LOCUS       NM_001399448             818 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus intraflagellar transport 43 (Ift43), transcript
            variant 1, mRNA.
ACCESSION   NM_001399448 XM_006240372
VERSION     NM_001399448.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Hirano,T., Katoh,Y. and Nakayama,K.
  TITLE     Intraflagellar transport-A complex mediates ciliary entry and
            retrograde trafficking of ciliary G protein-coupled receptors
  JOURNAL   Mol Biol Cell 28 (3), 429-439 (2017)
   PUBMED   27932497
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Broekhuis,J.R., Verhey,K.J. and Jansen,G.
  TITLE     Regulation of cilium length and intraflagellar transport by the
            RCK-kinases ICK and MOK in renal epithelial cells
  JOURNAL   PLoS One 9 (9), e108470 (2014)
   PUBMED   25243405
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 818)
  AUTHORS   Arts,H.H., Bongers,E.M., Mans,D.A., van Beersum,S.E., Oud,M.M.,
            Bolat,E., Spruijt,L., Cornelissen,E.A., Schuurs-Hoeijmakers,J.H.,
            de Leeuw,N., Cormier-Daire,V., Brunner,H.G., Knoers,N.V. and
            Roepman,R.
  TITLE     C14ORF179 encoding IFT43 is mutated in Sensenbrenner syndrome
  JOURNAL   J Med Genet 48 (6), 390-395 (2011)
   PUBMED   21378380
REFERENCE   4  (bases 1 to 818)
  AUTHORS   Mukhopadhyay,S., Wen,X., Chih,B., Nelson,C.D., Lane,W.S.,
            Scales,S.J. and Jackson,P.K.
  TITLE     TULP3 bridges the IFT-A complex and membrane phosphoinositides to
            promote trafficking of G protein-coupled receptors into primary
            cilia
  JOURNAL   Genes Dev 24 (19), 2180-2193 (2010)
   PUBMED   20889716
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 7, 2022 this sequence version replaced XM_006240372.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.26149.1,
                                           SRR26360194.1381441.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000006.1  111460751-111460835
            86-178              JAXUCZ010000006.1  111463134-111463226
            179-243             JAXUCZ010000006.1  111488888-111488952
            244-276             JAXUCZ010000006.1  111514988-111515020
            277-323             JAXUCZ010000006.1  111516274-111516320
            324-396             JAXUCZ010000006.1  111535940-111536012
            397-472             JAXUCZ010000006.1  111536235-111536310
            473-535             JAXUCZ010000006.1  111536755-111536817
            536-818             JAXUCZ010000006.1  111536942-111537224
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..818
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /note="intraflagellar transport 43"
                     /db_xref="GeneID:299209"
                     /db_xref="RGD:1307392"
     exon            1..85
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..655
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /note="isoform 1 is encoded by transcript variant 1;
                     intraflagellar transport protein 43 homolog"
                     /codon_start=1
                     /product="intraflagellar transport protein 43 homolog
                     isoform 1"
                     /protein_id="NP_001386377.1"
                     /db_xref="GeneID:299209"
                     /db_xref="RGD:1307392"
                     /translation="MDDLLDLGEEKRRSSATSGAKMGRRAQQESTQAENYLNSKNSSL
                     TQTGETPPPKPPRRQGGWADESMKVAKLGKKVSEEMEDRRLRQQNLTGTEEGEDIPVI
                     PDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVL
                     APEHEVREDDVGWDWDHLYTEVSSELLTEWDLLRAEKEDPVGPSRHI"
     exon            86..178
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            179..243
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            244..276
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            277..323
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            324..396
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            397..472
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            473..535
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
     exon            536..818
                     /gene="Ift43"
                     /gene_synonym="RGD1307392"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttccaggaa gtgacatcag cggccgcggt gatggacgat ttactggatc tgggagagga
       61 gaaacgtcgc agctcggcca cctccggggc caagatggga cgccgagctc aacaggagtc
      121 gactcaggct gagaattatc tcaacagcaa gaattcttca ttgactcaga ccggagagac
      181 tcccccacca aaaccacctc ggaggcaggg cggctgggca gatgagtcca tgaaggtggc
      241 aaaattggga aagaaagttt ctgaagaaat ggaagatcgc cgcctcagac agcagaacct
      301 gacggggaca gaggaaggag aagatatccc tgtgatccca gatctggaag atgtgcagga
      361 ggaagacttt gtgctgcagg tggcgtcccc gcccagcatc caggtaaacc gagtgatgac
      421 ctaccgtgac ctggacaatg atcttatgaa atactcagcc tttcagactt tggatgggga
      481 gattgacctg aagctcctca ccaaagtgct ggccccagag catgaagtgc gagaggatga
      541 tgtgggctgg gactgggacc atctatacac tgaggtgtcc tcagagctcc tcacagagtg
      601 ggacctgctg cgggcagaga aggaggaccc cgttggacca tcgaggcaca tctgacccag
      661 gaacgccact gtgcatttgg acaaatgcat gaagtctaaa accatgggag cttgtgagca
      721 gcttacaatt tttatacaga atattttgta atagaatatt tattttcagt aggacacatt
      781 ggagcattcc aattcaataa atgactttat tctgtgaa
//
