LOCUS       NM_001408749            2222 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus interferon-induced protein with tetratricopeptide
            repeats 1B-like (Ifit1bl), transcript variant 1, mRNA.
ACCESSION   NM_001408749 XM_220058
VERSION     NM_001408749.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Fensterl,V. and Sen,G.C.
  TITLE     Interferon-induced Ifit proteins: their role in viral pathogenesis
  JOURNAL   J Virol 89 (5), 2462-2468 (2015)
   PUBMED   25428874
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 23, 2022 this sequence version replaced XM_220058.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.1193864.1,
                                           SRR26643288.6940.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                JAXUCZ010000001.1  241543489-241543555 c
            68-2222             JAXUCZ010000001.1  241535776-241537930 c
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q53"
     gene            1..2222
                     /gene="Ifit1bl"
                     /gene_synonym="Ifit1lb"
                     /note="interferon-induced protein with tetratricopeptide
                     repeats 1B-like"
                     /db_xref="GeneID:294090"
                     /db_xref="RGD:1304872"
     exon            1..67
                     /gene="Ifit1bl"
                     /gene_synonym="Ifit1lb"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..1457
                     /gene="Ifit1bl"
                     /gene_synonym="Ifit1lb"
                     /note="isoform 1 is encoded by transcript variant 1;
                     interferon-induced protein with tetratricopeptide repeats
                     1-like B"
                     /codon_start=1
                     /product="interferon-induced protein with
                     tetratricopeptide repeats 1 isoform 1"
                     /protein_id="NP_001395678.1"
                     /db_xref="GeneID:294090"
                     /db_xref="RGD:1304872"
                     /translation="MEQVLSPSTMSEESRRNLIHDSLVELRCHFTWELVIKDNYMPDL
                     EAKILETEFLDTNYNMGMHNLMAYVRHLKGEQEEALQSLKEAEALIEGEQLGKRSLVT
                     WGNCAWVHYHRGSLAEAQIYLDKVENVCREFASPFRYRMECAEIDCEEGWALLKCGGS
                     NCTRAMACFAKALQEEPENPEYNAGYAITAFRMDFSNEISLEPLRKAVRLNPEDPHLK
                     VLLALKLQDLGKQDEAEKHIEEALPKIPSRNNIFGYVAKFYRRKGCVEEALEFLERAL
                     KTKPSSVYLHFQIGLCHKSRVFQIKEATNMHPKGKDRERADQSIRSAIYYFEKTLDLK
                     PTYERAYIDLAEMYAESKQFEEAEEAFQKVLSMLSNLEVHMQQEIHFRYGKFQQFHMK
                     SENIAITHYLKGLKIEVTSIFRDKLLKALQKLAERRMQQNVHVLESLSLLGFVYRLKG
                     DTRKAMSCYEKALRLTEELNPEF"
     exon            68..2222
                     /gene="Ifit1bl"
                     /gene_synonym="Ifit1lb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttggaaga gtctcttggc ctgaattaaa gtgctatgga acaagttctt tctcccagca
       61 ccatgagtga agaatctcgt agaaatctca tacatgacag cctggttgag ctgagatgcc
      121 actttacttg ggagttggtt ataaaagata actacatgcc tgatttggaa gcaaaaatct
      181 tggagactga gttccttgat accaactaca acatgggaat gcacaacctc atggcctacg
      241 tgagacacct gaaaggtgag caggaggaag ccctgcagag cttgaaagag gctgaagcct
      301 tgatcgaggg agagcagttg ggcaagagaa gcctggtgac ctggggcaac tgtgcctggg
      361 tgcattacca caggggcagc ttggcagaag cccagatcta cctggacaag gtggagaatg
      421 tttgcaggga gttcgcaagt cccttccgct acaggatgga gtgtgctgag atagactgtg
      481 aggaaggctg ggccttgctg aagtgtggag gaagtaattg tacacgagcc atggcctgct
      541 ttgcaaaggc tctgcaggag gagccagaaa accctgagta caacgctggc tatgcaatca
      601 cagcctttcg catggatttc tctaatgaga tttctctaga acctctaagg aaggctgtca
      661 gattaaatcc agaagatcca caccttaaag ttctccttgc tctaaagctt caggatttag
      721 gaaaacaaga tgaagcagaa aaacacattg aagaagctct gcccaaaata ccctcccgaa
      781 acaatatctt tggatatgta gccaaatttt accgaagaaa aggttgtgtg gaagaagctc
      841 tcgagttcct cgaaagagcc ttgaagacaa aaccttcctc cgtctacttg catttccaga
      901 ttggcctttg ccataagagc cgagtgtttc aaataaagga agctacaaac atgcacccta
      961 aggggaagga tagagaaaga gcagaccaat ccattcgttc tgctatatat tattttgaaa
     1021 agactttaga tctgaaaccc acatatgaga gagcttatat tgatctggct gaaatgtatg
     1081 cagaatctaa acaatttgaa gaggcagagg aagcttttca gaaagtgttg agcatgttga
     1141 gtaacttgga agttcatatg cagcaagaga ttcatttccg ctacggcaag ttccaacaat
     1201 tccatatgaa gtcagaaaat atagccatca cccattactt aaaaggcctg aaaatagagg
     1261 tgacttctat attcagggat aaacttctca aggctttgca gaagctggct gaaagacgca
     1321 tgcagcagaa tgttcatgtc ctggaaagtt tgagcctcct tgggtttgtc tacagactga
     1381 aaggggacac acgtaaagcc atgtcatgct atgagaaggc cctgaggctc acagaagaat
     1441 tgaaccccga gttttgaggt acaggtcatg aagtggagta caactgtggg catgactccc
     1501 tattctacta ttctgttgta gctcttgcct taaatataaa gagtcgaatg aagcaagatg
     1561 cagatgatgc cgtttttgta tcttgccttt ctatagcact gatttttttc tttctttttc
     1621 tttttgtctt tttttttttt tttggtcacc aacctgcggg tgtgtcacag aagtgtccat
     1681 tcttctacca cacatagctg cacattttcc ttatgagtgt gcctttggag tgcatgacct
     1741 ataccatcag tcttccagta gcctgatcaa agggcacttg gcccgggaag gataattttt
     1801 aatgagatgt cccaaccttc agcaacatct gagagcaaaa taaaaagcaa tggtgagcat
     1861 gaaaagggag agaagttcaa gatttcctta ccatgtttca gtccgtagtt ttattttcat
     1921 aggcttttct gtagatcaat gactcccaac catataatca atgcaccttc ttgtatacaa
     1981 gtgtctgatt ttagacaatt gtggatttct ctggtccaaa tacattggta cttatttatc
     2041 actaagaatg ctttaatgcc ttcaggaagg taggctaaag gagccacctc tttggaatgt
     2101 gccaacaaaa aaaatgacat aatagctgtc taacactgtt cagtctattg agaattatgt
     2161 gaaagtgcct tgttattttt ctaaccctat cgtattcagt aaaatctgct aatatcacag
     2221 aa
//
