LOCUS       NM_001271454            2012 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus immunoglobin superfamily, member 21 (Igsf21),
            mRNA.
ACCESSION   NM_001271454 XM_003754110
VERSION     NM_001271454.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Tanabe,Y., Naito,Y., Vasuta,C., Lee,A.K., Soumounou,Y.,
            Linhoff,M.W. and Takahashi,H.
  TITLE     IgSF21 promotes differentiation of inhibitory synapses via binding
            to neurexin2alpha
  JOURNAL   Nat Commun 8 (1), 408 (2017)
   PUBMED   28864826
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Feb 11, 2021 this sequence version replaced NM_001271454.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399481.2250465.1,
                                           SRR22399481.805834.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-522               JAXUCZ010000005.1  157794769-157795290 c
            523-635             JAXUCZ010000005.1  157702997-157703109 c
            636-757             JAXUCZ010000005.1  157651424-157651545 c
            758-876             JAXUCZ010000005.1  157611087-157611205 c
            877-992             JAXUCZ010000005.1  157581618-157581733 c
            993-1467            JAXUCZ010000005.1  157578614-157579088 c
            1468-1553           JAXUCZ010000005.1  157572873-157572958 c
            1554-1746           JAXUCZ010000005.1  157572212-157572404 c
            1747-1785           JAXUCZ010000005.1  157571846-157571884 c
            1786-2012           JAXUCZ010000005.1  157570964-157571190 c
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2012
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /note="immunoglobin superfamily, member 21"
                     /db_xref="GeneID:298591"
                     /db_xref="RGD:1310117"
     exon            1..522
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     CDS             453..1859
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /note="immunoglobulin superfamily member 21"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 21 precursor"
                     /protein_id="NP_001258383.1"
                     /db_xref="GeneID:298591"
                     /db_xref="RGD:1310117"
                     /translation="MRAAPSLRRASCLLLAAILDLARGYLTVNIEPLPPVVAGDAVTL
                     KCNFKTDGRMREIVWYRVTDGGTIKQKIFTFDAMFSTNYSHMENYRKREDLVYQSTVR
                     LPEVRISDNGPYECHVGIYDRATREKVVLASGNIFLNVMAPPTSIEVVAADSPAPFSR
                     YQAQNFTLVCIVSGGKPAPMVYFKRDGEPIDAVPLTELPASSSGSVQDSRPFRSLLHR
                     DVDDTKMQKSLSLLDTEYRAGRPYTERPSRSLTQDPNLFVQPTTENIPETVVSREFPR
                     WVHSAEPVYFLRHSRTPGSDGTVEVRALLTWTLNPQIDNEALFSCEVKHPALSMPMQA
                     EVTLVAPKGPKIMMTPSRARVGDTVRILVHGFQNEVFPEPMFTWTRVGSRLLDGSAEF
                     DGKELVLERVPAELNGSMYRCTAQNPLGSTDTHTRLIVFENPNIPRGTEDSRGSASGP
                     TGVRLTLVLALTVILELT"
     exon            523..635
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            636..757
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            758..876
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            877..992
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1467
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1553
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1746
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            1747..1785
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
     exon            1786..2012
                     /gene="Igsf21"
                     /gene_synonym="RGD1310117"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcgcgggg cagagcgcgg cggcgcgggc agagcttcgg ctccaaactc cgccgctgcc
       61 gccacggatc cgactccggc cgccgtgggc gccaggagca gccgaccagc cgagagcagc
      121 tgcgctcccc agccaggtcc tgtgcagccc agagcagcca gtgtgtctgg tgcagcccgg
      181 agcatcctag tacagctcag agtagcctgg tggtgtatcc cggagcatcc cggtacagcc
      241 cagagcagcc ccgggtagcc tggcggcccg accacggtag catgaggacg tccccgcggc
      301 gcccctcgct gcccgtcacc gccacggccg gcggcccggg tcataagcgc ttctgagccc
      361 atggcgaggg gacccaccgt cgccaccgcg atcgccgccg ccgccgccgc cgccgccgcc
      421 gcctcggcca gcgccgtcag ctcctgggca ccatgcgagc tgctccaagc ctccgccgcg
      481 cctcctgcct gctgctcgcc gcgatcctgg acctggcgcg cggctacctg acagtgaaca
      541 ttgagcccct tccccctgtg gtggccgggg atgcagtgac cctgaagtgc aacttcaaga
      601 cagacggccg catgcgtgag atcgtgtggt accgggtgac agatggcggc accatcaagc
      661 agaagatctt caccttcgat gccatgttct ccaccaacta ctcccacatg gagaattacc
      721 gcaagaggga ggatcttgtg taccagtcca ctgtgaggct gcctgaggtc cggatctcag
      781 acaatggtcc ctatgagtgc cacgtgggga tctacgaccg agccacgagg gagaaggtgg
      841 tcctcgcctc gggcaacatc ttcctcaacg tcatggctcc tcccacctcc attgaagtcg
      901 tggctgccga ctcccctgcc cccttcagcc ggtaccaggc ccagaacttc acactggtct
      961 gcatcgtgtc aggagggaag ccagcaccca tggtttattt caaacgggat ggggaaccga
     1021 ttgatgccgt gcccctgaca gaactgccag cgtccagctc tggctcggtc caggacagca
     1081 ggcccttccg cagccttctg catagagacg tggacgatac caaaatgcaa aagtcactat
     1141 cccttctgga cactgaatac cgggctggac gtccctacac ggagcgcccc tcgcgcagcc
     1201 tgacccagga ccccaacctc ttcgtgcagc ccaccacgga aaacatacca gagacagtgg
     1261 tgagccgaga gttcccccgt tgggtacaca gtgccgagcc ggtctacttc ctgcgccaca
     1321 gccgcacccc aggcagcgat ggcacggtgg aggtgcgggc cctgctcacc tggaccctca
     1381 acccgcagat cgacaatgag gccctcttca gctgtgaggt caagcaccca gcgctgtcta
     1441 tgcccatgca ggcggaggtc acgctggttg ctcccaaagg acccaaaatc atgatgacgc
     1501 ccagcagagc ccgggttggg gatacagtga ggatcctagt ccacggattt cagaatgagg
     1561 tcttcccaga acccatgttc acgtggacga gagtgggcag ccgcctcctg gatgggagtg
     1621 ctgaatttga cgggaaggag cttgtactgg agcgggtccc tgctgagctc aacggctcca
     1681 tgtaccgctg cactgcccag aacccactgg gctccactga tacacacact cggctcatcg
     1741 tgttcgaaaa cccaaatatc ccaagaggaa ccgaggactc ccgtggttct gcttctggcc
     1801 ccactggcgt ccggctcacc ctggtgcttg ccctgacagt gatcctggag ctgacgtgaa
     1861 gatgccgccc cctcccgatg ctccagcggc ccggcatctc tgcgatcgat tttcatgtct
     1921 tttctaaact atttccagtc ttgttcttag tcttggccca tgtcttggct tcctcactgg
     1981 gtttaattaa acagacagac cgattttccc ca
//
