LOCUS       XM_006246935             931 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus intraflagellar transport 20 (Ift20),
            transcript variant X1, mRNA.
ACCESSION   XM_006246935
VERSION     XM_006246935.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246935.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246935.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..931
                     /gene="Ift20"
                     /gene_synonym="RGD1309400"
                     /note="intraflagellar transport 20; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 22
                     ESTs, 18 long SRA reads, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 233 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:287541"
                     /db_xref="RGD:1309400"
     CDS             220..618
                     /gene="Ift20"
                     /gene_synonym="RGD1309400"
                     /codon_start=1
                     /product="intraflagellar transport protein 20 homolog
                     isoform X1"
                     /protein_id="XP_006246997.1"
                     /db_xref="GeneID:287541"
                     /db_xref="RGD:1309400"
                     /translation="MAKDILGEAGLHFDELNKLRVLDPEVTQQTTELKEECKDFVDKI
                     GQFQKIVGGLIELVDQLAKEAENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKM
                     QLERYRVEYEALCKVEAEQNEFIDQFIFQK"
ORIGIN      
        1 caaaggcttc tggacctagt ggggagttat ttctctcgtg ttgcctctat ttcccagcaa
       61 acacctcggg gagggcggat agtagtgctt ctggtcttgg gagtgacgtg tggtttatag
      121 gtccagtatc cgtggcagcc gccgattgca gttactgaag agaagcttct accgacagtc
      181 gtctgggccg cagcgcgctg tcgagacggc tcggcagcta tggccaagga catcttgggt
      241 gaggcagggc tgcacttcga tgagctgaac aagcttcggg tgttggaccc agaggttacc
      301 cagcagacca cagagctcaa ggaagagtgc aaggactttg tggacaaaat tggccagttt
      361 cagaaaatcg ttggtggtct gattgagctt gttgatcagc ttgccaaaga agcagagaac
      421 gagaaaatga aggccattgg tgctcgaaac ttgctgaaat ccatagcgaa gcagagagaa
      481 gcccagcaac agcaactgca ggcactgata gcagaaaaga agatgcagct agaaaggtat
      541 cgggttgaat atgaagcttt gtgtaaagta gaagcagaac aaaatgaatt tattgaccaa
      601 tttatttttc agaaatgaac tgaaaatttc agttttatag caggaaggca aaaaaaaaaa
      661 aaaaaaaaaa aaaagaaaag aaaaaaaaga aagaaaaaaa gcacctcaac caaaaaacaa
      721 agaccaaacc tctaccattc cagtgatttg atgtatgtca cggcagtgct ccaggggcag
      781 ctggtaaact gtgcagccac tgctagtggc caagcagcac agggccttac tcttctcagc
      841 acaaactaag tgtctgtaaa tgctgatcca cttttttggg agaggtagtt aaattcacaa
      901 ggaaaagcaa taaataccaa ataaatactt t
//
