LOCUS       XM_006248107            3237 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interferon alpha and beta receptor
            subunit 2 (Ifnar2), transcript variant X1, mRNA.
ACCESSION   XM_006248107
VERSION     XM_006248107.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426990.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006248107.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3237
                     /gene="Ifnar2"
                     /note="interferon alpha and beta receptor subunit 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 23 ESTs, 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 197 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:686326"
                     /db_xref="RGD:1583177"
     CDS             504..2054
                     /gene="Ifnar2"
                     /codon_start=1
                     /product="interferon alpha/beta receptor 2 isoform X1"
                     /protein_id="XP_006248169.1"
                     /db_xref="GeneID:686326"
                     /db_xref="RGD:1583177"
                     /translation="MPSKGTGSAVGLLSLYLVVCVSLQSNSSFAFEEYPDEPCTINLI
                     LRHFRLILSWELQSQSSPPTNYTLWYTIMSKAEDLKKVENCIDITEPLCDVTDEWLEG
                     RETYVPIIVVHRGDSTVCRCSDYIWPTNVLLEPPEFKLIGFKDHINVMMEFPPATYKL
                     FGESLWKRLESTSFVIEEQTEDSIRVHKPQMNNVTGNFTYVLRDLLPKTNYCVSVYFD
                     DTPVIKSPLKCTVLQPDQESGLSESAKVGIFIGCLIVMAFVSTVIMLKQIGYICLKDK
                     FPNALNFHHFLTWIFPEWPPSEAIDWLEVIPKNTKKRLWNYDYGDGSDSDEEVPKTSV
                     TGYTMHGLMGKPLPQTSDDSPNPEEPPHEEDSGAEESDEARAGAGAEPQLPTEVKAGP
                     TEDPSGPYERRKSVLKDDSFPGEDNSSMDAPGDRVIFNVNLNSVFLRALHDEDASETI
                     SLTEDTVLLDEGPHRTESDLQIAGRDRTQLPDPSFSSQGLWTEDESSEKTDTSDSDTD
                     AGDGYIMR"
ORIGIN      
        1 tccaacccat tcgtatccag ttatttctag ggctcaggca ctacctagtc ccccgaagag
       61 gtcgcgataa actaaagggc tccccaatct ctggctccct gaactgtact tgaagtgggt
      121 ggggaggtaa tgggcgtgaa aatgtccttt tgtcgcctgc tcccgggctc gctccgcccc
      181 tggtcccgcc tccagcctcc ttctcagtcc gcggcgggcc gcggggctgg gaacccttgg
      241 cctcctggcg cctgcgtggt caagcccaga acaggggaaa cctagtggcg agtggagacc
      301 cctcgggtag gggagcgctg gccaccaccc cgccgtctct cccgccttcg gcctggggcg
      361 gctcccgctt actcaccagc cgtgcacagc tgcgcctggt gcccagagca gctcggcggt
      421 cgccccagga catcccagag ggggatccta gaggcccggc cgttcaggtg tgagagcaga
      481 acaggactta cagactgagc aggatgcctt caaagggcac cggctctgcc gttggtctcc
      541 ttagcttgta tcttgtggtg tgtgtgagcc tacagtctaa ctcatcgttt gcttttgaag
      601 agtatccaga tgaaccttgc actataaacc tgatattacg acatttccga ctgattttat
      661 cctgggaatt acaaagccag tccagcccac caaccaacta cacactctgg tacacaatca
      721 tgagcaaagc tgaagacctg aagaaggtcg agaactgtat agatatcacg gagccattat
      781 gtgatgtgac tgacgagtgg ttggagggcc gggaaaccta tgtccccatc atcgtagtgc
      841 acagagggga ctcaacggtg tgccgctgct cagactacat ctggcccaca aatgttcttc
      901 tagagccacc agaatttaag cttattggct ttaaggacca cataaacgtg atgatggagt
      961 ttccacctgc cacttacaag ctattcgggg aaagcttatg gaaaagactg gagtctacat
     1021 ccttcgtcat cgaggaacag acagaggaca gcattagggt gcacaagccc caaatgaata
     1081 atgtcactgg gaacttcaca tatgtcctta gagacttact tccaaagaca aactactgtg
     1141 tgtctgttta ttttgatgat acacctgtaa taaaatctcc cttaaaatgc accgtccttc
     1201 agcctgacca ggaatcagga ttatcagagt ctgccaaagt gggaatattt attgggtgct
     1261 tgatagtgat ggcttttgtg agcaccgtca taatgctgaa acagattggt tacatatgct
     1321 taaaagacaa attccccaat gccttgaact tccatcactt tttaacctgg atattccctg
     1381 agtggccacc ttcagaagcc atcgactggc tggaagtcat tcccaaaaac acaaagaaga
     1441 gattgtggaa ttacgactat ggggatggca gtgacagtga cgaagaggtc cccaaaacaa
     1501 gtgtcactgg ctataccatg catggattga tgggcaagcc tctgccacaa acctctgacg
     1561 attcacccaa ccctgaggaa ccccctcatg aagaagattc aggtgctgag gaatctgatg
     1621 aagctagggc aggggctgga gctgagccac aactccccac agaggtcaag gcagggccta
     1681 cagaagaccc cagtggcccc tatgagagaa gaaagagtgt gctcaaggac gactccttcc
     1741 ctggggagga caacagctcc atggatgcgc ctggggacag agttatcttc aatgtgaact
     1801 taaactctgt gtttctaaga gctctccacg atgaagatgc ctcagaaacc atatctctca
     1861 cagaagacac ggtcctccta gatgagggtc cccacaggac agagtcagac cttcagatag
     1921 ctggccgtga caggacacag ctgccagacc ctagcttctc ttcccagggt ctatggactg
     1981 aagatgagtc atctgaaaaa acagacacct cagattccga tactgatgca ggggacggct
     2041 acatcatgag atgactccaa agcagttctt tggctggagc tgggcaccta cagggttctg
     2101 ttcacagcct gactccatac cttgttgtct ccaggtgtct gtgagggaga gactagagaa
     2161 tgtcccagcc ctcttggttc ttgctggatg cccttctcta tgcagattac caattcgggc
     2221 atcaggattg tttacacggg tcataaggtc atgagtgtga cctgcccacc ccctttcccc
     2281 taatgcacaa aggtggtttg tattatgctt ccaaaggaac agtgttctgt ggttttcaga
     2341 ggcagccaag gtctcccatc cctgtgttgt ttctaggaaa tgattgaatt ggggaagaga
     2401 aaaggaaaga aaaactggtc acgaagtatt cagcaagatt ccaggattga acctgaagtg
     2461 gggcagaagg ggaggaggta gggcatcctg agctggcaag gtttgagccc ccgatgtctg
     2521 ggcacttccc agatgtcaag atctgtctcc tccactcaga aattcataca cagccaccca
     2581 taaaaccctt acagtttaag tgaggagagg gaggagcctc gtgaaggatc ctagaatctg
     2641 acaagtgcct cagagagagg aatctcatgg ccatatttta aggtttttcc cgattcacct
     2701 cttcgacctt cagtttctta atttatggat aaagggattg agcaggtaat ctccatcatc
     2761 gagactcaag gggaggtggc gagcccaggt tgatgaaggg tgtaggaccc tcccatcttt
     2821 ctcttcttac cccaaacccc aagtgtctct cacatgtttc tactcagagg agctgatcct
     2881 ggctccaaag cttcctatag attattaccc acgtaaagcg ttcaaaaaaa aaaaaaaaaa
     2941 aaaaaaaaaa ccttgtggaa ctgaggggct ggagagatgg ctcagaggtt aaggaaggag
     3001 gccctcaaag ctgccctctg tgcgacctca gtctcactca tccagaggtc tccctgacac
     3061 agcgaccatt tctctgccct ctgaatacca ctatccttcc cagcgctttt cttttaagca
     3121 tagcggctgg gagttggctt tttaatgctt acacttagtt gggttttttt ttcttttaaa
     3181 ttttatacga tgtttgaaat tgtcagagag taatacaaaa gtacttttca tacaaac
//
