LOCUS       NM_001106491            1081 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus intraflagellar transport associated protein
            (Iftap), mRNA.
ACCESSION   NM_001106491 XM_001071109 XM_001071147 XM_215788
VERSION     NM_001106491.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Takahara,M., Kunii,M., Nakamura,K., Harada,A., Hirano,T., Katoh,Y.
            and Nakayama,K.
  TITLE     C11ORF74 interacts with the IFT-A complex and participates in
            ciliary BBSome localization
  JOURNAL   J Biochem 165 (3), 257-267 (2019)
   PUBMED   30476139
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Majkowski,M., Laszkiewicz,A., Sniezewski,L., Grzmil,P.,
            Pawlicka,B., Tomczyk,I., Michniewicz,M., Kapusniak,V., Janik,S.,
            Chodaczek,G. and Cebrat,M.
  TITLE     Lack of NWC protein (c11orf74 homolog) in murine spermatogenesis
            results in reduced sperm competitiveness and impaired ability to
            fertilize egg cells in vitro
  JOURNAL   PLoS One 13 (12), e0208649 (2018)
   PUBMED   30521625
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1081)
  AUTHORS   Kasztura,M., Sniezewski,L., Laszkiewicz,A., Majkowski,M., Kobak,K.,
            Peczek,K., Janik,S., Kapusniak,V., Miazek,A., Cebrat,M. and
            Kisielow,P.
  TITLE     Search for the Function of NWC, Third Gene Within RAG Locus:
            Generation and Characterization of NWC-Deficient Mice
  JOURNAL   Arch Immunol Ther Exp (Warsz) 64 (4), 311-319 (2016)
   PUBMED   26703212
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166899.1.
            
            [WARNING] On Apr 11, 2024 this sequence was replaced by
            NM_001106491.3.
            
            On May 25, 2008 this sequence version replaced NM_001106491.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166899.1, FQ214875.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q31"
     gene            1..1081
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /note="intraflagellar transport associated protein"
                     /db_xref="GeneID:295952"
                     /db_xref="RGD:1309730"
     exon            1..93
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     exon            94..218
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     exon            219..373
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     CDS             238..975
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /note="uncharacterized protein C11orf74 homolog"
                     /codon_start=1
                     /product="intraflagellar transport-associated protein"
                     /protein_id="NP_001099961.2"
                     /db_xref="GeneID:295952"
                     /db_xref="RGD:1309730"
                     /translation="MPAQIPRRPEIMSEDQLMKEVLDKFVNCHEQTYEEFLSTFTHLS
                     KEDNVAKGGAHGMNLSENTLTAEKWNHKIESNGHHFRNRTIFLHDSSECSEEDQIVID
                     EGQKVGSSFQGDMTRAGKVKVDNFLDLEDVDTEEESKPQMNKDWMVLPGEVEQSISIS
                     APAYVPSVDLPLTSEGKPTPAVGRTQTQTEEILGDEVQPFFLDEDFDYDNVTLTPKFT
                     AGEIATIQELAKQKRVDTSTHVCELHD"
     exon            374..531
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     exon            532..603
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     exon            604..670
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     exon            671..810
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
     exon            811..1052
                     /gene="Iftap"
                     /gene_synonym="RGD1309730"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagaaacat tgcaggctgt ttgactgtaa ggactccaaa agtgcgaagt gactagatgg
       61 gcgccatggt cacggacagc tagggaacgg gagacagaca gtaccgtctg aaatattcag
      121 tctcacccgt cagcactgct tatgtttcct gactccagaa cagcaagtgc cccatggact
      181 gcagctacgt agtgtgggag ttaacactgg tttgcacgag tggccttgtc aattggaatg
      241 cctgctcaaa taccgaggag accagagata atgagtgaag atcagttaat gaaagaagtc
      301 ttggataagt ttgtcaactg tcatgagcaa acctatgaag aatttctgag cacttttact
      361 catctttcaa aagaggataa tgtagccaaa gggggagcac atggaatgaa tttatcagaa
      421 aatacactta ctgctgagaa atggaatcac aaaattgaat cgaatggtca tcattttaga
      481 aatagaacca tctttcttca cgattcctcc gaatgctcag aagaggacca gatagtgatc
      541 gatgaaggcc agaaagttgg cagttccttt caaggtgata tgacccgggc aggaaaggtg
      601 aaggtagaca acttcctaga cttagaagat gtggacacgg aggaagagag taagccccag
      661 atgaacaagg attggatggt acttccaggt gaggtggaac agagtataag catcagtgct
      721 cctgcttatg ttccttctgt ggacctgcca ctcacctctg aggggaagcc aacgcccgct
      781 gtgggaagaa ctcagacgca aactgaagag atacttggag atgaagttca gccattcttt
      841 cttgatgaag actttgatta tgacaatgtg actctcactc cgaagtttac tgctggagag
      901 atagcaacca tccaagagct ggccaagcaa aagagagtgg ataccagtac ccacgtgtgc
      961 gaactgcatg actgagtcac cagatgtctc tgtgtctact tttattttgt tcatagtcaa
     1021 acaacgttag aataaagcat atcccaactg ataaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1081 a
//
