctcat attctttcag aaacgtgtgc caggacacaa caaaatggaa tttgaatctt
     1441 ccctgtatga aggacacttt ctagcttgcc aaaaggaaga tgatgctttc aaactcgttt
     1501 tgaaaaggaa ggatgaaaat ggggataaat ctgtaatgtt cactcttact aacttacatc
     1561 aaagttaggt attaaggttt ctgtattcca gaaagacgat tagtatacac gagccttatg
     1621 ataacctact ctgtatttct atgacaaaat acctgaggcc gcatgattta tagagtaaac
     1681 aagtttaatt gtc
//
