LOCUS       NM_001107197            4126 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus immunoglobulin superfamily, member 9 (Igsf9),
            mRNA.
ACCESSION   NM_001107197 XM_001055810 XM_222905
VERSION     NM_001107197.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4126)
  AUTHORS   Mishra,A., Traut,M.H., Becker,L., Klopstock,T., Stein,V. and
            Klein,R.
  TITLE     Genetic evidence for the adhesion protein IgSF9/Dasm1 to regulate
            inhibitory synapse development independent of its intracellular
            domain
  JOURNAL   J Neurosci 34 (12), 4187-4199 (2014)
   PUBMED   24647940
REFERENCE   2  (bases 1 to 4126)
  AUTHORS   Shi,S.H., Cox,D.N., Wang,D., Jan,L.Y. and Jan,Y.N.
  TITLE     Control of dendrite arborization by an Ig family member, dendrite
            arborization and synapse maturation 1 (Dasm1)
  JOURNAL   Proc Natl Acad Sci U S A 101 (36), 13341-13345 (2004)
   PUBMED   15340157
REFERENCE   3  (bases 1 to 4126)
  AUTHORS   Shi,S.H., Cheng,T., Jan,L.Y. and Jan,Y.N.
  TITLE     The immunoglobulin family member dendrite arborization and synapse
            maturation 1 (Dasm1) controls excitatory synapse maturation
  JOURNAL   Proc Natl Acad Sci U S A 101 (36), 13346-13351 (2004)
   PUBMED   15340156
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473985.1.
            
            On or before Oct 26, 2007 this sequence version replaced
            XM_222905.4, XM_001055810.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
FEATURES             Location/Qualifiers
     source          1..4126
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q24"
     gene            1..4126
                     /gene="Igsf9"
                     /note="immunoglobulin superfamily, member 9"
                     /db_xref="GeneID:304982"
                     /db_xref="RGD:1304566"
     exon            1..113
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            114..363
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     CDS             306..3845
                     /gene="Igsf9"
                     /note="protein turtle homolog A; immunoglobulin
                     superfamily member 9A; dendrite arborization and synapse
                     maturation protein 1; igSF9A"
                     /codon_start=1
                     /product="protein turtle homolog A precursor"
                     /protein_id="NP_001100667.1"
                     /db_xref="GeneID:304982"
                     /db_xref="RGD:1304566"
                     /translation="MIWCLRLTILSLILSQGADGRRKPEVVSVVGRAGESAVLGCDLL
                     PPAGRPPLHVIEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRLQTGASLQIEGLRVED
                     QGWYECRVLFLDQHSPEQDFANGSWVHLTVNSPPQFQETPPLVLEVKELEAVTLRCVA
                     LGSPQPYVTWKFRGQDLGKGQGQVQVRNGTLWIRRVERGSAGDYTCQASSTEGSVTHT
                     TQLLVLGPPVIVVPPNNNTVNASQDVSLACRAEAYPANLTYSWFQDRINVFHISRLQS
                     RVRILVDGSLWLQATQPDDAGHYTCVPSNGFPHPPSASAYLTVLYPAQVTVMPPETPL
                     PIGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLVIALGNEDALGE
                     YSCTPYNSLGTAGSSPVTRVLLKAPPAFIDQPKEEYFQEVGRDLLIPCSARGDPPPIV
                     SWAKVGRGLQGQAQVDSNNSLILRPLTKEAHGRWECSARNAVAHVTISTNVYVLGTSP
                     HVVTNVSVVPLPKGANVSWEPGFDGGYLQRFSVWYTPLAKRPDRAHHDWVSLAVPMGA
                     THLLVPGLQAYTQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAVPRLPPTEMPPPL
                     SPPRGLVAVRTPRGVLLHWDPPELIPERLDGYILEGRQGSQGWEILDQGVAGTEIQLL
                     VPGLIKDVLYEFRLVAFADSYVSDPSNIANISTSGLEVYPSRTQLPGLLPQPVLAGVV
                     GGVCFLGVAVLVSILAACLMNRRRAARRHRKRLRQDPPLIFSPRGRSGPHSAPGSDSP
                     DSVTKFKLQGSPVPSLRQSLLWGEPARPPSPHPDSPLGRGPLPLEPICRGPDGRFVMG
                     PTVAPPQEKLCLERSEPRTSAKRLAQSLDCSSSSPSGVPQPLCITDISPVGQPPAAMP
                     SPLPGPGPLLQYLSLPFFREMNVDGDWPPLEEPTPASPPDFMGSHPCPTSSFLPPPDS
                     PPTNLRAVLPGTLMGVGVSSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQSSGRGS
                     ASFLRPPSTAPSAGGSYLSPAPGDTSSWASGPERWPRREHVVTVSKRRNTSVDENYEW
                     DSEFPGDMELLETWHPGLASSRAHPELEPELGVKTPEKSCLLNTTHAPGPEARCAALR
                     EEFLAFRRRRDATRARLPVCQQSISYPEQATLL"
     exon            364..552
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            553..705
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            706..860
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            861..978
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1120
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1266
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1267..1409
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1550
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1551..1667
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1818
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1819..1942
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1943..2118
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2119..2369
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2370..2454
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2455..2631
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2632..2674
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2675..3535
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            3536..3663
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
     exon            3664..4126
                     /gene="Igsf9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagcgtgta gttgtggggg acagagggaa gcgggagggc tctagagaga agtgaaatta
       61 tctgggggag cagaactagg gtagttttgg aagcgaagtg gaattactga taggtctggt
      121 ggttctccct cgggtgttga gtgagctagg caccaactgg aagagtgaga gctgaaactg
      181 gttgcctgag gcggatcaga acgtgactgg tgctctctgg gattgccggg cagtggacat
      241 tcctccggcc cctccatctg ggctcctgtg gataggaggg gccgggcgag caggccagct
      301 gggctatgat ttggtgtctc cgtctgacca tcctcagcct gatcctcagc caaggggctg
      361 acggtcgaag gaagcctgag gtggtctctg tggtgggccg ggctggggag agtgcagtgc
      421 tgggctgtga cttgctgcct ccagctggcc gcccccctct gcatgtcatc gagtggctgc
      481 gctttggatt cctgcttccc atcttcatcc agttcggcct ctactctccc cgaattgacc
      541 ctgattacgt gggacgagtc cgtctgcaga caggagcatc tctccagatt gaggggctcc
      601 gggtggaaga ccagggttgg tacgagtgcc gcgtgctctt cctggaccaa cacagccctg
      661 agcaggattt tgccaatggc tcctgggtgc acctgacagt caattcgccc cctcagttcc
      721 aggagacgcc tcccttagtg ttggaagtga aggaactgga ggctgttacc ttgcgctgtg
      781 tggcccttgg cagccctcag ccttatgtga cttggaaatt ccgaggacaa gaccttggca
      841 aaggccaggg tcaggtgcaa gtgcggaatg gaacactgtg gatccgtcgg gtggagcgag
      901 gcagcgctgg agactacacc tgccaagcct ccagcactga gggcagcgtc acccacacta
      961 ctcagctgct ggtgctagga ccccctgtca ttgtggtgcc ccccaacaac aacacagtca
     1021 atgcctccca ggatgtctct ttggcttgcc gggctgaggc ataccctgca aacctcacct
     1081 atagctggtt ccaggatcgt atcaatgtct tccacatcag ccgcttacag tctcgagtgc
     1141 ggatcctggt agatggaagc ctgtggctac aggccactca gcctgatgac gccggccact
     1201 atacctgtgt tcccagcaat ggctttccgc atccaccctc agcttctgcc tatctcactg
     1261 tgctctaccc agcccaggtg acagtcatgc ctcccgagac acccctgccc attggcatgc
     1321 gtggggtgat acggtgtccg gttcgtgcta atcccccact actgtttgtc acctggacca
     1381 aagacggaca ggccttacag ctggacaagt tccctggctg gtccctgggt ccagaaggct
     1441 ccctcgtcat tgccctggga aatgaggatg ccttgggaga atactcctgc acgccctaca
     1501 acagtcttgg tacggctgga tcctcccctg tgacccgagt gctgctcaag gctcccccgg
     1561 cttttataga ccagcccaag gaagagtatt tccaagaagt agggcgggac ctactcatcc
     1621 cttgctccgc ccggggagac cctcctccta ttgtctcttg ggccaaggtg ggacgggggc
     1681 tgcagggcca ggcccaggtg gacagcaaca acagcctcat ccttcgaccc ctgaccaagg
     1741 aggcccatgg acgatgggaa tgcagcgcca gaaatgctgt agcccacgtg accatttcta
     1801 ccaacgtata cgtgctaggc accagtcccc atgtcgtcac caatgtgtct gtggtacctt
     1861 tacccaaggg tgccaatgtc tcttgggagc ctggctttga cggtggctat ctccagagat
     1921 tcagtgtctg gtatacccca ctagccaagc gtcctgaccg agctcaccat gactgggtat
     1981 ctctggctgt gcctatgggg gctacacacc tcctagtgcc agggctgcag gcctacacgc
     2041 agtatcagtt cagtgtcctt gctcagaaca agctgggcag tgggcctttc agcgagatcg
     2101 tcctgtctat acctgagggg cttcctacca caccggctgt ccctaggctt cctccgacag
     2161 agatgccacc tcccctgtcc cctcctagag gtttggtggc agtgaggaca ccccgggggg
     2221 tccttttgca ttgggatccc ccagaactca tccctgagag actggatggc tacatcctgg
     2281 agggacggca aggctcccaa ggctgggaga tcctggacca aggtgtggct ggcacggaaa
     2341 ttcagctgct ggtccctggc ctcatcaagg acgttctcta tgagtttcgc ctcgtggcct
     2401 ttgctgatag ctacgtcagt gaccccagta acatagccaa catctccact tccggcctgg
     2461 aggtgtaccc atcccgcaca cagctaccgg gtctcctgcc ccagcctgta ttggctggtg
     2521 ttgtgggtgg agtctgcttc ttgggcgtgg ccgtccttgt gagcatcctg gctgcctgcc
     2581 tcatgaatcg gcgaagggct gctcgccgcc acaggaaacg tctacgccag gatccacctc
     2641 tgatcttctc tccacgtggg aggtcaggcc cacactctgc tcctggctca gacagccctg
     2701 acagcgtgac caagttcaag cttcaaggct ccccagtccc cagcctacgc cagagtctgc
     2761 tttgggggga gcctgcccga ccacctagcc ctcacccgga ttctccactt ggtcggggac
     2821 ctttaccatt agagcccatt tgcaggggcc cagatgggcg ctttgtgatg ggacccactg
     2881 tggcaccccc acaagaaaag ttatgcctgg agcggtcaga acctcggacc tcagctaaac
     2941 gcttggccca atcccttgac tgtagcagta gcagccccag tggggtccca cagcccctct
     3001 gcatcacaga catcagccct gtggggcagc ctcctgcagc catgcctagc cccctaccag
     3061 gtccgggacc gctgctccag tacctgagcc tgcctttctt ccgagagatg aatgtggatg
     3121 gggactggcc acctcttgag gagcccacac ctgcctcacc tccagatttc atgggtagtc
     3181 atccctgccc cacctcatct ttccttcctc cacccgactc acctcctaca aacctcaggg
     3241 cagtgcttcc tgggacactg atgggggtcg gggtctcctc agagccccct tacacagctt
     3301 tggctgactg gacactgagg gagcgggtgt tgccaggcct tctctctgct gcccctcgtg
     3361 gcagcctcac cagccagagc agtgggcggg gcagtgcttc cttcctgcgc cctccctcca
     3421 cagccccctc tgcaggggga agctacctca gtccagctcc aggagacaca agcagctggg
     3481 ccagtggccc tgaaaggtgg ccccgaaggg agcacgtggt gacagtcagc aaaaggagga
     3541 acacctctgt ggatgagaac tatgaatggg actcggaatt cccgggggac atggagctgc
     3601 tggagacttg gcacccaggc ttggccagtt ctcgggccca ccctgagctt gagccagagt
     3661 taggtgtcaa gactccagag aagagctgtc tcctgaacac cacccacgct cccggccccg
     3721 aggcccgctg tgctgctctt cgggaggaat tcctggcttt ccgacgacgc agggacgcta
     3781 ccagggcccg gttaccagtc tgtcagcagt ccatctctta ccctgaacag gctactctgc
     3841 tatgagcaca cttagtgtga aactaagaaa ggcatatgga tctgccaagg aggccaagac
     3901 ctgggctcca agctggggca ctgcccctac ctctttgtgt ccagtgatag accctgatgg
     3961 tggcctggtg gtaggcttgt gtgagcttgg tatagagagg atatactgac tctttaattg
     4021 agtctgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg gtttatggtg tgggtgcagg
     4081 tttttttttt tttaaaaaca ggtgaataaa agtctgcaaa aatgtt
//
