LOCUS       NM_001006990            2164 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus immunoglobulin superfamily, member 5 (Igsf5),
            mRNA.
ACCESSION   NM_001006990 XM_221523
VERSION     NM_001006990.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Harita,Y., Miyauchi,N., Karasawa,T., Suzuki,K., Han,G.D., Koike,H.,
            Igarashi,T., Shimizu,F. and Kawachi,H.
  TITLE     Altered expression of junctional adhesion molecule 4 in injured
            podocytes
  JOURNAL   Am J Physiol Renal Physiol 290 (2), F335-F344 (2006)
   PUBMED   16118391
  REMARK    GeneRIF: The subcellular localization of JAM4 was altered in
            puromycin aminonucleoside (PAN) nephropathy.
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Hirabayashi,S., Tajima,M., Yao,I., Nishimura,W., Mori,H. and
            Hata,Y.
  TITLE     JAM4, a junctional cell adhesion molecule interacting with a tight
            junction protein, MAGI-1
  JOURNAL   Mol Cell Biol 23 (12), 4267-4282 (2003)
   PUBMED   12773569
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097947.1.
            
            On Jun 12, 2005 this sequence version replaced NM_001006990.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097947.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..2164
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /note="immunoglobulin superfamily, member 5"
                     /db_xref="GeneID:304000"
                     /db_xref="RGD:1359642"
     exon            1..342
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            343..420
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     CDS             363..1472
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /note="junctional adhesion molecule 4; JAM-4; cell
                     adhesion molecule JCAM"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 5 precursor"
                     /protein_id="NP_001006991.1"
                     /db_xref="GeneID:304000"
                     /db_xref="RGD:1359642"
                     /translation="MEGSWRDVLAVLVILAQLTVSGSSYQIIEGPRNVTALKGSEARF
                     NCTVTHGWKLIMWALNGIVELSLTSQKPIITSNRFTSASYNSTDSFISEMIIHNVQLN
                     DSGPVQCSLQNSNVFGFAFLSVQVMGTLNIPSSNLIVTEGEPCNVTCYAVGWTPLPNI
                     SWELEVPVSHSSYYSFLEPGNSLRVLSVLDLTPLGNGTLTCVAEMKDLQASESLTVNL
                     TVVQPPPDSIGGEGQALPTWAIILLAVAFSLLLILIIALIIIFCCCCVSRREKEESTY
                     QNEIRKSANVRTGKADPETWLKSGKENYGYKSDEARAAQIASLPPKSGEVSLPEQRSS
                     LPQQELDKHRPSPVTHPRVSFDIASPQKIRNVTIV"
     exon            421..738
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            739..1038
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1179
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1204
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1305
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1376
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..2138
                     /gene="Igsf5"
                     /gene_synonym="Jam4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctagggctc tgccgggatt cagaggaggg tctcagggtc cggaagctag gaaagctgtc
       61 ttcatttctt agacaaactt gtaaatgccc tctcccttga agagaaactt catggggacc
      121 agggtgttcc gttgccactg gggattctga gagggcagat tacaagaggt ctgtccaagt
      181 gaggaggcag gtcctggtca gtgaggagtc aggattctag tgagagagaa gaccccagtg
      241 aagacgggca ccatggcggc gaggaaacag ttctgaaggc aggtgcacgg attccaaggt
      301 gtagcagaag tgctgggatt gaaggaagcc cccggctcag aggtaaggaa gatcatgctg
      361 agatggaggg cagctggaga gatgtcctgg ctgtgctggt catcctggct cagttgacag
      421 tttccggatc cagttatcag atcatagaag gtcctcggaa tgtaacagcc ctaaagggct
      481 cggaggctcg cttcaactgc actgtgactc atggctggaa gcttatcatg tgggctctca
      541 acggtatcgt ggagctgagt ctcacctccc agaaacccat catcaccagc aaccgcttca
      601 cctctgccag ctacaacagt actgacagct tcatctctga gatgatcatc cacaatgtac
      661 agctcaacga ctcggggccc gtgcaatgta gcctgcagaa cagcaatgtg tttggattcg
      721 cctttctctc ggtgcaagtc atggggactc tgaacattcc tagcagcaac cttatagtca
      781 ctgagggtga gccctgtaac gtgacttgct atgccgtggg ctggacccca ctcccgaata
      841 tttcctggga gcttgaggtt cctgtaagtc attcaagcta ctattccttt ctggagccgg
      901 gcaactctct gagggtcttg agtgtcctgg atctcacacc actgggcaac gggaccttga
      961 cttgtgtggc agagatgaag gacttgcagg ccagcgagtc cttaactgtc aacctgactg
     1021 tggttcagcc tccaccggac agtattggcg gggaaggcca agcgctgcca acctgggcca
     1081 tcatcctcct ggcagtggcc ttttccttac tcttgatcct gatcattgct ctgattataa
     1141 tattctgttg ctgttgtgtc tccaggagag aaaaggaaga atctacttat caaaatgaaa
     1201 taaggaaatc tgcaaatgtg aggacaggca aagcagatcc cgagacatgg ttaaaaagtg
     1261 ggaaggaaaa ctatgggtac aaatcggatg aagcaagggc tgcacaaatt gcttctctcc
     1321 ctcctaaatc tggtgaagtt agccttccag aacaacgcag tagccttcct caacaggaac
     1381 ttgataaaca tcggcccagc ccagtgactc atccacgagt ttcctttgac atcgccagtc
     1441 ctcagaagat cagaaatgtg actatagtgt aataataaag acttctcatg gctgtgcttg
     1501 gtgtacacac accgggtcaa tatcattctc ttctgtatcc tgagaccgca tctcagcttt
     1561 gccaaagagg ccgcatcaga gtcaccagag ctggtgtttt atagcaacag gaggagttgg
     1621 ttttcctcct tccaagaaga atttgatctt gaggtgtatc atggttttgg tgaattcctt
     1681 aaggtgaccg agtaaaacat gagggtctgt catggtgaca ttcctcatga cttgacactc
     1741 ctgctaaccc agcgaaaggc agatatagat cctgccacga ccttcagaat gcttctgttt
     1801 tctgagatcg tggtaatatg gtctttatgt gtgtttcaca gcgagggaca tcactgaacc
     1861 ttattacaga accaagagcc taacaactag catcaactgt gtcttgtaag taactggccc
     1921 ctggagctca ggaatgcaac aagaggagaa gcaacgcaca tgtccggatg ctttccagaa
     1981 gacagtcttt cgcatacgct cccttgtcct tgtcaccatg gttttgggtg aattaggtgt
     2041 tggattctgc ctgatgaggg acaaagctca tgttccgcca gcatcatgaa cgaacgggga
     2101 agagatatat actatttaat aaacaatcaa aaagccaaaa aaaaaaaaaa aaaaaaaaaa
     2161 aaaa
//
