LOCUS       NM_001107729            2922 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus interferon-induced protein 44 (Ifi44), mRNA.
ACCESSION   NM_001107729 XM_001079908 XM_227821
VERSION     NM_001107729.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473952.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_227821.4, XM_001079908.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q45"
     gene            1..2922
                     /gene="Ifi44"
                     /note="interferon-induced protein 44"
                     /db_xref="GeneID:310969"
                     /db_xref="RGD:1310523"
     exon            1..106
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     exon            107..667
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     CDS             226..1494
                     /gene="Ifi44"
                     /codon_start=1
                     /product="interferon-induced protein 44"
                     /protein_id="NP_001101199.1"
                     /db_xref="GeneID:310969"
                     /db_xref="RGD:1310523"
                     /translation="MAMRTRLTWEQEKYLRNYFGEKKFCLLYKASVQEFAGQNLLYKC
                     QDQGPTMVVVYSEKYVIGVYLQEGFQENKVSTTLFTIQETGLSPCALGPCLPLSLFRY
                     EETSDFFILLDKKTVTISSEIRKVLRLPSLSGDTFIQECEAFRCDELLDERKTRGIVG
                     LCSNLLDALRNYKPYGDLVHQTRILLLGPIGAGKSSFVNSVKSVFKGSITHQASVGCD
                     RNGISDKYRTYSIMSKNDSGPLPFVLCDSLGLSENEGLHTDDICHILKGHTPDRYQFD
                     FRKPITPNHPNYIHDPLLKDRIHCVVFVFDINSFNQLSCELVAKIKQIRRDLIKHGIL
                     HLALLTHVDSLTWITKGDLLDIYSCNPVKVKLGVFHRLFGFALSDILVVSNYDSEWQL
                     DPVKNMLILSALKEILYTANGFLEDLPLNK"
     exon            668..704
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     exon            705..900
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     exon            901..1047
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1219
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1320
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..2922
                     /gene="Ifi44"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgcaagca gtggaaaagt ttctcttttc gttttctgca ggcttggcca ctgagatgga
       61 agctgccctc agtagcagcc ttggggcaga atcttcgccc agacaggctc acctcctgct
      121 cagtaacttc ctgcaagcca tgagacaata agagcacttc gtgtacatct ttttaggttt
      181 cagaatttca agagaaccgt gttggctctc ccactggact cgagtatggc catgagaacc
      241 cgtttgacct gggagcaaga aaagtacctg cggaattact ttggagagaa gaagttttgt
      301 cttctttaca aggccagtgt gcaggagttt gctgggcaga atttgctcta taaatgtcag
      361 gatcaaggtc ctaccatggt agtggtttat agtgagaagt atgttattgg tgtgtacctg
      421 caagagggct ttcaggaaaa taaagtttcc accactcttt ttacaatcca agagactgga
      481 ttgtcaccat gtgcactagg accatgtttg ccactttcat tgttccgtta tgaagaaact
      541 tctgatttct ttatactgtt agataaaaaa actgtgacta taagttcaga aatccgtaaa
      601 gtgctccgac tgccttctct cagtggggac acatttattc aggagtgtga agcttttcgg
      661 tgtgacgagt tattggatga aagaaaaaca agaggcattg ttgggttatg cagtaactta
      721 ctagatgccc tgagaaacta caagccgtat ggagacctgg ttcaccaaac acgaattctg
      781 ctgttgggtc ctattggagc tgggaagtct agctttgtca actcagtaaa gtctgtgttc
      841 aagggcagca tcactcacca ggcctcggtg ggctgtgata gaaatggaat atctgacaag
      901 tataggacat attccatcat gtctaagaat gacagtggcc ccctgccatt tgttctgtgt
      961 gactcactgg ggctgagtga gaatgaaggc ttgcacacag atgatatatg ccacatctta
     1021 aagggccaca ctcctgacag ataccagttc gatttcagga aaccaatcac accaaaccat
     1081 ccaaactata tccatgaccc actgctgaag gacagaattc attgtgtggt gtttgtgttt
     1141 gatatcaatt cttttaacca gctctcttgt gagctagtgg caaagatcaa gcaaattcga
     1201 agagacttga taaagcatgg cattctgcat ttggctttgc ttacacacgt ggatagcctg
     1261 acttggatta caaaaggaga tctgctagac atatacagct gtaatcctgt gaaggtcaag
     1321 ctgggagtat tccatagact ctttggtttt gccttatctg acatcttggt ggtgagtaat
     1381 tatgattcag agtggcagct ggacccagtg aagaacatgc tgatcctctc agcactgaaa
     1441 gagatcctgt atactgcaaa tggattctta gaggatttgc ctttgaacaa ataagtagac
     1501 tgataatctt ggagcttgaa ggtatcatca acttggctat tttttgcctg ggtctattga
     1561 atacttgcta agtctgtttc tctaggatgt tggcatgagt agcactgacc tttaatgttg
     1621 aatgtatttt tctctgtaca tttccttcct gacttcttct tcaaatctgt cttggaggac
     1681 ctgtataacg tcactcttgc ttcaaaaaga aaattatgaa atgaactata tcttctctcc
     1741 ttttctttta aactgggagg ctttgcttga gacctagaac tggattggat caacattgtc
     1801 tctcatcaga tatgatctta taggatctgt cccttcctta ggaccaaata catctgatgt
     1861 aatacaaaca tacatacatg cattaaaata tatgatgtat ataatagatt atgcatacaa
     1921 tatacattta cattataaat taatatgcgt aaatttatat aattatccaa atatctagga
     1981 accaaaaatg agaaaaatat ttttctgaga tgggcctaat ttgcttaatg gattattttt
     2041 agttgcatac atatatttac ttgggaaaaa cctaactttt aactttgtag ctgaagaaaa
     2101 gttccattgt gaagatagca catatcctgg attcattctt tcatcattgt acaccgagtt
     2161 agtgtctgtc cttagctatt gtaaataatg ctgtatacac aagtgtgaaa gtattttgtg
     2221 atacttttag cttcactttt tgtccccccc ccacctcatt tatttctgct tcatttagtg
     2281 tgattcctcc taggtaaata tttatcattt ccgaatataa actcaatttg gccttaaata
     2341 cgttctatta tcaaactgca tatgctgccc tgttaccatt agagattaaa tattttgatt
     2401 tactttattc aaatcttatt tcatcgcatt agagcactgc attcttttca tttgctgctg
     2461 tttctgaaag gactgggaaa gtctcatcct gctagcttgt agtctgactc tatgttctgg
     2521 gttttgttag ttctctttct tatagtatga agggttctag tcaggatgag cttagttctc
     2581 tagcaacctt ctgcttgctt ctcactaaaa acccactaag aacattttgt ttattttatt
     2641 ctaggtatca gaagaaaaaa gttaccatgt tgcaaaaaca taaaaaggag agactttatc
     2701 atgccttaat aatgaagtca tcaacaaagt agtgagaaca gagggaatga aggtggtgca
     2761 gaaactggag tgcactgcaa ctgtgccagg gaagcacaag attacagtgc ccttcatgaa
     2821 aagagaaata agataaaaat gatccattat aaaacccaat cacaactctg ttggatttat
     2881 attctgtatc tatgaaaata aaagttaatt gtctaaaact cc
//
