LOCUS       NM_001108767            6196 bp    mRNA    linear   ROD 24-DEC-2022
DEFINITION  Rattus norvegicus immunoglobulin superfamily, DCC subclass, member
            4 (Igdcc4), transcript variant 1, mRNA.
ACCESSION   NM_001108767 XM_001076376 XM_006226446 XM_017596074 XM_343412
VERSION     NM_001108767.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6196)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 6196)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   3  (bases 1 to 6196)
  AUTHORS   Bonaldo MF, Lennon G and Soares MB.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000198.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001108767.4.
            
            On Feb 10, 2021 this sequence version replaced NM_001108767.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This RefSeq transcript  is based
            on transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760433,
                              SAMN12840107 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                JACYVU010000198.1  27435208-27435303
            97-450              JACYVU010000198.1  27446897-27447250
            451-592             JACYVU010000198.1  27447901-27448042
            593-729             JACYVU010000198.1  27453445-27453581
            730-870             JACYVU010000198.1  27454956-27455096
            871-1026            JACYVU010000198.1  27455851-27456006
            1027-1440           JACYVU010000198.1  27456823-27457236
            1441-1605           JACYVU010000198.1  27457671-27457835
            1606-1743           JACYVU010000198.1  27458334-27458471
            1744-1914           JACYVU010000198.1  27459799-27459969
            1915-2151           JACYVU010000198.1  27461382-27461618
            2152-2253           JACYVU010000198.1  27461693-27461794
            2254-2437           JACYVU010000198.1  27463215-27463398
            2438-2565           JACYVU010000198.1  27463991-27464118
            2566-2736           JACYVU010000198.1  27464262-27464432
            2737-2874           JACYVU010000198.1  27464575-27464712
            2875-2980           JACYVU010000198.1  27466175-27466280
            2981-3209           JACYVU010000198.1  27466750-27466978
            3210-3374           JACYVU010000198.1  27467533-27467697
            3375-6196           JACYVU010000198.1  27468141-27470962
FEATURES             Location/Qualifiers
     source          1..6196
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..6196
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /note="immunoglobulin superfamily, DCC subclass, member 4"
                     /db_xref="GeneID:363081"
                     /db_xref="RGD:1310919"
     exon            1..96
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..3791
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /note="isoform 1 is encoded by transcript variant 1;
                     neighbor of Punc E11"
                     /codon_start=1
                     /product="immunoglobulin superfamily DCC subclass member 4
                     isoform 1"
                     /protein_id="NP_001102237.2"
                     /db_xref="GeneID:363081"
                     /db_xref="RGD:1310919"
                     /translation="MEEAVGTRDCGVLSGSVGAACREAKQDSGELPLPQETTVQLSCD
                     EGPLRVVLGPEQAVVLDCTLGAAAAGPPTTVTWSKDGDVVLERDNLHLLPNGSLRLSS
                     PLEPEDSDDEEALSVWKVIEGSYSCLAHGPLGVVASQVAVVKLATLEDFSLHPESQTV
                     EENGTARFECHTEGLPAPIITWEKDQVTVTEEPRLITLPNGVLQILDVQDSDAGSYRC
                     VATNSARQRFSQEALLSVALRGSLEATRGQDVVIVAAPENTTVVSGQSVVLECVASAD
                     PTPFVSWVRQDGKPISTDVIVLGRTNLLIASAQPRHSGVYVCRANKPRTRDFATAAAE
                     LRVLAAPAISQAPEALSRTRASTARFVCRASGEPRPTLHWLHDGAPLRPNGRVKVQGG
                     GGSLVITQIGLQDSGYYQCVAENSAGTACAAAPLAVVVREGLPSAPTRVKATPLSSSA
                     VLVAWERPELHSEQIIGFSLHYQKARGVDNVEYQFAVNNDTTELQVRDLEPNTDYEFY
                     VVAYSQLGASRTSSPALVHTLDDVPSAAPQLSLSSPNPSDIRVAWLPLPSSLSNGQVV
                     KYKIEYGSGKEDQVFSTEVPGNETQLTLNSLQPNKVYRVRISAGTGAGYGVPSQWMQH
                     RTPGAHNQSHVPFAPAELKVRAKMESLVVSWQPPPHPTQISGYKLYWREVGTEEEADG
                     DRPPGGRGDQAWDVGPVRLKKKVKQYELTQLVPGRLYEVKLVAFNKHEDGYAAVWKGK
                     TEKAPTPDLPIQRGPPLPPAHVHAESNSSTSIWLRWKKPDFTTVKIVNYTVRFGPWGL
                     RNASLVTYYTSSGEDILIGGLKPFTKYEFAVQSHGVDMDGPFGSVVERSTLPDRPSTP
                     PSDLRLSPLTPSTVRLHWCPPTEPNGEIVEYLILYSNNHTQPEHQWTLLTTEGNIFSA
                     EVHGLESDTRYFFKMGARTEVGPGPFSRLQDVITLQETFSDSLDVHSVTGIIVGVCLG
                     LLCLLACMCAGLRRSSHREALPGLSSTATAGNPALYSRARLGPPSVPAAHELESLVHP
                     RPQDWSPPPSDVEDKAKVHSLMGGSVSDCRGHSKRKISWAQAGGPNWAGSWAGCELPQ
                     GSGPRPALTRALLPPAGTGQTLLLQALVYDAIKSNGRKKPSPACRNQVEAEVIVHSDF
                     SASKGCPDLHLQDLEPEEALPAEVLPPTAGVVDLSQGADWLGRELEECQPATTGPERL
                     TCLPEAASASCSCSDLQPSSAVEEAPGKGCQPKALCPLEISPSLPRAPVSSAQVP"
     exon            97..450
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            451..592
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            593..729
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            730..870
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            871..1026
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1440
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1605
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            1606..1743
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            1744..1914
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            1915..2151
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2152..2253
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2254..2437
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2438..2565
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2566..2736
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2737..2874
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2875..2980
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            2981..3209
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            3210..3374
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
     exon            3375..6196
                     /gene="Igdcc4"
                     /gene_synonym="Nope"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcagcttgg catggaagag gcagtgggga caagggactg tggtgtcctc agtggatctg
       61 ttggtgcagc ctgtagagaa gctaagcagg attcagggga gctgccattg ccccaggaga
      121 caactgtcca gctgagctgt gatgagggac ccctgcgagt ggtcctgggc cctgagcagg
      181 ctgtggtgct ggactgcact ttgggggctg ctgccgctgg accgccaacc acggtgacgt
      241 ggagcaagga tggagatgtt gtgctggagc gtgacaacct gcacctgcta cccaatggct
      301 ccctgcggct gtcctcaccc ctagagccag aagacagtga tgatgaggaa gctcttagcg
      361 tctggaaggt cattgagggc agctattcct gtctggccca tggcccactg ggagtagtgg
      421 ccagccaggt tgctgtggtc aagcttgcca cactcgaaga cttctctctg caccccgagt
      481 cccagactgt ggaggagaat gggacagcac gctttgaatg ccacacagag gggctgccag
      541 cccccatcat tacttgggaa aaggatcagg tgaccgtaac tgaggagccc cggctcatca
      601 ctcttcccaa tggcgtcctt cagatcctgg atgtccagga cagcgatgca ggttcctacc
      661 gatgtgtggc caccaattca gcccgccaac gattcagcca ggaggcctta ctcagtgtgg
      721 ccctcagagg gtccttggag gctaccaggg gccaggatgt ggtcatagtg gcagccccag
      781 agaacaccac agtggtgtct ggacagagtg tagtgttgga gtgtgtggcc tccgctgacc
      841 ccaccccttt tgtgtcctgg gtccgacagg atgggaagcc tatttccacg gatgtcatcg
      901 ttctgggccg gaccaatcta ctcatcgcca gcgcgcagcc tcggcactct ggagtctatg
      961 tctgccgggc caacaagccc cgcacccgag acttcgccac tgccgctgct gagctccgag
     1021 tgcttgctgc cccagccatc tcgcaggcgc ccgaggcgct gtcgcggacc agggccagca
     1081 ctgcgcgctt cgtttgccgc gcgtccgggg agccacgacc tacgctgcac tggctgcacg
     1141 acggggcccc gttgcgaccc aacgggcgcg tcaaggtgca gggcggtggc ggcagcttgg
     1201 tcatcactca gatcggcctg caggactctg gttactacca gtgcgtagcg gagaacagcg
     1261 cgggaaccgc ctgtgcggct gcgcccctgg cggtggtagt gcgcgagggg ctgcccagtg
     1321 ccccgactcg ggtcaaggca acgccgctga gcagctccgc tgtgctagtg gcctgggagc
     1381 ggcctgaatt gcacagcgag caaatcattg gcttctctct tcactaccaa aaggcaaggg
     1441 gagtagacaa tgtggagtac cagtttgcag taaacaatga caccacagag ctgcaggttc
     1501 gggacctgga acccaacacg gattacgaat tctacgtggt ggcctactcc cagctagggg
     1561 ccagccggac ctccagccca gccctggtgc atacactgga cgatgtcccc agcgcagcac
     1621 cccagctctc cctgtccagc cccaaccctt cggacatcag ggtggcatgg ctgcccctgc
     1681 cctccagcct gagcaatgga caggtggtga agtacaagat agagtacggt tcagggaagg
     1741 aagatcaggt tttctccact gaggtgccgg gaaatgagac tcaacttacg ttaaactcac
     1801 tccagccaaa caaggtatac cgagtccgga tttcagctgg cactggggct ggctacggag
     1861 tcccttctca gtggatgcag cacaggacac ctggtgcaca caaccaaagc catgtcccct
     1921 ttgcccctgc agaattgaag gtgagggcaa agatggagtc cctggtggtg tcatggcagc
     1981 cgccccctca ccccacccag atctctggat ataaactcta ctggcgagag gtgggaacag
     2041 aggaggaggc agatggtgac cgccccccag ggggccgtgg agatcaggct tgggacgtcg
     2101 ggccggtgcg gctgaagaag aaagtcaagc agtatgagct gacccagtta gtccctggca
     2161 ggctgtacga ggtgaagcta gtagctttca acaaacacga ggacggctac gctgctgtat
     2221 ggaagggcaa gacggagaag gcgcccacac cagatctgcc tatccagagg gggccaccgc
     2281 tgcctccggc ccatgtccac gcggaatcaa acagctccac ctccatttgg cttcggtgga
     2341 agaagccaga ctttaccaca gtcaagattg tcaactacac tgtgcgcttc ggcccctggg
     2401 ggctcaggaa tgcctccctg gtcacctact ataccagctc tggagaagac atcctcattg
     2461 gcgggctgaa accatttacc aagtatgagt ttgcagtaca gtcccatggt gtggatatgg
     2521 atgggccttt tggctctgtc gtagaacgct ccaccctgcc tgaccggccc tcaacacctc
     2581 cttctgacct gcgtctgagc cccctgacac catccactgt tcggttacac tggtgtcccc
     2641 ccacggagcc caacggcgag atcgtggagt atctaattct ctacagcaac aaccacaccc
     2701 agccggagca ccagtggaca ctgctcacca cagagggaaa catcttcagt gcagaggtac
     2761 atggcctaga gagtgacact cggtatttct tcaagatggg agcccggaca gaggtggggc
     2821 ctgggccctt ttctcgattg caagatgtga tcactctaca ggagacattc tcagactcct
     2881 tggatgtgca ctctgtcaca ggcatcatcg tgggcgtctg cctgggcctt ctctgtctcc
     2941 tggcctgcat gtgtgctggc ctgcgacgaa gctcgcacag ggaagccctc cccggactgt
     3001 cctccacggc caccgctggg aacccagcac tctactcaag agctcggctc gggcccccca
     3061 gtgtccccgc tgcccatgag ttggagtccc ttgtgcatcc tcgtccccag gactggtccc
     3121 caccgccctc ggatgtggaa gacaaggcta aagtgcacag ccttatgggt ggcagcgttt
     3181 cagattgccg aggccactcc aagagaaaga tctcctgggc tcaggcaggg ggaccaaatt
     3241 gggcaggctc ctgggcaggc tgtgagctgc cccaggggag tggtccaagg ccggctctaa
     3301 cccgggctct gctgcctcca gccggaactg ggcagacact gctgctgcag gctctggtgt
     3361 atgatgccat aaagagcaac gggagaaaga agccgtcccc agcctgcagg aatcaggtgg
     3421 aggccgaagt cattgtccac tccgatttca gtgcatccaa aggatgtcct gacctccacc
     3481 tccaagacct ggagcccgag gaggccctgc ctgcagaggt tctgcctccc actgctgggg
     3541 tcgtggattt gtcccaagga gcagactggc tgggcaggga gctggaagag tgccaaccag
     3601 caaccactgg gccagagagg ctcacctgct tgccagaagc agccagtgcc tcctgctcct
     3661 gctcagacct ccagcccagc agtgctgtag aggaggcccc tgggaaaggc tgccagccca
     3721 aagccctgtg tcctctagaa atcagcccaa gccttcccag agcccctgtc tcctctgctc
     3781 aggtgccctg agcagaaggc tgatacggct cagggacatg acatgcatgg ccacacggtg
     3841 taccagagat atcaacaagc cctttggagc ctctaggatc ctttggctgg ggtgagggag
     3901 aactttattc tctcccctat attttgcatc acatatgtga tacaggaggg acttgagaca
     3961 cagctgcatg tgatggacag gtgtgtgtgc tggttgagct gggaaacctc tccctatgta
     4021 gcagtcactg gggtctgatt gaccctccat ggcaggacgg tgtaccagtg atcagtgcca
     4081 ggtctttgag ctttagcctt gtcacctagc cttttattac actctgagag tgtctccagt
     4141 gctgtgtcta caaagaggtg ccagcccctc ttcggtcagc tgtgctgagc agagtgccag
     4201 tcaaccgcag gcctacgaca cggcaacagc acggccgtca tccccctggc ctcctaaggt
     4261 ccagacggct gggtgaaccc agctctcctt tgagcagctc tgtacctaat tttgtaatct
     4321 gggaagtgcc tggtttggga aatcttcttt cgccccaccc ccatccccca gtccctcgct
     4381 gccccttcat tgttctggtg gtctgtctca tgtcatcttg ctccctaatc ctggggccct
     4441 tctctttccc atgatgcccc ttatttcctc acggctgttt ccatttctgt ctccaacgct
     4501 tgtctttgtg tcgtgtgttt ctcgtccctg agttcaacct atgcaccctt ccctaacaac
     4561 atgactacct catgtctgct tcagaccata gtgtgaccgc tgggtcccca cagctcccct
     4621 gccaactgcc ttcctgggca gatgatccac tccaggtaga tctggagaag actttgtagc
     4681 ttccctggct gccgtctcct tggtattgag atgaacccag gccacaccag ggaagccctg
     4741 agaaggggta ggcactgata ccaaaaggct taataaaatg actgcccccc atctgcacag
     4801 agaaatgagt gcatgctttg ccatgcagtc ctggccaaag ctgaaggggt gaggagaagg
     4861 tagttaccag agctgcagtg actcagctcc ctgaccttgg agccttgaac ctgactggat
     4921 tcagggtggc aaagagtttc ctccaagatg ctagaaggga agtctctgca caggaaaagg
     4981 gcggctggct cattttgttt tatcttcctt tacactgaat ccagaaatca tcttaccaca
     5041 tagggccaag cctgattggt atttcctgag tcacggaagc cataccatct ccttgatttc
     5101 tcacttcagc cgtgttccag gatcatcgaa tgtgggatct gtgctctctt tctgcacatc
     5161 tttctatttt actggctggc acaccaatca ttaactctgg cttctgggcc aaattagaaa
     5221 taaccagtct atctctctat atcttccttc cttccttcct tccttccttc cttccttcct
     5281 tccttccttc ctttctcttt ctttttttgt ctttcagtgg agttgcagct cctgaaacat
     5341 ctgtgtttat aagcctcatg tgtcattcat gtatgactcc acctacattt cctccccccc
     5401 acttcagcca gcctatgata acactaaaga ttattaatgc tggtttcgta tctcgttaaa
     5461 gacaggattg tcacttgaac tacttctgca gcattcagag tggccacggc caacaccacc
     5521 ggatgtttat tcattgctct gaaggtcaaa agtctcattt tgttttcctg gttagattcc
     5581 ccacccccaa ccccccttgc cttgaatgaa ataaccgttt taacagtagg ctcttagcat
     5641 cacaccacat agtcattcct catgttcttg tttaacaagc actgaggttc tggtttaaat
     5701 taaacagctg caaatgagac aatttataac ccattaggct gggtggaaaa ttgtttctca
     5761 aaagcaaata agtaataaat ctggtatctg cctataactc acagttgata agaaagtagc
     5821 cagtactcac tagcgttata tatgatttgg gttctgagta actggggagt gttagatttg
     5881 tgactttgta gcagcaggtt ttattaggaa agagtctatt ggccttttac agggtattaa
     5941 tccctttgtc gcttaccatg gatgccttaa gttcttttga gtctcattta agaacctctc
     6001 ttttctcgaa gcatgacgag tgcactcgat acttacttgc tcactcattt acctgtccct
     6061 ccttcgtgct ggtttatttc ctcacacttt ccagcatcat gcttcctcct tacaaatatg
     6121 atattcttta gtgttacact aaggcattga tcatgtatct gtccccgtaa tgaattaata
     6181 aactattttc cagaca
//
