LOCUS       NM_001134703            5711 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus intermediate filament family orphan 2 (Iffo2),
            mRNA.
ACCESSION   NM_001134703
VERSION     NM_001134703.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5711)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jun 4, 2021 this sequence version replaced NM_001134703.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.1293996.1,
                                           SRR26643295.23517.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-920               JAXUCZ010000005.1  157114089-157115008
            921-981             JAXUCZ010000005.1  157142681-157142741
            982-1077            JAXUCZ010000005.1  157144428-157144523
            1078-1218           JAXUCZ010000005.1  157145859-157145999
            1219-1358           JAXUCZ010000005.1  157147021-157147160
            1359-1479           JAXUCZ010000005.1  157153440-157153560
            1480-1572           JAXUCZ010000005.1  157153672-157153764
            1573-1703           JAXUCZ010000005.1  157154830-157154960
            1704-5711           JAXUCZ010000005.1  157156128-157160135
FEATURES             Location/Qualifiers
     source          1..5711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..5711
                     /gene="Iffo2"
                     /note="intermediate filament family orphan 2"
                     /db_xref="GeneID:641315"
                     /db_xref="RGD:1624207"
     exon            1..920
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     CDS             271..1809
                     /gene="Iffo2"
                     /codon_start=1
                     /product="intermediate filament family orphan 2"
                     /protein_id="NP_001128175.2"
                     /db_xref="GeneID:641315"
                     /db_xref="RGD:1624207"
                     /translation="MVNSLLFGEMALAFGCPPGGGGCASGGGGGGAGPGPSPVTAALR
                     DDLGSNIHLLKGLNVRFRCFLAKVHELERRNRLLEKQLEQQQSERDRRLRYKTFSREQ
                     AVQTGPELLRPPAAGGGQALGAATGVNANAVALGGLPPGGGSHPQHYGRLPGTIWSYT
                     QVRRTGGGGVETVQGPGVSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRW
                     EEELAKCMNLQTMVDTLQEAAQEAEAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDT
                     KIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKDRKVASDDDISE
                     QDGEVNRFSDEEVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFT
                     NCNPTIDLQGEQEENLGNLIHETESFFKTRDKEYQETIGQIELELATAKSDMNRHLHE
                     YMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSSVASSDSGSTDEIQDDLEREADVE
                     PMVS"
     exon            921..981
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1077
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1218
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1219..1358
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1479
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..1572
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1703
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..5711
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagagtcctc tgcgagccgc ttctgcggcc ggtccacagc agctctgaca gtcgcggcgc
       61 aggcacggga cccctaccag ccccacgcag ccaccgcaac gtccggctcg tcccaccatc
      121 tctcccgacc ctgcggaacc acatctggac actaccccgg ccgctctgga gcccgcgccc
      181 gccctggccc ggccgcgccg ggagcccggc cccgagctgg agccgcatct ggagccgcgg
      241 gcccggggcc ctgagccacg cagccggcgc atggtcaact cgctgctgtt cggggagatg
      301 gccttggcct tcggctgccc gccggggggc ggcggctgcg caagcggcgg cggtggtggc
      361 ggggccgggc ccgggccctc gcccgtaacg gcggcactgc gggacgatct gggctctaac
      421 atccacctcc tcaaggggct caacgtgcgt ttccgctgct tcttggccaa ggtgcacgag
      481 ctggagcggc gcaatcggct cctagagaaa cagctggagc agcagcagag cgagcgcgat
      541 cggcggctgc gctacaagac cttctcccgc gagcaggccg tgcagaccgg gccggagctg
      601 ctgcggccgc cggctgcggg cggcgggcag gccctcggcg cggccaccgg cgtcaacgcc
      661 aacgccgtgg ccctgggcgg cctgcctccc ggtggcggct cgcacccgca gcactacggt
      721 cgcctgcccg ggaccatctg gagctacact caggtgcggc gcacgggagg cggcggcgtg
      781 gaaacggtgc agggccccgg cgtgtcctgg gtgcacccgg acggcgtagg cgtgcagatt
      841 gacaccatca cgccagagat ccgcgctctc tacaacgtgc tggccaaggt gaagcgcgag
      901 cgtgacgagt acaaacggag gtgggaggaa gagctggcca aatgtatgaa ccttcagacc
      961 atggtggaca cgctgcagga ggcagcacaa gaagccgagg ccatccagga ggagatgaac
     1021 gagaagatcg aacggctcaa ggccgagctg gtggtgttca aaggtctcat gagtgacccc
     1081 atgacagacc tggacacaaa gatccaagaa aaggctatga aggtggacat ggacatctgc
     1141 cgccggatcg atatcacggc taagctgtgc gatgtcgcac agcagcggaa ctcggaagac
     1201 gtgtccaaga tcttccaggt ggtccccaag aagaaagatc gtaaggtggc ttcagatgat
     1261 gacatctccg agcaggatgg ggaggtgaat cggttctcag atgaggaggt cggttccatg
     1321 aatatcacgg atgagatgaa acgcatgttt aaccagctgc gggagacctt tgattttgac
     1381 gacgactgtg acagcctgac gtgggaggag aatgaagaca cgttgctgct atgggaggat
     1441 ttcaccaact gtaacccaac cattgacctg cagggcgagc aagaagaaaa cttgggcaac
     1501 ttgatccatg agaccgagtc cttcttcaag accagagaca aggagtacca ggagacgatt
     1561 ggccagattg agctggagct ggccacagcc aagagcgaca tgaaccggca cctgcatgag
     1621 tatatggaga tgtgcagcat gaagcgaggc ttggacgtgc agatggagac ctgccggcgg
     1681 ctcatcaaag gttctgccga caggaattca ccgtctccca gctctgtggc cagcagtgac
     1741 tcaggaagta cagatgagat ccaggatgac ctggagcggg aggcggatgt ggagcccatg
     1801 gtcagctgat gacggaggcc ggacgctcct ggtggtcttg gtgatggggc ccagcctcct
     1861 ctccccactg agccatgagg gctcctcgac ttgggctcca gtcctcgaca cacagacttc
     1921 tgtcctccct tctccggagg cccagcggga ccgctgcttc cttccttcct ccaccaccca
     1981 cccatggaat ggtgctgtcg atttttctat tgtccccccc acaccacaaa tgcagacttc
     2041 tgtgcgtcga tgcagtgcaa ttgtgccttc tcccttaagc tgagccactt tgagctccaa
     2101 agaattcttc ctagcaggtg tttttttata caaaactaag gtgagggtgg ggcctggggg
     2161 cgtggtatct tttggttttc tccctcccac ctgctcctct gattggacat gagctttgct
     2221 ccctccctct gtcccaagat gacttgcggg aatctgcctt cccgaggaag gagactattt
     2281 acctccaggt ctgggtgagg aagagtccac aatcctttct cacccaccga gacagcgatg
     2341 ggtggaagtg gagggaggga agaccaattt tttttttctt cttttggatc tagtggcgat
     2401 gtgtggggaa aggcactgtg ggggaaggaa gagcctcact gtgtttaaac tatgcaaaaa
     2461 aaaaaaaaaa aaaccacaca aaaaaacaaa aactaaaagc agcttgcctt atatcactgg
     2521 ggaaggcagg tcctctctca gacttctggg aactgggagg gaggccaagg ttagcatgag
     2581 accctcatag cctctgaggg tgagcggtgg atttgggggt gataccagtc agtttgctgg
     2641 tgaggcctgc atgcaattct gcaagccggc ccactggatg gctggctttc ttggggacct
     2701 ctgtggggtg gggtgggtgg gctggtggtc ttttattctc ctgatgactt gatgttcttt
     2761 cccgcttctc cagtcacctg ccaggtccca cggttgtaat ttctctgtga gaaagtatga
     2821 acaggtcagg cctggtatct actctgaccc ccacggcacc gtcttggtcc tccgttgtcc
     2881 ctctggctgg ggaaaaaaag ttttgtgagg gaagaggggg tcaggtggcg aggctgctgg
     2941 cggtggctgg agagaagcct caagtgagga ccatcctcat tcatacctgc tttccatacc
     3001 cacttggctg gacgctgagc cagtgattcc ccaaggctcc accgggcctg agttaagggg
     3061 ccataaagta gagcatccgt ctagtctcag ctggggactc gcctagcaat gatcagattt
     3121 tgtttttatt tctttcctta tttttgtgtc cactctagtg gttttgatgg cctatgttgt
     3181 ttttattgac ccagaggctc cccctggagg tcaaaggaac aaaatgtccc cagggatcag
     3241 aacccatggc cctctgaggc atgtgtgtga aagggcagag gactccggag ccataccgac
     3301 cctcctctgc atccttccgt ttctctctac gtggtcccat cacctgtttt gcatttagaa
     3361 ccagtgtaca tagtaggctt atgtatggac agagaggtga gagaatgtgt ttgttggtga
     3421 ctaatgtaat ttatcagaat ttggtggcct ttcttttgtg tgttttccat ggtgtgggga
     3481 ggggtttccc actggtcccc gtgcagcctg tctgcagggg ttcacgtatc atctcttgat
     3541 gtccaaacag tcccttctgg caggtacttg gagggacaat agtttgggat gagacatagc
     3601 ccctcttctc acccccccat cctttcttgc caacccctcc cctccttttt ttaaaggtta
     3661 cagggttcac tcgcttctgg ttattattat tgtgtgttat tgatattatt gttttgtttt
     3721 tattttaacc aaagggtatc agagccagat gggtctgaac cttagctgct gtaaagattt
     3781 ccgtttctat gagggcagga agatggctgc cctcgtgggt ctccttggct gaggctgggg
     3841 aaggcgccca tccagcgata aagagataga ggctgggagt ccggcaggca gagtagaagc
     3901 cggcccccga gtctcgttct tcaaggtggt ggtgggctga cacatagctc tagagttaag
     3961 acagtaagca acagtataaa catttgtggt gatggggaag ttggtgttct gtggtattat
     4021 tttatttccc aactgtatag ataggtcatt tgtccagggt gtatgagaaa ggcaggctcc
     4081 tgtggcttcc ttcttcctga ctttcgaagt ctgctttccc ctgggggttg aggctttgag
     4141 gcaggaggat gaggggaggg gagcaaagat gtggtaggcc tgcgtcctgg ctgggtctgg
     4201 gctccgggcc tggcctcctc tttgtgtttg ttttgatttg ttcgtttctt agttcgttgc
     4261 cagtgggtcc tgcttgtgcc cccacagcct gctgctcact ggggcagcgc ctgcccagtc
     4321 tggacgaact cgtccatcct tgtgaacatg tgcatacttc ctcttgactt ttctatttct
     4381 gagcccagtg tcatattgac actggtggtt cagggcttct cagatgggct ccccgtgttg
     4441 cccctgctca tgctcctagt ttgggggtca catacacagg cccagcaggg agacagcatc
     4501 cttttaggtc cctggttggt catgaaatat acacatgcgt gtacacacac acacacacac
     4561 acacacacac acacacacac acacacactc cgctctgact ccaaaggaga aaggtgggga
     4621 ggaggttcca cctcctcacc gtggcagtgt gtctggaagg catgtccact taggactctg
     4681 ttctgtgggt agaactcaga cgtcctacgg agtgtcaaac cactttgact ttagggtggg
     4741 gatgggttaa gggataagat aaggtgtaac ttaagctaaa tgtattctat ttataaagca
     4801 agagactgta tttttatgaa aggaaaaggt ttttaatcta gggtaggccg tcatggtggc
     4861 acagcatttt gctgtggcta agataccgtc ctgctcattg actcccgtgt gtgctcatca
     4921 gtcacccctc tcctcggctc gccttccatc gtcagcaaca tctgcacaca gctggggcag
     4981 gaatatgttg tcctttccca gcccacggct cctcagaagt cttgggagga aactggggtg
     5041 gggagggcgg gtggactgca gaaaactgag gtgagggaga ggtgcttcag aagtaggttc
     5101 tgattagtca ccccaagtcc cctctggcca gacctgcttc cattcagctg tgtggagaga
     5161 gtaggaggga agttctgtgg ggctggggaa cacaggactc ctttggggct taggggctta
     5221 ctatgtgtga agttgtcagg cagctggagc aggcacagaa gggaccccga tgctcagagc
     5281 tcagccctgt ctgtgtctac tccaggtcaa ggtcaagctt ggttttagat gaaggaccag
     5341 gaaactggag gctctcctca gacatacagt ctctctggga agggatttcc aggctcagcg
     5401 tgggctgtgt gtgagtctca ggcaaatgcc tcacctttcc agttccttcc caagcccgga
     5461 agagatgtga attccccacc atgacatgac ccctttccgc acattgtagc atctacctgg
     5521 tttttagtcc caccctaccc accgttgctg tgtctgtcag ctgggtctga aaatcaccgg
     5581 gaggggtttg tactcataaa aagactactg accctaccag aaaaccaacc tgtttactgt
     5641 actgttgtaa atactgtgcc ctttatatcc tgtatattgg cttctttgga ataaagtaaa
     5701 atgtcttaga a
//
