LOCUS       NM_001372159            4336 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus immunoglobulin superfamily, DCC subclass, member
            3 (Igdcc3), transcript variant 1, mRNA.
ACCESSION   NM_001372159 XM_003750528 XM_003754419
VERSION     NM_001372159.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4336)
  AUTHORS   Yang,W., Li,C. and Mansour,S.L.
  TITLE     Impaired motor coordination in mice that lack punc
  JOURNAL   Mol Cell Biol 21 (17), 6031-6043 (2001)
   PUBMED   11486040
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001372159.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This variant is based on
            transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1514523.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-263               JAXUCZ010000008.1  74556348-74556610
            264-569             JAXUCZ010000008.1  74559476-74559781
            570-714             JAXUCZ010000008.1  74593651-74593795
            715-845             JAXUCZ010000008.1  74594145-74594275
            846-983             JAXUCZ010000008.1  74594640-74594777
            984-1142            JAXUCZ010000008.1  74596273-74596431
            1143-1308           JAXUCZ010000008.1  74597361-74597526
            1309-1556           JAXUCZ010000008.1  74598003-74598250
            1557-1721           JAXUCZ010000008.1  74598437-74598601
            1722-1913           JAXUCZ010000008.1  74598882-74599073
            1914-2018           JAXUCZ010000008.1  74599206-74599310
            2019-2157           JAXUCZ010000008.1  74599972-74600110
            2158-2365           JAXUCZ010000008.1  74600228-74600435
            2366-4336           JAXUCZ010000008.1  74601166-74603136
FEATURES             Location/Qualifiers
     source          1..4336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..4336
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /note="immunoglobulin superfamily, DCC subclass, member 3"
                     /db_xref="GeneID:315759"
                     /db_xref="RGD:1307338"
     exon            1..263
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..2569
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; putative neuronal cell adhesion molecule"
                     /codon_start=1
                     /product="immunoglobulin superfamily DCC subclass member 3
                     isoform 1 precursor"
                     /protein_id="NP_001359088.1"
                     /db_xref="GeneID:315759"
                     /db_xref="RGD:1307338"
                     /translation="MAEPRTASPRRPPALRRPRLLPPLLPPLLPPLLLLLLPLPVPSL
                     GLGHSAELAFSVEPNDDIANLGQPIMLGCKVEGSPPVQVSWRKNGAELPEDTHTTLLA
                     NGSLLIHHLRLEQGESPSDEGDYECVAQNRFGLLVSRKARIQVATMSDFHVHPQAVMG
                     EEGGVARFQCQIHGLPKPLITWEKNRVPIDTDDERYTLLPKGVLQITGLRAEDSGVFH
                     CVASNMASVRVSHGARLTVSGSGSGTYKEPTILVGPENLTLTVHQTAVLECVATGNPR
                     PIVSWSRLDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRL
                     VVQAPAEFVQHPQSISRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGAGGHVRLKNNN
                     STLSISGVGPEDEAIYQCVAENIAGSSQASARLTVLWAEGLPGPPRNVRAVSVSSTEV
                     RVSWSEPLTHTKEIIGYVLHIRKAADSPKLEYQEAVSKSTFQHLVRDLEPSTAYSFYI
                     KAYTPRGASLASVPTLASTLGEAPVPPPLSVRLLGSSSLQLLWKPWPRLAQHNGGFKL
                     FYRPASAASFTGPILLPGTVSSYNLSQLDPSTVYEVKLLAYNQNGDGNATVRFVSLKG
                     ASERTALTPPCDCRKEEVTNHTSTTGIVIGIHIGVTCIIFCVLFLLFGQRGRVLLCKD
                     VENQLSPPQGPRSQRDPGILTLNGVNRGEGGQLGRDEKHVDAKELEQLFPTTASAGQP
                     GSRSTDPTAPTPYEETQLSMVQLQDFNLAAGRTTETMSSCAGPGPVPASQDVGLGLLS
                     DRQTAQPLAVPAPQ"
     exon            264..569
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            570..714
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            715..845
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            846..983
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1142
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1308
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1556
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1721
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1913
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            1914..2018
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            2019..2157
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            2158..2365
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
     exon            2366..4336
                     /gene="Igdcc3"
                     /gene_synonym="Punc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcggccccg gccagagccc cggccccggc cccggggccg gccccgcggg accctgtgag
       61 cccgtgagac tcccccgacc cccgcccgag cagcgccgcg cgtagccgag cccagcggac
      121 cgagagaccg atggctgagc cgcgcaccgc gtccccgcgc cgcccgcccg cgctgcgccg
      181 gccccggctt ctgccgcctt tgctgccgcc gctgctgccg ccgctgctgc tgctactgtt
      241 gccgctacct gtgccaagcc tgggtctggg ccattctgct gagctggcat tttccgtgga
      301 gccaaatgat gatattgcaa accttggaca gcccatcatg ctgggctgca aagtagaggg
      361 cagccctcca gtgcaagtct cctggaggaa gaatggagcg gagctgcctg aggacaccca
      421 caccacccta ctggccaatg gctccttgct gatccaccac ctcaggctgg agcagggaga
      481 gagcccgtca gatgagggcg actatgaatg tgtggctcag aaccgctttg ggctgctggt
      541 cagtcggaag gctcgtatcc aggttgcaac tatgtccgac ttccacgtgc acccccaggc
      601 ggtcatgggt gaggagggtg gtgtggcccg cttccagtgc caaatccacg ggcttcccaa
      661 gcctctgatc acatgggaga agaacagagt ccccattgac acggatgatg agaggtacac
      721 attactgccc aagggggtcc tgcaaataac aggacttcgg gctgaggata gcggtgtctt
      781 ccattgtgtg gcctccaaca tggctagtgt gcgggtcagc cacggggcca ggctcaccgt
      841 gtcaggttcg ggctctggga cctacaagga gcccaccatc cttgtggggc ctgagaacct
      901 caccctgaca gtgcaccaga ctgcagtgct ggagtgtgtc gccacgggca acccgcgccc
      961 cattgtgtcc tggagccgcc tggatggccg ccctattggg gtggaaggca tccaggtgct
     1021 gggcacgggg aacctcatca tctcagatgt gactgtccag cattcaggtg tctatgtctg
     1081 tgcagccaac aggcctggca cccgcgtgag gaggacagcc cagggtcggc tggtggtaca
     1141 agccccagca gagtttgtcc agcatcctca gtccatctcc aggccagctg ggaccacagc
     1201 catgttcacc tgccaagccc agggtgaacc accgcctcat gtcacgtggt tgaagaatgg
     1261 acaagtgctg ggggcaggag gccacgtcag gctcaagaac aataacagca cattgagcat
     1321 ttctggagtc ggtcctgaag acgaagccat ctaccagtgt gtggctgaga acattgctgg
     1381 ctcctcacaa gccagcgcca ggctgaccgt gctgtgggcc gaggggttgc caggcccccc
     1441 acgcaatgtc cgtgctgtct ctgtgtcctc cactgaggtt cgagtgtcct ggagtgagcc
     1501 tctgacccac accaaggaga tcattggcta tgtcttgcac atcaggaagg ctgctgactc
     1561 acccaagctg gagtaccagg aagctgtcag caagagcacc tttcagcacc tggtgagaga
     1621 ccttgagccc tccacagcct acagcttcta catcaaagcc tacacaccac ggggggccag
     1681 tttagcctcc gtccccaccc tggccagcac cctgggtgaa gcccctgtcc cacccccgtt
     1741 atctgtgcgg ttgctgggca gctcctctct acaactgctg tggaagccct ggccacggct
     1801 ggcccaacac aatgggggct tcaagctgtt ttaccgccca gccagcgcag cctccttcac
     1861 cggccccatc ttgctccctg ggactgtctc ctcttacaac ctcagccagc tcgaccccag
     1921 caccgtgtac gaggtgaagc tcctcgccta caatcagaat ggagacggga acgccacggt
     1981 ccgatttgtg tctttgaagg gagcctctga gaggacagcg ttgactcccc catgtgactg
     2041 ccggaaggaa gaggtcacca accacacatc tactacaggc attgtcattg gcatccacat
     2101 cggagtcact tgcatcatct tctgtgtcct ctttcttctg tttggccaaa ggggcagggt
     2161 cctcctatgt aaggatgtgg aaaaccagct ctcccctccc cagggtcccc ggagccagag
     2221 ggaccctggt atcctgaccc tgaatggagt gaaccgagga gaagggggcc agctaggccg
     2281 agatgaaaag catgtggatg ccaaggagtt ggagcagctg ttccccacaa ctgcgtcagc
     2341 cgggcagcca ggctccaggt ccacggaccc cacagcccct actccatatg aggagaccca
     2401 gctctccatg gtgcagcttc aagacttcaa ccttgcggca gggaggacaa cagagactat
     2461 gtcttcctgt gcagggcctg gacctgtccc agcatcccag gatgtaggcc ttggtctcct
     2521 cagtgacaga cagacggccc agcctctagc agtcccagct ccccagtgag cttactggag
     2581 acaatagcca gcgctggtgt gttcccgagg ggtggtaccc cattctcagg tcaaaggcga
     2641 ggtttttcct cttctgtggg atttggatgt cctaggagct cgccaatgaa ggactgggtt
     2701 ctcaaaccac aggacccagt gggtcctaca gcaaggcatc tccctcctcg aactaatgtc
     2761 gccccctcac caacgcctgc tgcccacagg actcaggaaa caaacctttt cctttaaaaa
     2821 aaaaatcaaa atttaaaagt caaaaaagaa agagaaagga gagagagaga gagagagaga
     2881 gagagagaga gagagagaga gagaaagaga gagagagagg gaggaagtga attatactcc
     2941 agagccatgt ccctgctgtg gctcggcccc tgatgtgtca ccctgctctg accttgtttt
     3001 ctcaggatgg atttttagct gttgtgactc agcacctacc tcagccggaa tgaatgtcct
     3061 tgggggtagc ggggcagtag cctcagcctc taccccacag agcccgaaag cactcctacc
     3121 tcaagccccg taatggggac ccctcccacc tatattgttg cccagagtaa aagaaaaagg
     3181 agaaaaaaaa agaaaaaaag aaagggaaaa aaaaaaacct aacccccaaa agaaccactg
     3241 tcccaactcc aagtgtgaaa gaaactgtct acctcaaggc tcacggccct cagtgtgggc
     3301 ctatgctgtc actggaccct ccttggcctc ctccttccct ggcctggcct ggcctacctc
     3361 tcccccgcca gaggaggctg tagctaggtg accatggggc ttaccgaaat ggagatgaaa
     3421 ctggtcagag agaaaatgtg aaacaagcca aaaacaagag caaagctgtt ccatgaagta
     3481 taaattgtcc caaacttgtc ccatccctgc acaccacctg cactccatct cctgtgtctg
     3541 tccgtccacc cttgttccga ccttctaaca acccactgtt cacctggagc cctgtagtcc
     3601 tccctgcctg ggcttaggga aggcgggaca taacccggag atccatctct cggtctgacc
     3661 agacacaggg cagtccctgg aatgtactgc atggtgtgga agtgggtgtt ctctcatata
     3721 ggcgccccag ctttctggga cccaggtaac ctgacctacc cagtcagcag gggtggccag
     3781 gaattatttt tgtatgaggt gtgtttacgt tttatttctc ttttctgttg tattgttctt
     3841 tgaactactt aggttaaaaa agttagaaac agaaagaaag gaaaaaaaac acaaagacct
     3901 atttttggtt atactcagaa acattttttt aaatagcaga aagaaaactt tttttaaaga
     3961 aaaaaaaaag gttgtgtatt ctttaaaaaa atgaggttag aacataaaga ccctgacccc
     4021 aaatcctcta gggactccca ccccaaactc tagagaatta gctaaaacag tagaatgtgt
     4081 ggcgttttgt tagaaaccta gactcttgtc caagtggact tgggaagggc agtcccttct
     4141 cccaaatggt aggtggactc tagggctctt cccacctgag ccagtgtcat ctgtccctga
     4201 gttgcttctc tgtggcgtcc cattttcctt tggtcagaga ggctacggga gacggatctg
     4261 gcagcctctt cggcccaatt gggtttgtca cagtctattc attttaactg aataaaagta
     4321 ctgttgccaa agtgaa
//
