LOCUS       NM_001130495            1021 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus intraflagellar transport 27 (Ift27), mRNA.
ACCESSION   NM_001130495 XM_001075907 XM_216964
VERSION     NM_001130495.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Desai PB, San Agustin JT, Stuck MW, Jonassen JA, Bates CM and
            Pazour GJ.
  TITLE     Ift25 is not a cystic kidney disease gene but is required for early
            steps of kidney development
  JOURNAL   Mech Dev 151, 10-17 (2018)
   PUBMED   29626631
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Zhang Y, Liu H, Li W, Zhang Z, Shang X, Zhang D, Li Y, Zhang S, Liu
            J, Hess RA, Pazour GJ and Zhang Z.
  TITLE     Intraflagellar transporter protein (IFT27), an IFT25 binding
            partner, is essential for male fertility and spermiogenesis in mice
  JOURNAL   Dev Biol 432 (1), 125-139 (2017)
   PUBMED   28964737
REFERENCE   3  (bases 1 to 1021)
  AUTHORS   May-Simera HL, Petralia RS, Montcouquiol M, Wang YX, Szarama KB,
            Liu Y, Lin W, Deans MR, Pazour GJ and Kelley MW.
  TITLE     Ciliary proteins Bbs8 and Ift20 promote planar cell polarity in the
            cochlea
  JOURNAL   Development 142 (3), 555-566 (2015)
   PUBMED   25605782
REFERENCE   4  (bases 1 to 1021)
  AUTHORS   Eguether T, San Agustin JT, Keady BT, Jonassen JA, Liang Y, Francis
            R, Tobita K, Johnson CA, Abdelhamed ZA, Lo CW and Pazour GJ.
  TITLE     IFT27 links the BBSome to IFT for maintenance of the ciliary
            signaling compartment
  JOURNAL   Dev Cell 31 (3), 279-290 (2014)
   PUBMED   25446516
REFERENCE   5  (bases 1 to 1021)
  AUTHORS   Liew GM, Ye F, Nager AR, Murphy JP, Lee JS, Aguiar M, Breslow DK,
            Gygi SP and Nachury MV.
  TITLE     The intraflagellar transport protein IFT27 promotes BBSome exit
            from cilia through the GTPase ARL6/BBS3
  JOURNAL   Dev Cell 31 (3), 265-278 (2014)
   PUBMED   25443296
REFERENCE   6  (bases 1 to 1021)
  AUTHORS   Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa
            H, Wemmer KA, Stainier DY, Qin H, Kamiya R and Marshall WF.
  TITLE     TTC26/DYF13 is an intraflagellar transport protein required for
            transport of motility-related proteins into flagella
  JOURNAL   Elife 3, e01566 (2014)
   PUBMED   24596149
  REMARK    Erratum:[Elife. 2014 Apr 01;3:e02897. PMID: 24692455]
            Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1021)
  AUTHORS   Howard PW, Jue SF and Maurer RA.
  TITLE     Interaction of mouse TTC30/DYF-1 with multiple intraflagellar
            transport complex B proteins and KIF17
  JOURNAL   Exp Cell Res 319 (14), 2275-2281 (2013)
   PUBMED   23810713
REFERENCE   8  (bases 1 to 1021)
  AUTHORS   Lo JC, Jamsai D, O'Connor AE, Borg C, Clark BJ, Whisstock JC, Field
            MC, Adams V, Ishikawa T, Aitken RJ, Whittle B, Goodnow CC, Ormandy
            CJ and O'Bryan MK.
  TITLE     RAB-like 2 has an essential role in male fertility, sperm
            intra-flagellar transport, and tail assembly
  JOURNAL   PLoS Genet 8 (10), e1002969 (2012)
   PUBMED   23055941
REFERENCE   9  (bases 1 to 1021)
  AUTHORS   Follit JA, Xu F, Keady BT and Pazour GJ.
  TITLE     Characterization of mouse IFT complex B
  JOURNAL   Cell Motil Cytoskeleton 66 (8), 457-468 (2009)
   PUBMED   19253336
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 27, 2008 this sequence version replaced
            XM_216964.4, XM_001075907.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213751.1, DV729160.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1021
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /note="intraflagellar transport 27"
                     /db_xref="GeneID:300062"
                     /db_xref="RGD:1308703"
     exon            1..336
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
     CDS             303..863
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /EC_number="3.6.5.2"
                     /note="RAB, member of RAS oncogene family-like 4"
                     /codon_start=1
                     /product="intraflagellar transport protein 27 homolog"
                     /protein_id="NP_001123967.1"
                     /db_xref="GeneID:300062"
                     /db_xref="RGD:1308703"
                     /translation="MVKLAAKCILAGDPAVGKTALVQMFRSDGTHFQKNYTLTTGVDL
                     VVKTVPVLDTNDSVELFIFDSAGKELFSEMLDKLWENPNVLCLVYDVTNEQSFISCTK
                     WLEKVRSQTPGISLPGVLVGTKTDLAGRQTVDSAQAQAWALSQGLEFFETSVKEMDNY
                     EAPFHCLAKQFYQLYREKVDIFHTLV"
     exon            337..416
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
     exon            417..476
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
     exon            477..536
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
     exon            537..654
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
     exon            655..764
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
     exon            765..1021
                     /gene="Ift27"
                     /gene_synonym="Rabl4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaggcgggt tgatgatagt tgccaggagc ctgtttggcg cgactcctgg gaccagtgga
       61 ctagtggttg tgtcccaact cttctgccgg gtccaaggct gggcttggga cgggttctgc
      121 tccgccccat cggcaccttt gcaggctgcc tggggcctga ggccctctgt ccacccaacc
      181 ctagcacccg ggccaccatc catcccttca tcacggcctc aggctctggg gtcagctgcc
      241 ccgaatccta accccctttc agcccccacc cctccacacg tctctgctag tacctggtta
      301 ctatggtgaa gctagcggcc aaatgcatcc tggcaggaga cccagctgta ggcaagacag
      361 ccctggtgca gatgttccgc agcgacggga cccatttcca gaagaactac actctgacaa
      421 ccggagtgga tttggtggtg aagacagtgc cagttcttga cacaaatgac agtgtggaac
      481 ttttcatctt cgactcagcc ggcaaggagc tgttctctga aatgctggat aaactgtggg
      541 agaatcccaa cgtgctgtgt ctcgtctacg atgtgaccaa tgagcagtcc ttcatcagct
      601 gcaccaagtg gctggagaaa gtccggtctc agactcccgg tatctccctc ccaggtgttt
      661 tagtgggaac gaagacagac ctggctggcc gacaaacagt ggattctgcc caggcccagg
      721 cgtgggccct gagtcaaggc ctggaattct ttgagacatc tgtgaaggag atggacaact
      781 acgaggcccc attccactgt ctggccaagc agttctacca gctgtatcgg gagaaggtgg
      841 acatattcca taccctggtg tgagggtcca atggactgtc ccacaggact ggccacgctg
      901 ggctgggcta atgctgttag cccagcagac cttcatcttt ccaggacaca gaagatggga
      961 tcacctggta cttctcaaaa atcaccacag ctttaataaa atgagaaaga agagcaggaa
     1021 c
//
