LOCUS       XM_039080939            3180 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin 18 (Il18), transcript
            variant X1, mRNA.
ACCESSION   XM_039080939
VERSION     XM_039080939.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3180
                     /gene="Il18"
                     /gene_synonym="IL-1 gamma; IL-18"
                     /note="interleukin 18; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 mRNAs, 6 ESTs, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 158 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:29197"
                     /db_xref="RGD:2889"
     CDS             2471..3055
                     /gene="Il18"
                     /gene_synonym="IL-1 gamma; IL-18"
                     /codon_start=1
                     /product="interleukin-18 isoform X1"
                     /protein_id="XP_038936867.1"
                     /db_xref="GeneID:29197"
                     /db_xref="RGD:2889"
                     /translation="MAAIPEEGSCVNFKEMMFIDNTLYLIPEDNGDLESDHFGRLHCT
                     TAVMRSINDQVLFVDKRNPPVFEDMPDIDRTANESQTRLIIYMYKDSEVRGLAVTLSV
                     KDGRMSTLSCKNKIISFEEMNPPENIDDIKSDLIFFQKRVPGHNKMEFESSLYEGHFL
                     ACQKEDDAFKLVLKRKDENGDKSVMFTLTNLHQS"
ORIGIN      
        1 aaatgctttg gaaaaaaaaa agcaaagaga aatctagact ttcctcactc ttcttttgta
       61 aacagtggtg aatttatctt ctccttttcg attgaaactc tgtgattaaa aagtagatta
      121 gctattttac gcggagtgaa cttgaacagc ctgactagat acacatgaat tataaatact
      181 ttgtgtttta tgtctttgca ccatgtgtat gcctggtgcc ctcggaggtc agaagtgggt
      241 gttggattcc caggggctgc cattaagaat ggttgtaagc caccatgtgc atgcgggcaa
      301 tcacatcacc tgaatcattt agaacagcag ccaatgttct taaccactga gccatctctc
      361 tggcatcttc atgttagact ccatttacat atctgtttgc tctatgctcc acgttactgg
      421 caccgtaata ctattcgaac tttttgtagt acttgatatg gctgccacca tccctttagg
      481 cctgtttcca ttcttggctt gggagacaag ctatgctaac atttaattgc tgttttaact
      541 ttgctgccct ctaactatgc ggcttcccat cagcttcctt attcattagc tggtaacttt
      601 aggcaaacat cttaaccctg tcaaacctca agttttttcg aagataaaat aagggttaag
      661 agaggttaat gactcctgct cagatctctc atcaaaatga aacgcaatga tacttagtaa
      721 atgttaatct cctctactga tccttcccca cttatcacca cgcaaatgtc aaggtataac
      781 cttagacctt taccctttaa tttcaacatt ctcccttagt aaccttgtct cgactcttaa
      841 atcctctggt tatgggttag acctgactct caactcttct cttctcttct gaatcagctc
      901 ttctaccagc aaacatctca cttcagtgtc tctgtgagca ctgaattcat cttgtgcact
      961 ctccttacaa cacagctctt ctgaccacca gggcacaggt cagtagggga aatttgaaaa
     1021 aagatgactt ccatggctta tgtataaatt gctcaggctt gaaattctgc ctgggtgact
     1081 ttattttcat cagtctctcc cctgggacta cacatttttt tcctatccta aacccatctt
     1141 cctcagcact ggtgcctcaa cttcttccta tgtgtcactt ccgactgcct aactcaggcc
     1201 cttgactctt gacagcctct cagttggaag tgaaattgga aagagaaact cagtgaggta
     1261 agttcctgga gccactggac catcttaagg gttggagact tcagacaatt gcttccagct
     1321 ctagatacct catcaggact agagattcta atttatctgg atgagcaggg aagatgccct
     1381 cccaccagtg cgataatatg aaaattaaat ttcctacata taaatcagac tgcatcattc
     1441 attcctccat aactcacaaa tcacttgtaa ttgttgaaac tacctgacca ggagcttgaa
     1501 gaccccactc tagctgttca ctccagcctg gctggattgc tccctagtct cgtgaccatt
     1561 ctattctctt cacctaggat atttctcatc tccttcagat gaaattcaca tatgcaattt
     1621 aaccttcgag ttgcaatttc tgggttgcct gcttcttaag caacacattc ctatttcctc
     1681 ctgcagcttt ggacagcttt ctggtggccc ttatcttgct gtcctgtgtg ataaaggcca
     1741 gtgcacttta caacctctcc tagcagtact ctctgaatac aaagtctagc tatacctccc
     1801 cgctcctagc acctaacatg ctgtcttaca tactacaaca ctaagtgggt agataacttt
     1861 ataattgact gtgcatattg gtgccttttc tggcagttcg atattaacca attactgcaa
     1921 acaaattctt gacgtagtaa ctatgataga aagcttcaaa acaaaaccac agggtttgag
     1981 acagttcccc agaatgcaaa taggagaacc aaacatttgc atccgaatgc aaaagcagtg
     2041 gttgtccgtt gggaaaagtc agaatagaga aaagtctttg aggccttcaa gacaaatcaa
     2101 atctctggac tgaatcctgc cccggtgcgt cacgtttagc tgactgaaca ctggctgtcc
     2161 ccacaacgat gagtacacca atcctgttgt tcgtaaacca ggctttcact tctcccctgg
     2221 ggagtgctgc ctgcatcaca cagagacctt cagaagcctg ctataatctt caggacccac
     2281 gtacagcagt ccaacggcag actggcgcag ctgtacccca gggtgcagtt tctctgtagc
     2341 tccatgcttt ccgtaatcct agctgcctgc tccagctgct gacaggactg ccatcttctg
     2401 caacctccag gatcaggaaa aagaaagagg cctcgaagct tccaaatcac ttcctcttgg
     2461 cccaggaaca atggctgcca taccagaaga aggctcttgt gtcaacttca aagaaatgat
     2521 gtttattgac aacacacttt accttatacc tgaagataat ggagacttgg aatcagacca
     2581 ctttggcaga cttcactgta caaccgcagt aatgcggagc ataaatgacc aagttctctt
     2641 cgttgacaaa agaaacccgc ctgtgttcga ggacatgcct gatatcgacc gaacagccaa
     2701 cgaatcccag accagactga taatatatat gtacaaagat agtgaagtaa gaggactggc
     2761 tgtgacccta tctgtgaagg atggaaggat gtctaccctc tcctgtaaaa acaaaatcat
     2821 ttcctttgag gaaatgaatc cacctgaaaa tattgatgat ataaaaagtg atctcatatt
     2881 ctttcagaaa cgtgtgccag gacacaacaa aatggaattt gaatcttccc tgtatgaagg
     2941 acactttcta gcttgccaaa aggaagatga tgctttcaaa ctcgttttga aaaggaagga
     3001 tgaaaatggg gataaatctg taatgttcac tcttactaac ttacatcaaa gttaggtatt
     3061 aaggtttctg tattccagaa agacgattag tatacacgag ccttatgata acctactctg
     3121 tatttctatg acaaaatacc tgaggccgca tgatttatag agtaaacaag tttaattgtc
//
