LOCUS       XM_039097476            2829 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus immunoglobulin superfamily member 22
            (Igsf22), mRNA.
ACCESSION   XM_039097476
VERSION     XM_039097476.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097476.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 25% of CDS bases
            frameshifts          :: corrected 6 indels
            internal stop codons :: corrected 12 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               JACYVU010000033.1  21494990-21495098   c
            110-201             JACYVU010000033.1  21491495-21491586   c
            202-348             JACYVU010000033.1  21490991-21491137   c
            349-349             "N"                1-1
            350-382             JACYVU010000033.1  21490958-21490990   c
            383-508             JACYVU010000033.1  21488206-21488331   c
            509-555             JACYVU010000033.1  21487264-21487310   c
            556-557             "NN"               1-2
            558-621             JACYVU010000033.1  21487200-21487263   c
            622-623             "NN"               1-2
            624-710             JACYVU010000033.1  21487113-21487199   c
            711-981             JACYVU010000033.1  21485105-21485375   c
            982-1083            JACYVU010000033.1  21484743-21484844   c
            1084-1154           JACYVU010000033.1  21484291-21484361   c
            1155-1364           JACYVU010000033.1  21484026-21484235   c
            1365-1560           JACYVU010000033.1  21483685-21483880   c
            1561-1561           "N"                1-1
            1562-1682           JACYVU010000033.1  21483564-21483684   c
            1683-1922           JACYVU010000033.1  21482262-21482501   c
            1923-2135           JACYVU010000033.1  21481051-21481263   c
            2136-2199           JACYVU010000033.1  21480739-21480802   c
            2200-2362           JACYVU010000033.1  21480153-21480315   c
            2363-2457           JACYVU010000033.1  21479885-21479979   c
            2458-2550           JACYVU010000033.1  21479168-21479260   c
            2551-2551           "N"                1-1
            2552-2625           JACYVU010000033.1  21479094-21479167   c
            2626-2627           "NN"               1-2
            2628-2829           JACYVU010000033.1  21478892-21479093   c
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2829
                     /gene="Igsf22"
                     /note="immunoglobulin superfamily member 22; The sequence
                     of the model RefSeq transcript was modified relative to
                     its source genomic sequence to represent the inferred CDS:
                     inserted 9 bases in 6 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:108349764"
                     /db_xref="RGD:11452860"
     CDS             1..2829
                     /gene="Igsf22"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 9 bases in 6 codons;
                     substituted 12 bases at 12 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:31..33,aa:OTHER)
                     /transl_except=(pos:409..411,aa:OTHER)
                     /transl_except=(pos:826..828,aa:OTHER)
                     /transl_except=(pos:841..843,aa:OTHER)
                     /transl_except=(pos:1252..1254,aa:OTHER)
                     /transl_except=(pos:1291..1293,aa:OTHER)
                     /transl_except=(pos:1360..1362,aa:OTHER)
                     /transl_except=(pos:1429..1431,aa:OTHER)
                     /transl_except=(pos:1447..1449,aa:OTHER)
                     /transl_except=(pos:1798..1800,aa:OTHER)
                     /transl_except=(pos:2251..2253,aa:OTHER)
                     /transl_except=(pos:2257..2259,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: immunoglobulin superfamily
                     member 22"
                     /protein_id="XP_038953404.1"
                     /db_xref="GeneID:108349764"
                     /db_xref="RGD:11452860"
                     /translation="MATAQHQQMVXEYVSMEFSSSTTHMETFSQTTKTVGEWLTSDDS
                     GNYRYITNNKHTDAITLSLLTTESRVSLTQKKKQEVTNEKEMLMTWAKVPSKDFAKVY
                     VEYGSPDLGRLLKKXKREIEVEGYGAYSSGQLMRXLGTKCTLVTTNINMSNASAYSLS
                     GRYVDKHHGNEPKVMEEVKLVAVTVXQTAVFEIHPSKEENDSAWQFNXGRGNKYDLRP
                     SENGLTHTVKIKNARLSNILSTGLPFRSMSSFKNACVKERSRSPLECELMSKDASVAX
                     EEDGXLLSNSLKYSASHTGKQTELVISDTQSGDDREYTTVAMEDGHPVNTAILTISSN
                     PSYPKLLDPNHPLLPLHDCSTLPLTTSHLATMKSGMSTMHSALAELCMTKGDVDLANA
                     CTHTCSSSPQITSLPGMSMVKQGEEXHAHFPNMDTKHEXKYTFWENGTENEVSVSTVG
                     KALXSCLVTMKVTKMPFQARLFPKVTXFKDGMXVTKRKHVSVELREDQDLLTISNCIH
                     KGISLVLFSLRNXHIATATVNLNVLGEGTAMELFESPQLSVIKEGGWDGGPGQIKAVG
                     KKSWIKTGEADDKVPSFTTEEGKAYMRCILVVSXEGGSDPPETEETFPHNPIVERYCL
                     VLRNAPKGQDRAVWPLRQDLPSSYNLEMRAEGSKKSTKCMEGGISGTRYVAVVLTKMP
                     KNFFHIQIVSKAGVGDPVELDKDPYHVTTRSHRLGDTDGILPSVLEQSDILKDSITIK
                     GWKTITKGKNXPXFLINNIKCSDYREYQILLQNEFGVTHYAVYMLVAGTEGSRGHLQP
                     PFYTLCSSPQLLKQPKAQLLRPANLKLFEEAPNTVTLTWKQNPDLQDGDAYYXRGMKV
                     TPTWFTATVGALSDKYMVAXSRKCYFRVVAQNEIGDSDPLYSMDSWLANKDHSEYRTW
                     NLCVVSGIPDGEEDIGSSITPPEIPESL"
ORIGIN      
        1 atggcgactg ctcaacacca gcagatggta taggaatatg tgtccatgga gttctctagc
       61 tccaccaccc acatggagac cttctcccag acaaccaaga ccgtgggaga gtggctgacc
      121 tcagatgact caggcaacta caggtacatt acaaacaata agcacacaga tgccattaca
      181 ctgtccttgc tgacaacaga gtctagggtt tccctgaccc aaaaaaagaa gcaggaggtg
      241 acaaacgaaa aggagatgct gatgacttgg gccaaggtac ccagtaagga ctttgcaaag
      301 gtctatgtgg agtatggctc ccctgacttg ggaaggctgc tcaaaaaant aaagagggaa
      361 atagaagtgg agggatatgg agcctacagc tctggtcagc tcatgaggta gttgggtacc
      421 aagtgcacgc tggttaccac taacataaac atgagcaatg ccagtgccta cagcctgagt
      481 gggagatacg tggataagca ccatggcaat gagccaaagg tcatggaaga agtgaaactg
      541 gtggcagtga ccgtgnngca gacagctgtg tttgagatcc acccctccaa ggaagagaat
      601 gactctgcgt ggcagttcaa cnnaggaagg ggtaacaagt atgatctcag accatctgag
      661 aatggtctga ctcacacagt taagatcaaa aatgccagac tcagcaacat tctgtctacg
      721 ggccttccct ttagatctat gagcagcttc aaaaatgcat gtgtaaaaga gaggagccgc
      781 tcaccccttg aatgtgagct gatgtctaag gatgcatcag tagcctgaga ggaagatggg
      841 tgactgctgt caaatagcct caagtacagt gcgagccaca caggcaagca aactgagttg
      901 gtcattagtg atacacagag cggagatgac agggaataca ccacagtggc catggaggat
      961 gggcaccctg tgaatacagc aattctgacc atctccagca accctagtta tcccaaactt
     1021 cttgatccca accatccctt actccctctc catgactgct ccacactgcc tcttaccacc
     1081 tcacatctgg caaccatgaa gagtggcatg tcaaccatgc actcagccct ggctgagttg
     1141 tgtatgacaa aaggagatgt tgacttggcc aatgcttgca ctcatacatg ctcctcctca
     1201 cctcagatca caagcttgcc tggtatgtcg atggtaaagc agggtgagga ataacatgct
     1261 cattttccca acatggacac gaagcatgaa tgaaaataca cattctggga aaacggcaca
     1321 gaaaatgaag tctccgtatc cactgtaggt aaggccctct aaagctgtct tgtgaccatg
     1381 aaggtgacta agatgccctt ccaagcaagg ctgttcccca aagtgaccta gttcaaggat
     1441 ggtatgtagg tgaccaagag gaagcatgtg tctgtggaac tcagggaaga ccaggacctg
     1501 ctcaccatct ccaattgtat acataaaggc atcagcttgg tcctattcag cctcagaaat
     1561 ngtcacatag caacggcaac tgtgaacctc aatgtgctag gtgagggcac agccatggag
     1621 ttgtttgaga gccctcagct ctcagtaatc aaagagggtg gctgggatgg aggccctgga
     1681 cagataaagg cagttggcaa gaagtcctgg attaagacag gggaggcgga tgacaaagtg
     1741 cccagcttca ccacagaaga gggaaaagct tacatgcgct gtattctggt ggtcagttga
     1801 gagggtggta gtgacccacc tgagactgag gaaacctttc ctcataatcc catagttgag
     1861 agatactgcc tagtgttaag gaacgcacct aagggtcagg atagggctgt ttggccactg
     1921 agacaggacc taccatccag ctacaacctt gagatgagag ctgaaggcag caagaagagt
     1981 acaaagtgca tggaaggcgg catctcaggt acccgctacg tggcagtggt cctcaccaag
     2041 atgccaaaaa acttctttca tatccaaatt gtcagtaagg ctggggttgg ggaccctgtg
     2101 gagctagata aggatccata ccatgttacc accagatctc accggctggg agacacagat
     2161 ggaatacttc ccagtgttct ggagcagtca gacatcttga aagacagcat caccatcaag
     2221 ggctggaaaa ccatcaccaa gggcaaaaat tagccctaat tcctcattaa caacatcaag
     2281 tgttctgact acagagagta tcagatcttg cttcagaatg agtttggagt cacacactat
     2341 gctgtttaca tgctggtagc aggtacagag ggcagcagag gccatttgca gccacccttc
     2401 tacaccctgt gtagctcccc acagctactt aagcaaccta aggcacaact tttgcggcct
     2461 gcaaacctaa agctatttga agaggccccc aacacagtga ctctgacctg gaagcaaaat
     2521 cctgatctcc aagatggtga tgcctactat ngaagaggga tgaaagtcac ccccacctgg
     2581 ttcactgcaa ctgtgggtgc cctcagtgac aagtacatgg tggcanncag caggaaatgc
     2641 tacttcagag tggtggctca aaatgaaata ggtgacagtg acccactgta ctccatggat
     2701 tcctggcttg ccaataaaga ccacagtgaa tacagaactt ggaatctgtg cgttgtgtca
     2761 ggaatccctg atggtgaaga ggacataggg tcctccatta cacccccaga gatccctgag
     2821 tcactctag
//
