LOCUS       NM_001376950            5044 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus immunoglobulin superfamily, member 9B (Igsf9b),
            mRNA.
ACCESSION   NM_001376950 XM_006226347 XM_006242739
VERSION     NM_001376950.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5044)
  AUTHORS   Woo,J., Kwon,S.K., Nam,J., Choi,S., Takahashi,H., Krueger,D.,
            Park,J., Lee,Y., Bae,J.Y., Lee,D., Ko,J., Kim,H., Kim,M.H.,
            Bae,Y.C., Chang,S., Craig,A.M. and Kim,E.
  TITLE     The adhesion protein IgSF9b is coupled to neuroligin 2 via S-SCAM
            to promote inhibitory synapse development
  JOURNAL   J Cell Biol 201 (6), 929-944 (2013)
   PUBMED   23751499
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000008.1.
            
            [WARNING] On Mar 13, 2025 this sequence was replaced by
            NM_001376950.2.
            
            On or before Dec 5, 2019 this sequence version replaced
            XM_006242739.3, XM_006226347.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760433 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-338               JAXUCZ010000008.1  33971779-33972116
            339-536             JAXUCZ010000008.1  33982295-33982492
            537-683             JAXUCZ010000008.1  33984368-33984514
            684-835             JAXUCZ010000008.1  33989337-33989488
            836-953             JAXUCZ010000008.1  33989774-33989891
            954-1095            JAXUCZ010000008.1  33991152-33991293
            1096-1241           JAXUCZ010000008.1  33991471-33991616
            1242-1384           JAXUCZ010000008.1  33993926-33994068
            1385-1525           JAXUCZ010000008.1  33994369-33994509
            1526-1642           JAXUCZ010000008.1  33994600-33994716
            1643-1793           JAXUCZ010000008.1  33994965-33995115
            1794-1917           JAXUCZ010000008.1  33996000-33996123
            1918-2093           JAXUCZ010000008.1  33998544-33998719
            2094-2320           JAXUCZ010000008.1  34000145-34000371
            2321-2405           JAXUCZ010000008.1  34001143-34001227
            2406-2567           JAXUCZ010000008.1  34003269-34003430
            2568-2613           JAXUCZ010000008.1  34004163-34004208
            2614-4269           JAXUCZ010000008.1  34004745-34006400
            4270-4391           JAXUCZ010000008.1  34013702-34013823
            4392-5044           JAXUCZ010000008.1  34017028-34017680
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..5044
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /note="immunoglobulin superfamily, member 9B"
                     /db_xref="GeneID:315510"
                     /db_xref="RGD:1564717"
     exon            1..338
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..4600
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /note="protein turtle homolog B"
                     /codon_start=1
                     /product="protein turtle homolog B precursor"
                     /protein_id="NP_001363879.1"
                     /db_xref="GeneID:315510"
                     /db_xref="RGD:1564717"
                     /translation="MIWYVATLIASVISTRGLVAQVAHGLREEPEFVTARAGEGVVLR
                     CDVIHPVTGQPPPYVVEWFKFGVPIPIFIKFGYYPPHVDPEYAGRASLHDKASLRLEQ
                     VRSEDQGWYECKVLMLDQQYDTFHNGSWVHLTINAPPTFTETPPQYIEAKEGGSITMT
                     CTAFGNPKPIVTWLKEGTLLSASGKYQVSDGSLTVTSVSREDRGAYTCRAYSIQGEAV
                     HTTHLLVQGPPFIVSPPENITVNISQDALLTCRAEAYPGNLTYTWYWQDENVYFQNDL
                     KLRVRILIDGTLIIFRVKPEDAGKYTCVPSNSLGRSPSASAYLTVQYPARVLNMPPVI
                     YVPVGIHGYIRCPVDAEPPATVVKWNKDGRPLQVEKNLGWTLMEDGSIRIEEATEEAL
                     GTYTCVPYNTLGTMGQSAPARLVLKDPPYFTVLPGWEYRQEAGRELLIPCAAAGDPFP
                     VITWRKVGKPSRSKHNALPSGSLQFRALSKEDHGEWECVATNVVTSITASTHLTVIGT
                     SPHAPGSVRVHVSMTTANVSWEPGYDGGYEQTFSVWYGPLMKRAQFGPHDWLSLSVPL
                     GPSWLLVDSLEPETAYQFSVLAQNRLGTSAFSEVVTVNTLAFPVTTPEPLVLVTPPRC
                     LTANRTQQGVLLSWLPPANHSFPIDRYIMEFRVGERWEMLDDAIPGTDGEFFAKDLSQ
                     DTWYEFRVLAVMQDLISEPSNIAGVSSTDIFPQPDLTDDGLARPVLAGIVATICFLAA
                     AILFSTLAACFVNKQRKRKLKRKKDPPLSITHCRKSLESPLSSGKVSPESIRTLRAPS
                     ESSDDQGQPAAKRMLSPTREKELSLYKKTKRAISSRKYSVAKAEAEAEATTPIELISR
                     GPDGRFVMGPSEMEPSVKGRRIEGFPFAEETDMYPEFRQSDEENEDPLVPTSVAALKP
                     QLTPMSSSQDSYLPPPAYSPRFQPRGLEGPSGLGGRLQATGQARPPAPRPFQHGQYYG
                     YLSSSSPGEVEPPPFYMPEVGSPLSSVMSSPPLHTEGPFGHPTIPEENGENASNSTLP
                     LTQTPTGGRSPEPWGRPEFPFGGLETPAMMFPHQLHPCDVAESLQPKPCLPRGLPPAP
                     LQVPAAYPGMLSLEAPKGWVGKSPGRGPIPAPPATKWQERPMQPLVSQGQLRHTSQGM
                     GIPVLPYPEPAEPGGHGGPSTFGLDTRWYEPQPRPRPSPRQARRAEPSLHQVVLQPSR
                     LSPLTQSPLSSRTGSPELAARARPRPGLLQQAEMSEITLQPPAAVSFSRKSTPSSTGS
                     PSQSSRSGSPSYRPTMGFTTLATGYPSPPPGPAPPAPGDNLDVFGQTPSPRRMGEEPL
                     RPEPPTTLPTSGILPPAPGNAAVPERLEALRYQRIKKPKKSSKGSSKSKKRSDGSASQ
                     DQQLPNSQVLWPDEAVCLRKKKRHSRPDPFARLSDLCHRQLPEDQTAILNSVDHDDPG
                     HATLL"
     exon            339..536
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            537..683
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            684..835
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            836..953
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1095
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1241
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1384
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1525
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1526..1642
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..1793
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1917
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            1918..2093
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            2094..2320
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2405
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            2406..2567
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            2568..2613
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            2614..4269
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            4270..4391
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
     exon            4392..5044
                     /gene="Igsf9b"
                     /gene_synonym="RGD1564717"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgggccaca ggacaagctc agctaggctt caccgtggac ctggctgcgc tctgcctccg
       61 ttggcagtgc aggtgccgct gcgccggggc ccgggaggct gcgcgcgccg agacgagagg
      121 agccagggag ggatggagag cgggccgccc gggctacaga agcaccggca aggggcgtag
      181 gcgggcgaga agcgggcatt gaggcaccag aagtgtgcag acgcaggagc actttgcgat
      241 aggatgaggc tcttggctgg cgcgcggtag tactatgatt tggtatgtgg ccactttgat
      301 agcaagtgtg atcagcaccc gaggtcttgt ggctcaagtt gcccacggcc tgcgagagga
      361 acctgagttt gtgaccgctc gtgccggcga aggtgtggtt ctgcgatgcg acgtcatcca
      421 cccagtgaca ggacagcccc caccctatgt cgtagagtgg ttcaagtttg gggtccccat
      481 ccctatcttc atcaagtttg gctactatcc cccgcatgtg gaccctgagt atgcaggccg
      541 ggccagtctt catgataaag catctctgcg gctggagcag gtgcgctctg aggaccaggg
      601 ttggtacgag tgcaaagtgc tcatgctgga tcagcagtat gacacattcc acaacggcag
      661 ctgggtccat ctcaccatta acgcccctcc cacctttaca gaaacacccc cccagtacat
      721 cgaggccaag gaaggtggga gtattaccat gacttgcacg gcttttggga accctaaacc
      781 catcgtcacc tggctcaagg aagggaccct cctcagtgct agtggaaagt atcaggtgag
      841 tgacggtagc ctaacggtga cgtcagtcag tcgggaggac agaggcgcct atacctgtcg
      901 agcatatagc atccagggtg aggctgtgca cacaacccat ctgcttgttc aagggcctcc
      961 cttcattgtt tcccctcctg agaacatcac cgtcaacatc tcccaggatg ctctgcttac
     1021 ctgcagggca gaggcgtatc ccggcaacct cacctacacc tggtactggc aggatgagaa
     1081 cgtctacttc cagaatgacc tgaagctaag ggtgcggatc ctgattgatg ggacactgat
     1141 catcttccga gtgaagccag aggatgctgg gaagtatacc tgtgtcccta gcaacagcct
     1201 ggggcgttcc ccctctgcct cagcatacct gactgtgcag tacccagccc gtgtcctcaa
     1261 catgccccct gtaatttatg tgcccgtggg aatccatggc tatatccgct gtcctgtgga
     1321 tgcagagccg cctgctactg tggtgaagtg gaataaggat ggccggcccc tgcaggtaga
     1381 gaagaacttg ggttggacct tgatggagga tggctctatt cgaattgagg aggccacaga
     1441 ggaggctctt ggcacttaca cctgtgtgcc ttacaacact ttggggacca tgggccagtc
     1501 tgcccctgcc cggctcgtcc tgaaggaccc cccgtatttc acggtgctac ccggctggga
     1561 gtacaggcag gaggctggcc gggagctgct catcccctgt gcagctgcag gggacccctt
     1621 ccctgtcatc acctggagga aggtagggaa gcccagcaga agcaagcaca atgcactgcc
     1681 cagcgggagt ctgcagtttc gtgccctgag taaggaggac cacggggagt gggaatgtgt
     1741 tgccaccaac gtggtcacaa gcatcactgc cagcacccac ctcactgtca tcggcaccag
     1801 tccccatgcc ccaggcagtg tccgggtcca tgtctccatg acaactgcca acgtgtcctg
     1861 ggagccaggc tatgatggag gctatgagca gacattctca gtttggtacg gacctctgat
     1921 gaagcgggct cagtttgggc cccacgactg gctgtccttg tcagtgccac tgggccccag
     1981 ctggctgctg gtagacagcc tggagcctga gactgcatac cagttcagtg tcctggccca
     2041 gaacaggctg gggaccagcg ccttcagtga ggtggtcact gtgaacactt tagcattccc
     2101 tgttacaact ccagaacccc tggtgctggt gaccccacca aggtgcctca cagccaaccg
     2161 gacccagcag ggtgtgctcc tgtcctggct ccctcctgcc aaccacagct tccccatcga
     2221 ccgctacatc atggagttcc gagttgggga gcgctgggag atgctagatg atgccatacc
     2281 aggcaccgat ggagaatttt ttgccaagga tctgtcacag gatacctggt atgagttccg
     2341 ggttttggct gtcatgcagg atctgatcag cgagcccagc aacatcgccg gtgtctccag
     2401 cacagacatc ttcccgcagc cggacctgac tgatgatggg ctggcccggc cagtgttggc
     2461 tgggatagtg gccaccatct gcttcctggc ggctgccatc ctcttcagca ctctggctgc
     2521 ctgctttgtc aacaagcagc gcaaacgcaa actcaagcgg aagaaagatc ctccgctctc
     2581 catcactcac tgtaggaaga gtcttgagtc tcccttgtcc tctggcaagg tgagtcctga
     2641 gagtatccgc acactccgag ccccgtctga atcctctgac gaccagggcc agccagcagc
     2701 caagaggatg ctgagcccta caagggagaa agagctgtcc ctgtacaaaa aaaccaagag
     2761 ggctatcagc agcaggaagt atagcgtggc caaggctgag gccgaagcag aggccaccac
     2821 acccattgaa ctgatcagta gaggcccgga tggccgcttc gtcatgggcc cgtcggagat
     2881 ggagccctct gtgaagggcc ggcgaatcga aggcttcccc ttcgctgagg agacggacat
     2941 gtaccctgag ttccggcagt cagatgagga gaatgaagac ccactggtac ccacgtctgt
     3001 ggctgctctg aagcctcaac tgacccctat gtcttccagc caggactctt acctgccacc
     3061 accagcatac agccctcggt tccagcctcg agggctcgag ggccccagtg gactgggagg
     3121 acgactccag gctactggcc aagcgaggcc tcctgcccct cggcccttcc agcatggcca
     3181 gtattatggg tacctcagca gcagcagccc tggggaggtg gagcctccac ccttctatat
     3241 gccagaagtg ggcagcccct tgagctcagt catgtcgtcc ccacccctgc acaccgaggg
     3301 gccttttggc caccctacca tccctgagga aaacggagag aatgcttcta acagcacttt
     3361 gcccttgact cagacaccta caggagggcg ctcccctgag ccctggggcc ggccagaatt
     3421 tccctttggg ggactggaga ccccagctat gatgttcccc caccagctgc acccctgtga
     3481 tgtggccgag agtttgcagc ccaagccctg tctgccccga ggactgcccc cagccccgct
     3541 ccaggtgcct gcagcctatc caggcatgct atctctggag gcaccaaagg gctgggtagg
     3601 caagtcacct ggcaggggtc ccatcccggc gccccctgcc accaagtggc aggaaagacc
     3661 tatgcaacct ctggtcagcc aagggcagct aagacatacc agccaaggta tggggatacc
     3721 ggtgttgcct tacccggagc cagccgagcc cggggggcac ggtggcccca gcacatttgg
     3781 cctggacact cggtggtatg agccccagcc ccggccccgg cccagccccc ggcaggcccg
     3841 gcgtgccgag cccagtttac atcaagtggt gctacagccc tcccggctct cacctctgac
     3901 ccaaagcccc cttagttccc gcactggctc ccctgagctc gctgctcgtg cccgacctcg
     3961 accaggcctc ctgcagcagg cagagatgtc agagatcacc ctgcagccgc cagccgcggt
     4021 cagcttctct cgcaagtcaa caccatcatc cacgggatct ccttcacaga gcagccgcag
     4081 tgggagcccc agctacaggc ccacaatggg cttcactact ctggccacag gctacccttc
     4141 tccaccacct ggccctgccc ctccggcgcc aggggacaac ttggatgtgt ttggacagac
     4201 gccttcccct cggaggatgg gggaggagcc actccggcca gagcccccaa caaccttacc
     4261 tacttcagga atacttccac ctgcacccgg gaacgctgct gtgcctgaga ggctggaggc
     4321 tctgagatac caacggataa agaagcccaa aaagtcatcc aagggctctt cgaagtcaaa
     4381 gaaacgatcc gacggttctg cctcccagga tcagcagctt cccaactctc aggttctgtg
     4441 gcccgacgaa gctgtctgcc tcagaaagaa gaagagacac tctcgtcctg atccctttgc
     4501 ccggctttca gacttgtgcc accgtcagct tccagaagac cagacggcca tcctcaacag
     4561 tgtggatcat gatgacccag gccacgctac tctgctatga cttgacacca ttctaaatgt
     4621 ccccagggtg gggtgctagg ctaaaggggg cagagaggga ccattgtaca gggccttgtc
     4681 ctcctctgcc catcatggga tggctcaggc ccctgacctg tgtgtattcc ctcatgccag
     4741 tggggaatac acccactatc tagccagcta gccttgccca tgggacagag gactagggga
     4801 agagctttta actgtgggtc agagttggga gtatgtgggg atagaagaca tctgtctcta
     4861 tgccacctct cccactttac tagattggtt cttctcacct cttccaacgt cttaggaagt
     4921 gaggaaacgg aaagcaatgg cttttagtaa tgcatttgtt tcacttttcc aagtcctggg
     4981 agggggttag agttatatcc gaccctccta actccacata tatatagata tagatacaaa
     5041 tgca
//
