LOCUS       XM_039087092            7045 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus intraflagellar transport 140 (Ift140),
            transcript variant X1, mRNA.
ACCESSION   XM_039087092
VERSION     XM_039087092.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087092.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7045
                     /gene="Ift140"
                     /note="intraflagellar transport 140; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 2 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 24 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100362124"
                     /db_xref="RGD:2318759"
     CDS             829..5235
                     /gene="Ift140"
                     /codon_start=1
                     /product="intraflagellar transport protein 140 homolog
                     isoform X1"
                     /protein_id="XP_038943020.1"
                     /db_xref="GeneID:100362124"
                     /db_xref="RGD:2318759"
                     /translation="MALYFDHRIKAPDASSSPSHITWHPTHPFLAVASVSPSSGGNVD
                     IYLEQGEPVPDTHIERSFQATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPH
                     TTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKPLTHCIFRLP
                     PPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVD
                     EKGKTAQVASTDSSIQTLFYIEKREALVVVTQNLLLSLYVVNPEGEAEEVMKVKLSGK
                     TGRRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFGFEKGENINSVCYCK
                     AKGLLAAGTHKGRVAMWKKVPVSPSGRGAEGKDMWALQTPTELEGNITQIKWGSRKNL
                     LAVSTSDSVSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGSTHSLRTDMHISGVF
                     ATKDAVAVWNGKQVAIFEPSGSTLRNAGTFLCETSVLAMHEESIYTVEPNRLQVRTWQ
                     GTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCKNLAQMI
                     PDVGSITSLRCNANGNKISILLSKVDNSPDSKIYVYDVEMDTVNVFNFKTGHIGQIQT
                     LPFNEPPTNEAHFFMNESLASYVPVNHFWDQSEPRLFVCEALQEAPGAQPQAIDKQPH
                     MEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQSLLGLEVPHYYFTKKPGEADK
                     EDKMDSGHYHIPQMVAKKPLRDFVGLEDCDKPTRDAMLNFSFFVTIGDMDEAFKSIKL
                     IKSETVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEREPELEARVAMLAIQ
                     LGMLEEAEQLYKKCKRYDLLNKFYQASDQWQKAVEVAELHDRVHLRTTYYNYAKHLEA
                     SADCGLALSYSFFHSYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWRWWAQYLE
                     SQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQD
                     EVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMD
                     RAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIEHRQFE
                     KAVELLLAAKKYHEALQLCLEQNMTITEEMAEKMTVSKDSKDLSEESRRELLEQIANC
                     CMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQS
                     LDWRKEPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCL
                     SKAKAKNPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESVRQCELLLEEPDLDST
                     IRVGDIYGFLVEHHVQMEEYQMAYKYLEEMRKRLPSANMSYYVDQRTVDTVHQGLGLP
                     PSRIMPERVRHNSMEDHKEVYEEVIEEVDNDP"
ORIGIN      
        1 ggggcgtctt gaagcgcgcg cgaactcggg tggggactat gcactctgaa atcaggttta
       61 ggaccataaa tatatcgtag cacagcccac taacagtttt cctgctcgaa acgataagga
      121 aatgtttttt aaaactctaa tccttatgca tgtggcgttt gagacggagt attccagttc
      181 gcagaaggtc tccgtctctg gttatcccct tggctcgttg gcgtggaccg tgctactgcg
      241 cctgctctcc agcgacaccc gccgttggct aacgctggct aaagtacgca cggtcgccca
      301 gggaacccta gctgctgcaa ggttctgctg agtgccgctt gcagcggtct cccgaggcgt
      361 caacgcgcca cactcccggg cggcgtccgg tactcagaac ttcccggaga agctctcgag
      421 ccgcgccctc ccatccgagt cgatgcaact aagctccccg aggtgtcgac tgatggcctg
      481 cgtggtgggg tgggcaggat gaactcgagg ataaaagtat caggaggctt gacgcagctt
      541 gccctgagta gcaaatagtt ctggcccacc cattagcaag aaggccaaac tgtggtcctg
      601 agacgggcct gagactcaga gctgcgccgg gaaggaccga ctgtctttgg ctctttgcgc
      661 ctctagtcgc cagtcgtctt tttgggagcc atcggaggcg cggccgtccc tgaacttgct
      721 tccactttct gtagcggcgt tgtccgggcg acacggaggc acagggaatc tgcggaagtt
      781 agactcctat acctgaggtc tcatccttga ctaagtctgt gcatcaccat ggcactgtat
      841 tttgaccacc gaatcaaagc tccagatgca tccagctctc cctctcacat cacctggcac
      901 cccacccacc cattcctggc agtggcatct gtaagcccat cttctggagg caacgtagac
      961 atctaccttg aacaaggtga gcccgtgcct gacacccaca ttgagaggtc cttccaggcc
     1021 acttcactat gctggcaccc aacaaggctt atcctggcta ttggctggga aactggagaa
     1081 gtaataatgt ttaataagca ggacaaggag cagcacacgg tgcccctgcc acatacgact
     1141 gacattgcca tcctcagttg gagtaccagc gggagctgcc tggtatctgg agacaagctc
     1201 ggggtcctgc tcttgtggag attggaccag cgaggccgag tacaggggac accactcctg
     1261 aaacacgaat acgggaaacc gctcacccat tgcatcttcc ggctcccccc tcctggggag
     1321 gatctggttc agttggcaaa ggcagcagta agtggggatg agaaagccct ggacatgttt
     1381 aactggagaa aaagcagctt tggaagtttc ctgaagacgg ggtctcaaga ggggctgtct
     1441 ttctttgtca gtctcatgga tgggacagtg cactatgtgg atgaaaaggg caagactgct
     1501 caggtggcat ccacggacag ctctatccag accctgttct acattgagaa gagagaggca
     1561 ctggttgtgg tcacacagaa ccttctcctg tctctgtatg tggtgaatcc tgagggggaa
     1621 gctgaagaag tcatgaaggt aaagttgagt gggaagacag gccgccgggc agatatcact
     1681 ctgatagagg gcagtcttct tgtgacagct attggggaac ctgtgctcag gttctgggac
     1741 ttagaacggg gagagaatta catactgagt ctacaggaga agtttggctt tgaaaaggga
     1801 gagaatataa actctgtgtg ttactgtaaa gccaaaggtc tcctggcagc tggtacccat
     1861 aaaggacgag tagccatgtg gaagaaagtg ccagtgtccc caagtggccg tggggcggag
     1921 ggcaaggata tgtgggccct tcagacacct actgagcttg aaggaaacat cacacagata
     1981 aagtggggct ccaggaagaa cctgctggcg gtgagcacct ctgactccgt gtccatcctc
     2041 agtgagcaag ccatgtcgtc acacttccac cagcaagtgg ctgccgtgca gatctccccg
     2101 agcctagtca acgtgtcttt cctgtccacg gggagcacgc acagcctgcg caccgacatg
     2161 cacatcagtg gagtgtttgc caccaaggat gctgttgctg tctggaatgg aaaacaggtg
     2221 gcgatctttg aaccttcagg gtccacctta cgcaatgcag ggacattcct gtgtgaaaca
     2281 tcggtgctag ccatgcacga ggaaagcatt tacactgtag agccaaaccg actccaagtc
     2341 cgcacctggc agggcactgt caaacaactt ctgctgttct ctgagaccga ggggagcccc
     2401 tgcttcctag atgtctgtgg gactttcctg gttgcaggga cagatttagc tcactttaaa
     2461 agttttgatc tttccagaag ggaagcaaaa gtgcactgca gctgcaagaa cctggcccag
     2521 atgatccccg acgtggggag catcacttca ctgagatgca atgccaatgg gaacaagatc
     2581 agtatcctcc ttagcaaggt tgacaacagt cctgattcca aaatctacgt ctatgacgtt
     2641 gaaatggaca cagtgaatgt cttcaacttc aagactggac acattggaca gatacagact
     2701 ctgcccttta atgagcctcc gaccaatgag gcccacttct ttatgaatga gagcctagca
     2761 agttacgttc ctgtgaacca tttctgggat cagagtgaac ccaggctctt tgtgtgcgag
     2821 gccttgcagg aggcacctgg agcccagcca caggctatag acaagcagcc ccacatggag
     2881 gaaggcacgt gccacaagga agaagtatta attctctcat tcttcgcttc tgaagagcat
     2941 ggcttcctgc ttcatgacag cttcccccgg ccttcaacct accagagcct tctgggcctg
     3001 gaagtgcctc actattactt cacaaaaaag cctggagaag cagacaaaga agacaagatg
     3061 gattctgggc actaccacat ccctcagatg gtagccaaga agcccctacg agactttgtg
     3121 gggctggagg actgtgacaa gcctactcgg gatgccatgc tcaacttcag cttctttgtc
     3181 accattggag acatggatga agctttcaaa tctatcaaac tcatcaagag tgagaccgtc
     3241 tgggagaaca tggcacgcat gtgtgtgaag actcagaggc tggatgttgc caaggtgtgc
     3301 ctagggaaca tgggccatgc ccggggggcc cgagcactgc gggaagctga gcgggaacca
     3361 gaactagaag ccagagtggc catgttggcc atacagctgg gcatgctgga ggaggctgaa
     3421 caactgtata agaagtgcaa acgctacgac ctcctaaaca agttctacca ggcctcagac
     3481 cagtggcaga aagctgtgga ggtagcagag ctccatgacc gagtccacct gcgcaccacc
     3541 tactacaact atgccaagca cctggaggcc agcgccgact gcggcctggc cctcagctat
     3601 tccttcttcc acagctatga gaagtcagac acacaccgtt ttgaggtacc taggatgctc
     3661 tcagaagacc tgcagtcact ggagctgtac atcaatagga tgaaggacaa gaccctgtgg
     3721 agatggtggg cccagtacct ggagagccag gcagagatgg acaccgcgtt gcgctactac
     3781 gagctggccc aggactactt ctccctggtc cgtattcact gcttccaggg caacattcag
     3841 aaggctgctg aaatagccaa cgagactgga gactgggctg catcctacca ccttgcccgg
     3901 cagtacgaga gccaggatga ggtaaaacag gcagtgcact tctacacacg ggcacaggct
     3961 ttcaacaacg ccatccgcct gtgcaaggag aatggcttag atgaccaact catgaacttg
     4021 gccctcttga gctcccccga ggacatgatt gaggcagccc ggtattacga ggagaagggc
     4081 gagcagatgg acagggcagt catgctgtat cacaaggctg gacacttctc caaggccctg
     4141 gagctggcct tcaccaccca gcagtttgca gccctacaac tcatagcaga ggacctggat
     4201 gagaagtcag atcctgctct cctggcccgc tgctcagact tctgcattga gcacagacag
     4261 tttgaaaagg ccgtggagct tctgctggct gccaagaagt accacgaggc tctgcagctg
     4321 tgcctagagc agaacatgac catcactgag gagatggccg agaagatgac tgtgtccaag
     4381 gactcgaagg acctgtccga ggagtcacgg cgtgagctgc tagaacagat tgcaaactgc
     4441 tgtatgcgcc agggcaacta tcacctggct accaagaagt acacacaggc tgggaacaag
     4501 ctgaaggcca tgagagccct gctcaaatct ggagacacag agaaaattgt gttctttgcg
     4561 ggtgtctcaa gacagaagga aatctacatc atggctgcca attacctaca gtccttggac
     4621 tggcggaagg agccagagat tatgaagaat atcattagct tctacacaaa agggcgggcc
     4681 ttggacctcc tggctggctt ctatgatgcc tgcgcccagg tggagattga cgaataccag
     4741 aactatgaca aggcccatgg agcactgact gaggcctata agtgcctgtc caaagccaag
     4801 gccaagaacc ctctggacca ggagaccaag ctagcccagc tacagagcaa gatgacacta
     4861 gtgaagaggt tcatccaggc ccgaaggaca tacacagagg accccaaaga atccgtcaga
     4921 caatgcgagc tgctcctaga agagccagac ctagacagca ccattcgtgt cggggacatc
     4981 tatggcttcc tggtggagca ccatgtgcag atggaggaat accagatggc ctataagtat
     5041 cttgaggaga tgaggaaaag acttccttct gccaacatgt catactatgt ggaccagcgc
     5101 actgtggaca ctgtgcacca gggtctgggc ctccctccat ctcgcatcat gcctgagcgg
     5161 gtccgccaca acagcatgga ggaccacaag gaggtgtacg aggaggtgat agaagaggtg
     5221 gacaatgacc cctgatcggc ccaggtccct aggacaggcc agcagcctgc cgctagtcat
     5281 ctgaaaggca gctctgtctg tctgttgcta tcgttttaaa ttctgaattg taagcagagc
     5341 agtgggccat ggagtccagc cactgcagcc caagccttct gaatttgcct cagttttgtt
     5401 cttagaagga agactgcagg tgtttttaag tcgttcctcc tacactcctg cctctgggtg
     5461 cttggcagcc cctgtggggt ttacttcctt ttaaaagaag tagtttctcc ccccgccccc
     5521 catggtttct caacaacagt cagaaacttc tagaactttg tgtcacaagc tgcacttggt
     5581 agctagggac tcttgttact gttaactatg cctggagttg gctatgtgat ggtctccagc
     5641 agatcccagt gcccctgaga ccacagcaag gaccacccag ggcaggtctg agccctttgt
     5701 cgtcaaatag ggactgggat accaggcacc atccatggct gttcacattc cacgactccc
     5761 aaataaagtc cgttttctca gagtcggttc tctccaatga ggacccatgt aggaactaaa
     5821 gtccttgcca gcgagaaccg cagaagcagc ttgtgtggtg tccgcagcct gtttattctc
     5881 acaggaacac agtgttgcaa agcccttggg gagccagtag gctgcccctg gtctgctatc
     5941 ctagcatccc catccgagta taggaaaaac tgagtagctg tctcttgtct actcttgagg
     6001 ccctggacag agagcacaaa gttctgctct caggaggcac atcttgggcc ccatatccca
     6061 gccccagttc tgtcagttca aagctgttat gtcccatggc acaggctccc cagcattttt
     6121 agctgaccac ttagcctggc caaggtttaa gtaacagtgg ggtcatattg ataggagcct
     6181 acttcatgca tatagggacc aagcaaacgg cccccactaa agcccagggg tgcggactct
     6241 gctcctcaga ggtcttccct tcttccagtg ctgatggccg aggctccatt cgggcccctg
     6301 tggagactcc tcagggctgt ggagagcaac tggacaggag cttgtctttg agtctctcca
     6361 ggagcagcaa agaccttact gccagctccc tgcagtcctc atccacatcc ctctcagcca
     6421 catctgccaa agtagaaata gagaacacat gagtgacagg gcagagccag ttagatcatg
     6481 tctgtccctc cacacttcct cacgggccac cgagagacct ctctctgagg tcccaccaca
     6541 gagatccagc tccacaggag ggaacagaca ggtcaggtgc atagttcagc agcccaagca
     6601 ctgacctgga taaaacaagt cagagattag aacctggggg atttagcaca tgaccctgag
     6661 aagaacctgg ccttgcccaa gatggctgac agcacgggga acttggggaa taatggtcag
     6721 gaccttctgc gactaatcat cagaaagaga aaaagtagaa gatacacagg cccaggcgta
     6781 cctaggagtc ctgtgaaagc cacagtctgg ccctgtctct gggtcagtca cagagcctgt
     6841 cggaagctgg ggctctggat gtgtacttcc cagtgggtcc cagaacagtc gtgaggcttg
     6901 gggtgaagag tcagtgtctg caactgactt ttaagaaaag atgcagaggg ttggggattt
     6961 agctcagtgg tagagcgctt gcctagcaag cgcaaggccc tgggttcggt ccccagctcc
     7021 gaaaaaaaga aaaaaaaaaa aaaaa
//
