LOCUS       XM_039092063            2414 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IKAROS family zinc finger 1 (Ikzf1),
            transcript variant X7, mRNA.
ACCESSION   XM_039092063
VERSION     XM_039092063.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092063.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2414
                     /gene="Ikzf1"
                     /gene_synonym="RGD1562979"
                     /note="IKAROS family zinc finger 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 73 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:305501"
                     /db_xref="RGD:1562979"
     CDS             97..1488
                     /gene="Ikzf1"
                     /gene_synonym="RGD1562979"
                     /codon_start=1
                     /product="DNA-binding protein Ikaros isoform X5"
                     /protein_id="XP_038947991.1"
                     /db_xref="GeneID:305501"
                     /db_xref="RGD:1562979"
                     /translation="MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQ
                     NSKSDRGMASNVKVETQSDEENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTAL
                     SGVGGIRLPNGKLKCDICGIVCIGPNVLMVHKRSHTGERPFQCNQCGASFTQKGNLLR
                     HIKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVIKEETNHSEMAEDLCKIGAERSL
                     VLDRLASNVAKRDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAESLRPLVQ
                     TPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREASP
                     SNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDA
                     FRVVSTSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNMCGYHSQDRYEFS
                     SHITRGEHRYHLS"
ORIGIN      
        1 gcgctgcgcg cgggggtggc ggcggcgcgc cgagcgggcc cggcgcgggc aagcgggctg
       61 cagccgccgg cggcgccagc agataatctg aagacaatgg atgtcgatga gggtcaagac
      121 atgtcccaag tttcaggaaa ggagagccct ccagtcagtg acactccgga tgaaggggat
      181 gaacccatgc ctgtccccga ggacctgtcc acctctggag cacagcagaa ctccaagagt
      241 gatcgaggca tggccagtaa tgttaaagta gagactcaga gtgatgaaga gaatgggcgt
      301 gcctgtgaaa tgaatgggga atgtgcagag gatttacgaa tgcttgatgc ctcaggagag
      361 aaaatgaatg gctcccacag ggaccaaggc agcacggctt tgtcaggagt tggaggcatt
      421 cgacttccta acggaaaact aaagtgtgat atctgtggga tcgtttgcat cgggcccaat
      481 gtgctcatgg ttcacaaaag aagtcatact ggtgaacggc ctttccagtg caaccagtgt
      541 ggggcctcct ttacccagaa aggcaaccta ctgcggcaca tcaagctgca ctcgggcgag
      601 aagcccttca aatgccatct ctgcaactat gcctgccgcc ggagggacgc cctcaccggc
      661 cacctaagga cgcactccgt cattaaggaa gaaactaacc acagcgaaat ggcagaggac
      721 ctgtgcaaga taggagcaga gaggtccctt gttctggaca ggctggccag caacgtcgcc
      781 aaacgagaca agtgcctgtc agacatgccc tatgacagtg ccaactatga gaaggatgag
      841 atgatgacat cccacgtgat ggaccaggcc atcaacaatg ccattaacta cctgggggct
      901 gagtccctgc gcccgttggt gcagacaccc cctggtagct ccgaggtggt gccggtcatc
      961 agttccatgt accagctgca caagcccccc tcagacggcc caccacggtc caaccactca
     1021 gcacaggaca gcgccgtgga gaacttgctg ctgctgtcca aggccaagtc cgtgtcatca
     1081 gagcgggagg cctccccaag caacagctgc caagactcca cggatacaga gagcaacgcg
     1141 gaggaacagc gcagcggtct catctaccta accaaccaca tcactccgca tgcgcgcaac
     1201 gggctggctc tcaaggagga gcagcgcgcc tacgaggtgc tgagggcagc ctcagagaac
     1261 tcgcaggacg ccttccgtgt ggtcagcacg agtggtgagc agctgaaggt gtacaagtgc
     1321 gaacactgcc gcgtgctctt cctggatcat gtcatgtaca ccatccacat gggctgccat
     1381 ggcttccggg atccctttga gtgtaacatg tgtggttatc acagccagga caggtacgag
     1441 ttctcttccc acatcacacg gggggagcat cgctaccacc tgagctaaac ccagccaggc
     1501 cccactgaag cacaaagata gctgggcatg cctctttccc agcagctgga cccacggcgg
     1561 acaatgttgg gagtggattt gcaggcagca tttgttcttt tacgttggtt gtttgagatt
     1621 tgatttgcgt ttagaagaca agtttttaat gttagagaca ggattccatt gcatcaggaa
     1681 cgttcagaac acccatcctt ctagacggtt ttgttgactg ctagctgaga tttccctggt
     1741 atgtggcttc ctaacgctct ccctacccgc cccaccccca aaacagagcc cgaatcttca
     1801 gagaaattaa ttaaacaatt acccaagtag gagcaaggtg gatttttccc taagcagagt
     1861 ttataccaca aagattctcc aagtcctcca aaacagcaca gggacatcag cctgtgcaga
     1921 gaccagggcc gaaggctgaa cttagaaagc tactattagg ccatgtattg cacggcaatg
     1981 cggtgtcgga acaagatgtt tgaggtgctg aagggaaggg attggagagc catgtggctc
     2041 ttcttcattt gcctgatcac actcagcctc ctgagggctt gatgcccagt aagatgagct
     2101 cactgctctt gtgatcgttt ttctatcagt tccgtgcctt taatggcccc aaagctcatc
     2161 actgcatttt agaacccaat cctgaaattg agaccttgtt ttaaacttct gatactgtaa
     2221 aacttcttgg aagccaaagc tttcttccaa gccccatccc cagttatctt ggttcctgtt
     2281 cttccctggg ctgatagttc cgggacctgc tattccatga aaacaagcac aacccaccct
     2341 tcacttcaac tgaacccctg ttctgattat agctatggac tcggctgtct tgataaatgt
     2401 ctttccctgc tctg
//
