LOCUS       XM_006240732            5218 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IKAROS family zinc finger 4 (Ikzf4),
            transcript variant X1, mRNA.
ACCESSION   XM_006240732
VERSION     XM_006240732.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427287.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006240732.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5218
                     /gene="Ikzf4"
                     /note="IKAROS family zinc finger 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     ESTs, 25 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 27 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100361923"
                     /db_xref="RGD:2319157"
     CDS             52..1812
                     /gene="Ikzf4"
                     /codon_start=1
                     /product="zinc finger protein Eos isoform X1"
                     /protein_id="XP_006240794.1"
                     /db_xref="GeneID:100361923"
                     /db_xref="RGD:2319157"
                     /translation="MHTPPALPRRFQGGGRVRTPGSHRQGKDNLERELSGGCAPDFLP
                     QAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVE
                     MYSDEESSRLLGPDERLLDKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLK
                     CDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCP
                     FCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQS
                     LSTDAQTLAGQPGDEIRDLEMVPDSMLHPSTERPTFIDRLANSLTKRKRSTPQKFVGE
                     KQMRFSLSDLPYDVNPSGGYEKDVELVAHHGLEPGFGGSLAFVGTEHLRPLRLPPTNC
                     ISELTPVISSVYTQMQPLPSRLELPGSREAGEGPEDLGDGGPLLYRARGSLTDPGASP
                     SNGCQDSTDTESNHEDRIGGVVSLPQGPPPQPPPTIVVGRHSPAYAKEDPKPQEGLLR
                     GTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGY
                     HSQDRYEFSSHIVRGEHKVG"
ORIGIN      
        1 cctggaaggt gagtggctgg gctcacccct gcctgccacc aagacgcaga catgcacaca
       61 ccacccgcac tccctcgccg tttccaaggc ggcggccgcg ttcgcacccc agggtctcac
      121 cggcaaggga aggataatct ggagagggag ctctcaggag ggtgtgctcc ggatttcttg
      181 cctcaggccc aggactccaa ccattttata atggaatctt tattttgtga aagtagcggg
      241 gactcatctc tcgagaagga gttccttggg gccccagtgg ggccctcggt gagcacccca
      301 aacagccagc actcttcacc cagccgctcg ctcagtgcca actccatcaa ggtggagatg
      361 tacagcgatg aggagtcgag cagactgctg gggccggatg aacggctcct ggataaggat
      421 gacagtgtga ttgtggagga ctcattgtcg gagcccttgg gctactgcga cggaagcgga
      481 ccagagcctc actcccctgg cggcatccgg ctacccaacg gcaaactcaa gtgcgacgtc
      541 tgtggcatgg tctgtattgg acccaatgtg ctcatggtac acaagcgcag ccacactggg
      601 gaaaggccct tccactgcaa tcagtgtggt gcctccttca cacagaaggg gaatctgctg
      661 cgtcacatca agctgcactc aggggagaag cccttcaaat gtcccttctg caactacgcc
      721 tgccgccggc gtgacgccct cactggccac ctccgcacac actcagtctc ctctcccacc
      781 gtgggtaaac cctacaagtg caactactgt ggccggagct acaaacagca aagtaccctc
      841 gaggagcaca aggagcggtg ccacaactac ctacagagtc tcagcactga tgcccagacg
      901 ttggctggcc agccaggtga tgaaatccgt gacctggaga tggtgcctga ctcaatgctg
      961 cacccatcaa cagagcggcc aactttcatc gaccgtttgg ccaacagcct caccaaacgc
     1021 aagcgctcca ccccacagaa gtttgtagga gaaaagcaga tgcgcttcag cctctcagac
     1081 cttccctatg atgtgaaccc cagcggtggc tatgaaaagg acgtggagct ggtggcacac
     1141 catggtctgg agcctggctt cggagggtct ctagcctttg tgggtactga gcaccttcgt
     1201 cccctccgcc ttccgcccac caactgcatc tcagaactca cacccgtcat cagttctgtg
     1261 tacacccaaa tgcagcccct ccccagccga ctggagcttc cagggtcacg agaagcaggt
     1321 gagggacccg aggacctggg agacggaggt cccctccttt atcgagcccg aggctctttg
     1381 actgaccccg gggcatcccc cagcaatggc tgccaggact ccacagatac agagagcaac
     1441 catgaagatc ggattggcgg ggtggtatcc ctccctcagg gtcccccacc tcaacctcct
     1501 cccaccatag tggtgggccg gcacagtccc gcctatgcca aagaggaccc caaaccacaa
     1561 gaggggttgt tgcggggcac cccaggcccc tccaaggaag tgcttcgggt ggtgggtgag
     1621 agcggtgagc ctgtgaaggc ctttaagtgt gaacactgcc gcatcctctt tctggaccac
     1681 gtcatgttca ccatccacat gggttgccat ggcttcagag accctttcga gtgtaacatc
     1741 tgtggttatc acagccagga tcggtatgag ttctcttccc acatcgtccg gggggaacat
     1801 aaggtgggct agaaacctct ctccccaagc cagctctcgg ccccgccccg ccccgccccg
     1861 ccccgccccg ccccacctac aggtgtctaa cccaatccct gttataccct aaggagtttt
     1921 gcgttgtagc cccatccact ggccacctca cttcacactt gactctgacc cgtctttgcc
     1981 tgttcccctc taccctgacc agtttgagca ttgcgaccag acaagtctct tgcttacatt
     2041 tctccttcta acctctctcc ccggcacatt tgctctttta attagtgact tttccttggc
     2101 cttttttaat tgactgaaat ctctggtcac tccttcactc ttctgccctt ggctcccttc
     2161 tgctctaagc ctagactttt ttattattat tattattttt tattttgtgg atcccacatc
     2221 ctccgacagc tccaggggtt ggaagctcct ctcggtgcta agagacgttg agcttcttgc
     2281 tttaatcctc acccttattt atctgaccct tcacttttga tgctgatacc tcccaacggc
     2341 cccaccttag gtctgtggca ttatctcctc tctgggaccc ttcaacccgg cactccatac
     2401 ctcttgtgcc cactcactct aggcagcttg cactattctt aaatgaatga agaatttcct
     2461 catctgcagg taggaggggc tgtagaaact ctccctaggc actgtggact gagggtcctc
     2521 ttgacctcac ctgggaatcc aagatcccta aaagctacat tcaggatctc cctctaggat
     2581 gtgagaccac cctttcctct ccctggctcc cccctcgaca ccactctggt ctcaactttc
     2641 cactcctttc agtggtggct tttctctcct tggaacgccc ccattttata ttctcagggg
     2701 ctaaagctag gcctgcaacc ctctctctga cacaccgaga gctgctggca cgtagctgag
     2761 aaccagggca tggggaaggg gatgggtggg aatctctttt ccacctttca aactctttta
     2821 cttcagtgac cttcctaggc tctcaggact ccttctgtcc ccatcttagg agaaaccagt
     2881 gggttgctgc tcaatgacca ggggctctct caaccccatc agtcacgctg cctttttcct
     2941 cttccttcca gcaggactca cagtcacgtt cccaggctcc tgggccctgt tatgatcaca
     3001 atggcaggga gaaagggacg tctcttttct ctctgccaac tttcagtata accaaaaaat
     3061 tgtcccagga tgaatgacag gtgtgtgccc gtcaaccctt ctaccgtgtc ctagcaaaaa
     3121 tgggacggac gcaactggga gtcaccccca ctgcccttcc acatctagct ccgacacatg
     3181 gcaggagagg cagtcttctc tggtggtcgc agagactctg gctattcaga tatggaggat
     3241 tcgtgagacc atgcaggagg aggcataact ccattgctgt ggaagtctct ctatagttcc
     3301 ctgccaaggc cacaaccatc ccactctcgg cttctctgag attcaaacca aaggctgttt
     3361 ttctatattt aaagaaaaca agaaaagaaa aaaaaaagca aagaaaagaa accaaacaca
     3421 acacctcata agttatagtc ttggtcttcc ccctcccttt ctcttcctct ctgtccatct
     3481 tcttttccat gggccctttc tctctctttt gcctctccct actttcctcg atccctgtta
     3541 gggatgtcga gaggcaggat aaagggtggg ctagatcaga tcctgggact ggggctctta
     3601 agcattctga agagagtcta ctttccccta tcacaagaag ggtggcgggg gtgggggtgg
     3661 gggaaaaacc actttcttct cttcctttgt ggcaccgctt ccaagaagga ccagattggc
     3721 agagagaagc tttctggggt ggttcttctt ccctgacaat gtagcaataa gcgggtgctg
     3781 ccaaaggcag agaactgggt ggtcctgaga gaagtaaagg gtcttcataa cagaactttg
     3841 gccctaattc ctccttgggc cagcagcaca gctgaggtca ctggctgggc ttgtcctgaa
     3901 ctactctggt tgttaggcct cttcccatta tacctgctcc cacctcttct gtgtctgcca
     3961 ccacatattt gaggatacct cagaaggact agttcctccg aggcattaga gccttagagt
     4021 gccccaccac tccctttgtc tagtcagcct tagcacctgt gagctcccag aaacacgaag
     4081 gactatactc ctccttctcc gaggctatac taatgcccat gagagcagag gtggagggac
     4141 aagaccaggt gctagggagg agaggccttt gtctctctcc agcccaccac tgcactttaa
     4201 ccagggtctt aggtacaaaa tgctactttt cagagccttc cagctctgga acctcaaaca
     4261 tcctcatgct ctctcccaga tccttttgca ttgaaaaaca aaaacaaaaa aaacaaaaaa
     4321 agtaaaagaa gaaaacagta agaacaacaa aaccaaacca ccaaaaccca cccagagaaa
     4381 agaggtgttc tcttttttta ttacttttca aaaacaacac cccaaaaaag tgggggaaag
     4441 ggagagaatt tctaaataga cacttttcca gacctttgtg tgtgtgtgag tgtgtgtgtg
     4501 tgtgtgtatg tgtgtgtgtg tgtgtgtgct cgtctgtgtc caagctgcag gtggaatttt
     4561 ataatacttc tggcagcttc tttccttgtg tacataatat atatatattt ttaatcagaa
     4621 attatgaaga tcaaaaatag aataaacaca gaagcaagtg caataccacc tctccttctc
     4681 cccaccgttc ctctgcagcc tgttcagtgt cccctttgac ccttgaccct tgacctcgtg
     4741 tcccttcctc tggttcctga ctttccctct ttttaaagag tttttctcct ttctcaaagg
     4801 gagttaaacc agcttttgag acttactgca aagcattttg tatatgtaac atactgtaag
     4861 taaatatttg tgtaatggag aaatactact gtaagttttg tactgtactg gctgaaggtc
     4921 tgttataaat aaacacgagt aatttaacac ccctgtttgt tcttggagac tccctttccc
     4981 ttgttttcct tctgggagga aggcagactt cataccaact atttatctgt tcaagacata
     5041 gacaagtcta agactgagtg gaaagccaga cactactaaa gctgttggtc tagcaggaca
     5101 gttgtttctt ttctttttaa agacaggggt gtctctcttt gtaacccagg tggaactcac
     5161 agaaatctac ctgcttccgc atcccaaagt ctgtaattaa agatgtgggc caccatga
//
