LOCUS       NM_001013120            3675 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Rattus norvegicus immunoglobulin superfamily, member 11 (Igsf11),
            mRNA.
ACCESSION   NM_001013120 XM_221443
VERSION     NM_001013120.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Jang,S., Oh,D., Lee,Y., Hosy,E., Shin,H., van Riesen,C.,
            Whitcomb,D., Warburton,J.M., Jo,J., Kim,D., Kim,S.G., Um,S.M.,
            Kwon,S.K., Kim,M.H., Roh,J.D., Woo,J., Jun,H., Lee,D., Mah,W.,
            Kim,H., Kaang,B.K., Cho,K., Rhee,J.S., Choquet,D. and Kim,E.
  TITLE     Synaptic adhesion molecule IgSF11 regulates synaptic transmission
            and plasticity
  JOURNAL   Nat Neurosci 19 (1), 84-93 (2016)
   PUBMED   26595655
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Harada,H., Suzu,S., Hayashi,Y. and Okada,S.
  TITLE     BT-IgSF, a novel immunoglobulin superfamily protein, functions as a
            cell adhesion molecule
  JOURNAL   J Cell Physiol 204 (3), 919-926 (2005)
   PUBMED   15795899
REFERENCE   3  (bases 1 to 3675)
  AUTHORS   Watanabe,T., Suda,T., Tsunoda,T., Uchida,N., Ura,K., Kato,T.,
            Hasegawa,S., Satoh,S., Ohgi,S., Tahara,H., Furukawa,Y. and
            Nakamura,Y.
  TITLE     Identification of immunoglobulin superfamily 11 (IGSF11) as a novel
            target for cancer immunotherapy of gastrointestinal and
            hepatocellular carcinomas
  JOURNAL   Cancer Sci 96 (8), 498-506 (2005)
   PUBMED   16108831
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085929.1.
            
            On Apr 20, 2005 this sequence version replaced XM_221443.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085929.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..3675
                     /gene="Igsf11"
                     /note="immunoglobulin superfamily, member 11"
                     /db_xref="GeneID:303926"
                     /db_xref="RGD:1308758"
     exon            1..243
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
     CDS             192..1478
                     /gene="Igsf11"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 11 precursor"
                     /protein_id="NP_001013138.1"
                     /db_xref="GeneID:303926"
                     /db_xref="RGD:1308758"
                     /translation="MTRRRSALASWLLLSLLGVAASLEVSESPGSVQVARGQTAVLPC
                     AFSTSAALLNLNVIWMVIPLSNANQPEQVILYQGGQMFDGALRFHGRVGFTGTMPATN
                     VSIFINNTQLSDTGTYQCLVNNLPDRGGRNIGVTGLTVLVPPSAPNCQIQGSQDIGSD
                     VILLCSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSSGLYQCVAS
                     NAIGTSTCLLDLQVISPQPRSVGVIAGAVGTGAVLIVICLALTSGAFFYWRSKNKEEE
                     EEEIPNEIREDDLPPKCSSAKAFHTEISSSENNTLTSSNTYNSRYWNNNPKPHKNTES
                     FNHFSDLRQSFSGNAVIPSIYANGNHLVLGPHKTLVVTANRGSSPQVMPRNNGSVSRK
                     PWSQHTHSYTVSQMTLERIGAVPVMVPAQSRAGSLV"
     exon            244..407
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
     exon            408..615
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
     exon            616..771
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
     exon            772..894
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
     exon            895..1045
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..3621
                     /gene="Igsf11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggcgggag ctggggggag tggctgcggc ggctagtggt ggccgcggcg gccggcgagc
       61 ccgggacgcc cgagcctgcc ccgagcctca gcggagcgga gtggccttgg cgctcccgtg
      121 ccccgctcgg tccccgctgc accccgccgc ccaggagctc ggcggacggc ggctcccgcg
      181 gcggccccgg catgactcgg cggcgctccg ctctggcgtc ctggctgctc ttgtcgctgc
      241 tcggtgtggc agcatctctg gaagtgtccg agagcccagg cagtgtccag gtggctcggg
      301 gtcagacagc agtcctgccc tgcgccttct ccaccagtgc tgctctcctg aacctcaatg
      361 tcatttggat ggtcattccc ctctccaatg caaaccagcc cgaacaggtc attctctatc
      421 agggcggaca gatgtttgat ggtgccctcc ggttccatgg gagggtagga tttacaggca
      481 ccatgcctgc taccaatgtc tccatcttca tcaataacac acagctgtca gatacgggca
      541 cctaccagtg cttggtgaat aaccttccag acagaggggg cagaaacatt ggggtcactg
      601 gcctcacggt gttagtcccc ccttctgctc caaactgcca aatccaagga tctcaggaca
      661 tcggcagtga cgtcatcctt ctgtgtagtt cggaggaagg catccctcgg cccacttacc
      721 tttgggagaa gttagataat acactcaagc tacctccaac agccactcag gaccaggtcc
      781 aggggacagt caccatccgg aatattagtg ccctctcttc cggtctttac cagtgtgtgg
      841 cttccaacgc catcgggacc agcacctgtc tcctggatct ccaggttatc tcgccccagc
      901 cccggagcgt tggagtgata gccggagctg ttggcactgg tgctgtcctc atcgtcatct
      961 gccttgcact aacttcaggg gcattctttt actggagaag caaaaataaa gaggaggagg
     1021 aggaggaaat tcctaatgaa atcagagagg atgatcttcc acctaaatgc tcttctgcca
     1081 aagcattcca cacagagata tcctcctcag aaaataacac attgacctct tctaatacct
     1141 acaacagtcg atactggaac aacaatccca aaccccataa aaacacagag tcgttcaacc
     1201 acttcagtga cttacgccag tctttctctg gcaatgctgt tatcccgtcc atctatgcaa
     1261 atggaaacca tctggttttg ggtccacata agactctggt agttacagcc aacagagggt
     1321 catcgcccca ggtcatgccc aggaacaatg gttcagtcag caggaagcct tggtctcaac
     1381 acacacattc ctacactgta agccaaatga ccctggagcg aatcggtgca gtgcctgtca
     1441 tggtgcccgc ccagagtcgg gcggggtccc tggtataggg tgactgggga cgctgtgttc
     1501 agaagagaac aaacggactt ccttcaggca agggggagag tgggatgggc gagcgctgga
     1561 aagcgtacac ttttgttacg attgattccc ttagtataaa gcacaaagaa gaaggccgcg
     1621 ctgctgttcc ctgccgctgc agtgtgtgaa gtggcctggg gttattccat cgtgaagact
     1681 caagaagact gtttcccacc acagttgtcc tgagattcag tttaaaaaca aagcatgctg
     1741 catctcaaaa gccgagccga gccaaggaga gtgctagaag cagaggagcg cttaccaccc
     1801 aaacccaggt ccggctggac ccgctcttca gttcttgcct aactcgatca ttttccggac
     1861 ccttaaagtg ccaggtggaa tttacataac gaaattattt ttaaaaaata tatgccctca
     1921 ggggaaagaa aataggagca agctcgtggt atggtctgcc tctctcattt cctttgatgg
     1981 taccagcgac ccggcattcc atctgggctg actttatcat agaggcaaaa tggttcagaa
     2041 cacctgcaac atacacacgc acacgcacac gcacgcacac gcgcgcgcgc gcacacacac
     2101 acgcacacac gcgcgcgcac acgtatacac atacacacgc acgcacacac gcacacatac
     2161 acacgcacac acacgcacac acatacacgc gcgcacacac atacacacac gcgcgcgcac
     2221 acacatacac acacgcgcgc gcacacacgc acacacatgc acatacacgg gtgcacacac
     2281 gcacgaacac acgcatgaac acacgcgcac tcacgcacac acactcacga acacgcactt
     2341 atttatttac ctcctcctga accatgaagt ttgtattggg aactttgcta tattgacaga
     2401 atcttgtctg ttacactctg ggatctctta caggtccacg gcaatttctg ttcttgattt
     2461 cctggggaaa aaaaatattt ttttaaaaga aaactaattt tttttaaata cttgagagac
     2521 agtggactag gaaagcaaga actaccgcct tgtccagtga ttgcattcag tgactcagca
     2581 gagggcccac cccacgagtc ttaggggact gagtgggctg tgctgtaacc agttggagcc
     2641 aggtgggagg ggcctttgtg ttgccagcag ggccccaaag aatcgagatt gtgaacgcaa
     2701 ccttgctgtc acagaggcca ctattaatga ggacagtgcc tgatgccttt tgtactgagg
     2761 aagataattg cctcttgttc gacaagtaga gtttagtagg ttattacaaa aagggcagga
     2821 gttgttttgg ttttgtttct ttcaaaagaa ttttttttcc caaaagaata atgcgggtta
     2881 gacaaacggg ggatcctccc acgtgctcct ggggcctgct cagtatctgg aaatttgggt
     2941 gcgcgatttt cccctaacgc attgcataac caatgtaaaa agactccgcc tccccctttt
     3001 ggctaattac ttggcttggc tggccttgca attcaccaga ttcatttaca gactctgctc
     3061 tatgtcgtgc tctatctgtc tgtctgcact tgttttggtg actatcttgc cttatccact
     3121 ttgctttagg gcaactcatg atgatttctt ctaaaatttg tttttaaatt gtttgtacta
     3181 ctgagcccac aactttcaga ggacatctta tccccccttc ctttcttata tcgctttgtc
     3241 catacttcct gccttcttcc ggtgtccagt gggcacagac ttcacaggga gtgacctact
     3301 gtcttcagtt atttgagtga atggaaacca tcactggctg cacttatttt tccaagaggg
     3361 acatttggga cgtcactgtt gtgaccattt caatattgat aagaagatga atttgctgta
     3421 gtgttagctc cccaccccca tttgatggtt cttgactttg taaaaattta aagaaatgaa
     3481 tgtctatact ttttaaagaa aaatgaaaat accatgtcac gaaaaagatg aaactattag
     3541 atgctgttta gaaagcattt atcttgcatt tctttattct ttctaattac ctaaaattca
     3601 ataaaagttt attcatataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3661 aaaaaaaaaa aaaaa
//
