LOCUS       NM_001009430            3096 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus IKBKB interacting protein (Ikbip), transcript
            variant 1, mRNA.
ACCESSION   NM_001009430 XM_235036
VERSION     NM_001009430.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Hofer-Warbinek,R., Schmid,J.A., Mayer,H., Winsauer,G., Orel,L.,
            Mueller,B., Wiesner,Ch., Binder,B.R. and de Martin,R.
  TITLE     A highly conserved proapoptotic gene, IKIP, located next to the
            APAF1 gene locus, is regulated by p53
  JOURNAL   Cell Death Differ 11 (12), 1317-1325 (2004)
   PUBMED   15389287
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Oct 12, 2022 this sequence version replaced NM_001009430.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2316611.1,
                                           SRR26643288.29447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-227               JAXUCZ010000007.1  27467097-27467323
            228-345             JAXUCZ010000007.1  27474778-27474895
            346-3096            JAXUCZ010000007.1  27477588-27480338
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..3096
                     /gene="Ikbip"
                     /gene_synonym="IKIP; RGD1305457"
                     /note="IKBKB interacting protein"
                     /db_xref="GeneID:314730"
                     /db_xref="RGD:1305457"
     exon            1..227
                     /gene="Ikbip"
                     /gene_synonym="IKIP; RGD1305457"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1179
                     /gene="Ikbip"
                     /gene_synonym="IKIP; RGD1305457"
                     /note="isoform 1 is encoded by transcript variant 1;
                     inhibitor of nuclear factor kappa-B kinase-interacting
                     protein; IKK-interacting protein; i kappa-B
                     kinase-interacting protein"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B
                     kinase-interacting protein isoform 1"
                     /protein_id="NP_001009430.2"
                     /db_xref="GeneID:314730"
                     /db_xref="RGD:1305457"
                     /translation="MSEVKSRKKPGPKVAAPEPEKRSDGRKNPEARGGAGWADPRTGL
                     SLLSLATSLGLAWLVFQQSEKFAKVENQYRLLQTESSEFQGLQSKISLISNKLESTEN
                     TLQEATSSMSLMTQFEQEVAGLQRSIHDIENSEEMLTQKLQNLNEKFQNITDLWKRTL
                     VEMSDNTAVFKSEAKSTHSEVTLKINSAEQEIKLLTERLKDLEDSTLRNIRTVSRQEE
                     EDLLRVEAQLSSDTKAVEKLEEEQRTLLARDEDLTDKLSSYEPKVEECKAHLPTIENA
                     VHSVLRVSQDLIGTERKMEELTVQMFNMEDDMLKAVSEIMEMQNTLEGIQYDNSLLKM
                     QNELVVLKGKVHDFMAYSSAGEKGTLEEYNLENKGTDDY"
     exon            228..345
                     /gene="Ikbip"
                     /gene_synonym="IKIP; RGD1305457"
                     /inference="alignment:Splign:2.1.0"
     exon            346..3096
                     /gene="Ikbip"
                     /gene_synonym="IKIP; RGD1305457"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtcccacgg tccccctgta aagccatcct ggcttcgaaa tcttcagggc tccagacatg
       61 tctgaagtga agagccgaaa gaagccggga cctaaggtgg ctgcccctga gccagagaag
      121 cggagtgatg gcaggaaaaa ccccgaggcg cgagggggcg cgggctgggc ggacccccgc
      181 acggggctca gcctgctgtc tctggcgaca agcctgggcc tggcctggct tgtatttcaa
      241 cagtcagaaa agtttgcgaa ggtcgaaaac cagtaccggt tactgcaaac agagagcagc
      301 gagtttcaag gactccagag taaaatcagc ttaatttcca acaagcttga gtctactgaa
      361 aataccctgc aggaagctac atcatccatg tctttgatga cccagtttga acaggaagta
      421 gctggcctcc aaagatccat acatgacatt gagaatagtg aagagatgct cacacaaaag
      481 ttgcaaaacc ttaatgagaa attccagaac atcacagatc tctggaagag aacactggtg
      541 gaaatgagcg ataacacggc cgttttcaaa tccgaagcga agagtacaca ttctgaagtc
      601 accctgaaga ttaactcagc cgagcaggaa ataaaattgc tcaccgagcg cctgaaagat
      661 ttggaagaca gcacactacg aaacatcaga acagtgagca ggcaagaaga ggaggatctt
      721 ctgcgagtag aggcgcagct tagctcggat acaaaagcag ttgagaagct agaagaagag
      781 cagcgcacgc tcctagccag agatgaagat ttgaccgata agctttccag ctacgagccc
      841 aaagtggagg agtgcaaggc gcatttgcca accatagaga atgccgtcca ctccgttctc
      901 agagtctctc aggatctgat agggacggaa aggaagatgg aggaactgac tgtgcagatg
      961 ttcaatatgg aagacgatat gctgaaggca gtgtctgaaa tcatggagat gcagaacacc
     1021 ctcgagggaa ttcagtatga caacagctta ttaaagatgc aaaacgaact ggttgttctc
     1081 aaaggaaaag ttcacgattt catggcatat tcaagtgcag gggaaaaggg gactttggaa
     1141 gaatataacc tagaaaataa gggaactgat gattattaag tttactgcac atcttctgaa
     1201 gggccatgct actaagtagg aatcagtcag tcctgcattt tttaattgtt gtattctgcc
     1261 tcactttacc caaggatagg aggagtctgc atctaatcaa acttttatct ttttaagctc
     1321 tgaaacctac tttaactatt ttcatagaaa tagttctggg ctggagagat ggctcagcgg
     1381 ttaagagcac ccgactgctc ttccaggggt catgagttca attcccagca accacatggt
     1441 ggctcacaac catctgtaaa gaaatagttc taaaatatat attgctccac tttttaagca
     1501 gtatatttaa tatttacacg tcttccaata attaatagac atcattatga attgtattat
     1561 tgtatctatc cattatgggg atagagatac agaaaatcta tggcaaatat taaaaccttt
     1621 taccatttca ctgtggccct cgttttacga tttctaagct atgtctgttt ctcacaactg
     1681 tttctgtcac ttgctcttgc agccagttgg caacatacct tcctctccca ggttttcggt
     1741 tttggttttt tgttttgttt attcagacaa tcaagttcat aggaagtgga tgtaaaataa
     1801 aggataatct tcctgcagga gaaccagggg gctctcctgt gaggtaatgc cacattatga
     1861 gaactgaaaa gtattttcat ttttgcaaag gttctaaact gtgtgacaga gacttgtaag
     1921 aggtttaaaa tgtgagtaaa tatgttctta ttttgccctc attaatagcc tttttctatt
     1981 agctggttat gttttaaaat atgagtttat ggagtatctt aaaatatgga gtatttaaag
     2041 tttattgttt acctggactt ttatttctaa actttgaact gtgtgacagt agagtttact
     2101 gaatgcaatt aataggtact gaaaataaaa acatgttgat aagcctgtgc ctattttaaa
     2161 gattaaacaa catagcgata aattgtgaca acaatgacat atttatgtca ttattttaaa
     2221 gattctttaa cgtttgaaac taaatttgtc tcacattatt aatttaaaaa gattagagct
     2281 ggggccaggc atggtagtgc acacctttaa taccagcact ccagaggcac aggcagttgg
     2341 atctctaagt tcaaggtcac cctggtctac gtagtgagat tgtgtctcta aagggggagg
     2401 gggctaggag ataattcaag aaatgaggag catggtgtgt aagcacaagg acctgggttt
     2461 gatactagac actgacataa aaagctgggt ctagcatcac ctgcctgtag gactagccct
     2521 ggaaaacaga gacatgagga aacttgaata tgtgtgtctg agtattcctt tgctaagaaa
     2581 tttgctctgg ggctaaagag atggctccgt ggtcaagggc cccggttgtt cttgcagggg
     2641 acttgggttc gattcccagc tcccacagga tggctcacaa gcatctgtca ctcagctccc
     2701 aggatctcca gcacaggctt ttggttcctg catataccat gcatggcgtg catgtggtac
     2761 acagacatat atacaggcaa aatattcata tgcataaaat aaatatatct taatgtccta
     2821 tttagcagag ttgtcattgt ggagatctag atacgtttaa cgaattttcc tttgtttctt
     2881 tttttgtttg ttttagggct ttttttgttt tgattttgag acagggtttc gagatgtagc
     2941 ccaggttagt gttaagacac cattttcctg cttctgtatt tcaagtggca ggaaacacaa
     3001 gtgtatccat tttgttgtgc tttatggcat gtcaccggta ttacaatcca cacttttgta
     3061 tctctgtaat tgataataaa ttttatatcc gttaac
//
