LOCUS       XM_039111608            5412 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus intraflagellar transport 172 (Ift172),
            transcript variant X2, mRNA.
ACCESSION   XM_039111608
VERSION     XM_039111608.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5412
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5412
                     /gene="Ift172"
                     /gene_synonym="Slb"
                     /note="intraflagellar transport 172; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 40 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:116475"
                     /db_xref="RGD:620744"
     CDS             170..5356
                     /gene="Ift172"
                     /gene_synonym="Slb"
                     /codon_start=1
                     /product="intraflagellar transport protein 172 homolog
                     isoform X2"
                     /protein_id="XP_038967536.1"
                     /db_xref="GeneID:116475"
                     /db_xref="RGD:620744"
                     /translation="MAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRK
                     SYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE
                     YIIVFGLAEGKVRLANTKTNKSSTIYGTDSYVVALTTNCSGKGILSGHADGTIVRYFF
                     DDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDPQ
                     EREFTTAAASPGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRD
                     GSRLCAGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGY
                     EVEEVKILGKERYLVAHTSDTLLLGDLNTNRLSEIPWQGSGGNEKYFFENENVCMIFN
                     AGELTLVEYGSNDSLGSVRTEFMNPHLISVRINERCQRGMEDNKKLAYLVDIKTIAIV
                     DLIGGYNIGTISHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYV
                     QWVPGSDVLVAQNRNSLCVWYNIEAPERVTMSSIRGDVVGLERGGGKTEVMVTEGVTT
                     VAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMWKTLSKLALEARQLHTAE
                     RCFSALGHVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFL
                     EQNAVEEAMDMYQELHRWDECIAVAEAKGHPALEKLRRDYYQWLMDTQQEERAGELQE
                     SQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELVEHITTALIKGELYERAGDLF
                     EKIRNPQRALECYCKGNAFMKAVELARLAFPVEVVRLEEAWGDHLVQQKQLDAAINHY
                     IEARCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPRVAQHYASLQEYEIAEELY
                     TKGDRTKDAIDMYTQAGRWEQAHKLAMKCMRPEDVSVLYITQAQEMEKQGKYREAERL
                     YVTVEEPDLAITMFKKHKLYDDMIRLVGKHHPDLLSDTHLHLGKELETEGRLQEAEYH
                     YLEAQEWKATVNMYRSSGLWEEAYRVAKAHGGANAHKHVAYLWAKSLGGEAAVRLLNK
                     LGLLEAAIDHAADNCSFEFAFELSRLALKHKTPEIHLRYAMYLEDEGKFEEAEAEFIR
                     AGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLR
                     AQRPGLALNYYKEAGLWSDALRICKDYVPGQLEALQEEYEREATKKGGRGVEGLVEQA
                     RQWEQAGEYSRAVDCYLKVRDSGSSGLMEKCWMKAAELSIKFLPPQRSLEVVRVVGPQ
                     LIGIGKHSASAELYLNLDLVKEAIDAFIEGEEWNKAKRVAKELDPRYEDYVDQHYKEF
                     LKNQGKVDSLVGVDVVAALDLYVEQGQWDKCIETATKQNYKILHKYVALYATHLIREG
                     GYAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNNAEAYHSWADLRDVLFNLCE
                     NLVKSSEANSAAHEEFEMMLLIAHYYATRSAAQSIKQLETVAARLSVSLLRHTQLLPA
                     DKAFYEAGTAAKEVGWENMAFIFLNRFLDLTDAIEEGTLDALDHSDFQDTDIPFEVPL
                     PAKQHVPEAQREEVRDWVLTVSMDQRLEQVLPRDERGVYEASLVAASTGVRALPCLIT
                     GYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGGLPSTSFS
                     FQ"
ORIGIN      
        1 cagccgctag agccgccgat gcttggcggg ttgtccaggt aaccgtggga gttgtctcgg
       61 tcagcgagca tccgagaccg gtgtgcgtca tgcagttgaa gcacctgagg accctgctga
      121 gccctcagga ccttgcgctt cctaggatgg agctgcgaag gtgacctgca tggcctggtc
      181 ccagaacaat gctaaatttg ctgtctgcac agtggaccga gtggtactgc tgtacgatga
      241 acacggggag cggagagaca agttctccac caaaccagct gacatgaagt atggcaggaa
      301 gagctacatg gtcaaaggca tggctttctc tcctgattcc acaaaaattg ccataggaca
      361 gactgacaac atcatctatg tctacaagat aggagaagac tggggtgaca agaaggtcat
      421 ctgcaacaag ttcatccaga cgagtgccgt cacttgtctg cagtggcctg cggagtatat
      481 cattgtcttt ggactggctg aaggcaaggt tcgcttagca aacacaaaaa ctaacaagtc
      541 atctactatc tatgggacag attcctacgt ggtagcgctg acaaccaact gctctgggaa
      601 agggattctc tcgggtcacg cggacggcac catcgttagg tatttcttcg atgacgaagg
      661 ctcgggagag tcacagggga agttggttaa ccatccatgc ccaccctatg ccttggcctg
      721 ggccaccaac agcattgtgg ctgctggctg tgatcggagg attgtggcct atggaaagga
      781 aggccatgtg ctacagactt tcgactatag ccgtgaccct caggagcggg agttcaccac
      841 agctgctgca agtcctggag gccagtctgt tgttcttgga agttatgaca gacttcgggt
      901 gttcaactgg agtcctcgaa gaagcatctg ggaagaggca aagcccaagg agattgccaa
      961 cttatacaca gtcaccgcct tggcctggaa gcgggatggc tctcggctct gtgcgggaac
     1021 actctgtggt ggggtggaac agtttgactg ctgcctccga aggagcattt acaagaacaa
     1081 gttcgagctg acatatgtgg gccctagcca ggtgattgtg aagaacctgt cttcggggac
     1141 cagggtggtg ctcaagtcac actatggcta cgaagtggaa gaggtgaaaa tcctgggaaa
     1201 ggaacgttac ctggtggctc acacttcaga cacgctgctg ctgggagacc tcaacacaaa
     1261 ccgcctcagt gagataccct ggcagggatc gggtggcaat gagaaatatt tctttgaaaa
     1321 tgagaatgtc tgcatgatct tcaatgctgg agagctgacc ctggtggaat atgggagtaa
     1381 cgactccttg ggttctgtgc gcactgaatt catgaaccct cacctcatca gcgtccgtat
     1441 caatgagagg tgccagcgag gaatggaaga caataagaaa ttggcttatc ttgttgatat
     1501 taagacgatt gctatagtgg atctgatcgg tggctacaac attggtacta tcagtcacga
     1561 aagccgtgtg gattggctgg aacttaacga aactgggcac aagcttctct tcagagaccg
     1621 gaaacttcgt ttgcatctgt acgatattga aagctgctct aagacaatga tcctgaactt
     1681 ctgctcctac gtgcagtggg ttcccgggag tgatgtgctg gtggctcaga accggaacag
     1741 cttatgtgtc tggtacaata tcgaggcacc tgagagagtc accatgtcct ctatcagggg
     1801 tgatgttgtc ggtctggaga gaggtggtgg gaagacggag gtcatggtga cagaaggtgt
     1861 gactactgtg gcctacaccc tggatgaggg cctgattgag tttggaacag ccatcgatga
     1921 cggcaactac acccgggcaa cagccttctt ggagaccctg gagatgaccc cagaaacaga
     1981 ggcaatgtgg aaaaccttga gcaaactggc cctggaagca aggcagcttc acactgctga
     2041 gaggtgcttc tctgctttgg gtcacgtggc caaagctcgg ttcctgcatg agaccaatga
     2101 gatagcggat caggtgtcca gggaatatgg tggagaagga acggacttct atcaggttcg
     2161 agctcgcctc gccatgctgg agaagaacta caaactggcc gaaatgatct tcttggaaca
     2221 gaatgctgtt gaagaagcca tggacatgta ccaggagctg caccgctggg atgaatgcat
     2281 tgctgtggct gaggccaagg gacacccagc cctggagaag ctacgcagag attactatca
     2341 gtggttaatg gacacacagc aagaggaacg agcaggtgaa ctgcaggaga gtcaagggga
     2401 tgggctggca gccatcagcc tctacctcaa agctgggctc cctgccaaag ccgcacggct
     2461 ggtgctgacg cgagaggagc tgctggccaa cacggagctg gtagaacata tcaccacagc
     2521 cctcatcaag ggagagctct atgaaagggc aggtgatctc tttgagaaga ttcgaaatcc
     2581 acagcgggcc cttgagtgct actgtaaagg caacgcattc atgaaagctg ttgagctggc
     2641 tcgactggcc ttcccagtgg aggtggtgag gctggaggag gcctgggggg accacttggt
     2701 acagcaaaag cagctggacg cggccatcaa tcactatatt gaagccaggt gctccattaa
     2761 agcaattgag gctgccctgg gtgcccgcca gtggaagaag gcaatttata tattagatct
     2821 gcaggataga aacactgcat ctaaatacta tcctcgtgtg gcccaacact atgcatctct
     2881 gcaggagtat gagatcgctg aggagctcta caccaaagga gaccggacca aagatgctat
     2941 agacatgtac acccaggctg gtcgctggga gcaagcccac aagctggcca tgaagtgcat
     3001 gcgaccagaa gacgtgtcag tgctctacat cacacaggcc caggaaatgg agaagcaggg
     3061 caagtaccga gaggccgaga ggctgtacgt gacagtggag gagcctgatc ttgccatcac
     3121 catgttcaaa aagcacaagt tgtatgacga catgattcgc ctggtgggga agcaccatcc
     3181 agacctcctc agcgacacac accttcacct gggcaaggag ctggagacag aaggccgact
     3241 gcaagaggct gagtaccact acctcgaggc ccaggaatgg aaggcaactg tgaacatgta
     3301 ccggtccagc gggctttggg aggaggccta ccgggtggcc aaagcccacg gaggagccaa
     3361 cgcccacaaa cacgtggcct atctgtgggc gaagagcctg ggaggagagg ctgcggtcag
     3421 actgctcaac aagctggggc ttctagaggc tgccattgac catgctgctg acaactgctc
     3481 ctttgagttt gcctttgaac tctctcggct agccctcaag cacaaaaccc cggagattca
     3541 tctcagatac gccatgtacc tggaagatga gggtaaattt gaagaggctg aagctgaatt
     3601 catccgggct ggtaaaccca aggaggcagt cctcatgttt gtccacaacc aggattggga
     3661 ggcagctcag cgtgtggctg aggcccacga tcctgacagt gttgctgagg tacttgtagg
     3721 ccaggcccgt ggggccttgg aggagaagga ctttcagaag gcagaagggt tgctgcttcg
     3781 ggcccagaga ccaggcctgg ctctcaatta ttataaggag gctggactct ggagtgatgc
     3841 tctgaggatc tgcaaggact atgtgcctgg ccagctggag gccctgcagg aagagtatga
     3901 gcgagaagct accaagaagg ggggcagagg cgtggaggga cttgtagaac aggcacggca
     3961 atgggaacag gctggagagt atagccgtgc agtggactgc tacctcaaag ttcgagactc
     4021 aggaagcagt ggcctgatgg agaagtgctg gatgaaggcg gctgaactgt ccatcaagtt
     4081 cctgcctccc cagcgaagtc tggaagtggt tcgggttgta ggtccccagc tgattggaat
     4141 tggaaagcac agtgcttctg cagaactcta tctgaacctg gaccttgtca aagaagcaat
     4201 tgatgccttc attgagggtg aagagtggaa caaggccaag cgcgtggcca aagagctaga
     4261 tccccggtat gaagactatg tggatcagca ttataaggag ttcctcaaga accagggtaa
     4321 agtggattcg ctggtgggtg tggacgtagt agctgccttg gacctgtatg tggagcaggg
     4381 ccagtgggat aagtgcattg aaacggctac caaacagaac tacaagattc tgcacaagta
     4441 tgtggctctg tatgcgactc atctgatccg agaaggtggc tatgcccagg ccctggccct
     4501 ctacgtgcaa catggagccc ctgctaaccc ccagaatttc aacatctaca aaaggatctt
     4561 cactgacatg gttagctctc ctgggaccaa caatgctgag gcctaccata gctgggctga
     4621 ccttcgggat gtcctcttca acctgtgtga aaacctggtg aagtccagcg aggcaaactc
     4681 ggcagctcat gaggagtttg agatgatgct gctgatcgct cattactatg cgacacgatc
     4741 cgcagcgcag agcatcaaac agctggaaac cgtagctgct agactttccg tttcgctctt
     4801 gcgccacacc cagttactac ctgcggacaa ggccttttat gaagcaggca ctgctgccaa
     4861 ggaagttggc tgggagaaca tggccttcat tttcctcaac cgatttttgg atctgactga
     4921 tgccatcgaa gaagggaccc tggatgccct ggaccactct gattttcagg acacagacat
     4981 tccctttgag gtgccactcc ctgccaagca gcatgtcccg gaggcccaga gagaagaggt
     5041 tcgagactgg gtgctcacag tctcgatgga ccagaggctg gagcaggttc tgccccgaga
     5101 tgagcgtggt gtctacgagg cttccctagt ggcagcgagc actggagtcc gggccctgcc
     5161 ctgtctcatt acaggttacc ccattctgag gaacaaaatt gaatttaagc ggcctgggaa
     5221 ggctgctaac aaagacaact ggaacaagtt tcttatggcc atcaagacct cccacagtcc
     5281 agtgtgccag gatgtgctca aattcatcag ccagtggtgt ggtgggctcc ccagcaccag
     5341 cttttccttt cagtgactgg tgcaactgag aagtttagat ctgttcctca ttaaagttct
     5401 gtgagtagtg ga
//
