LOCUS       XM_006240370             948 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus intraflagellar transport 43 (Ift43),
            transcript variant X2, mRNA.
ACCESSION   XM_006240370
VERSION     XM_006240370.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006240370.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006240370.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..948
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /note="intraflagellar transport 43; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 15 ESTs, 7 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     55 samples with support for all annotated introns"
                     /db_xref="GeneID:299209"
                     /db_xref="RGD:1307392"
     CDS             78..785
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /codon_start=1
                     /product="intraflagellar transport protein 43 homolog
                     isoform X2"
                     /protein_id="XP_006240432.1"
                     /db_xref="GeneID:299209"
                     /db_xref="RGD:1307392"
                     /translation="MDDLLDLGEEKRRSSATSGAKMGRRAQQESTQAENYLNSKNSSL
                     TQTGETPPPKPPRRQGGWADESMKVAKHGLSSPGKLWNAVDDMDGRRSPAQFLTGLGK
                     KVSEEMEDRRLRQQNLTGTEEGEDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYR
                     DLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEW
                     DLLRAEKEDPVGPSRHI"
ORIGIN      
        1 ggatggaagg gcggggtcgt tgttagggac gcggcggaga cggctgtttc caggaagtga
       61 catcagcggc cgcggtgatg gacgatttac tggatctggg agaggagaaa cgtcgcagct
      121 cggccacctc cggggccaag atgggacgcc gagctcaaca ggagtcgact caggctgaga
      181 attatctcaa cagcaagaat tcttcattga ctcagaccgg agagactccc ccaccaaaac
      241 cacctcggag gcagggcggc tgggcagatg agtccatgaa ggtggcaaaa catggtcttt
      301 ccagcccagg aaagctgtgg aatgctgtgg atgacatgga cggtcggagg agtccagccc
      361 agttcctcac aggattggga aagaaagttt ctgaagaaat ggaagatcgc cgcctcagac
      421 agcagaacct gacggggaca gaggaaggag aagatatccc tgtgatccca gatctggaag
      481 atgtgcagga ggaagacttt gtgctgcagg tggcgtcccc gcccagcatc caggtaaacc
      541 gagtgatgac ctaccgtgac ctggacaatg atcttatgaa atactcagcc tttcagactt
      601 tggatgggga gattgacctg aagctcctca ccaaagtgct ggccccagag catgaagtgc
      661 gagaggatga tgtgggctgg gactgggacc atctatacac tgaggtgtcc tcagagctcc
      721 tcacagagtg ggacctgctg cgggcagaga aggaggaccc cgttggacca tcgaggcaca
      781 tctgacccag gaacgccact gtgcatttgg acaaatgcat gaagtctaaa accatgggag
      841 cttgtgagca gcttacaatt tttatacaga atattttgta atagaatatt tattttcagt
      901 aggacacatt ggagcattcc aattcaataa atgactttat tctgtgaa
//
