LOCUS       NM_001108647            2372 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus intermediate filament family orphan 1 (Iffo1),
            mRNA.
ACCESSION   NM_001108647 XM_001065459 XM_342758
VERSION     NM_001108647.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342758.3, XM_001065459.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMD00132261, SAMD00132264
                              [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2372
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /note="intermediate filament family orphan 1"
                     /db_xref="GeneID:362437"
                     /db_xref="RGD:1308257"
     exon            1..795
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..1705
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /codon_start=1
                     /product="non-homologous end joining factor IFFO1"
                     /protein_id="NP_001102117.1"
                     /db_xref="GeneID:362437"
                     /db_xref="RGD:1308257"
                     /translation="MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPSASLA
                     SAGPSAYSPPGPGSAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLE
                     KQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPA
                     RSPAGPLASSAACHSSSSTSTSTSTAFSSSTRFMPGTIWSFSHARRIGPGLEPTLVQG
                     PGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVT
                     ELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICR
                     RIDITAKLCDLAQQRNCEDVIQMFQVPSMGGRKRERKAAVEEDTSLSESDGPRQPEGD
                     EEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQ
                     GEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKSDMNRHLHEYMEMCSMK
                     RGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPMNMAVPLGSPVPGPGRH"
     exon            796..856
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            857..952
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1093
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1251
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1372
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1468
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            1469..1599
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1652
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
     exon            1653..2372
                     /gene="Iffo1"
                     /gene_synonym="RGD1308257"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcagaaggc gcagccatga atccgttatt tggtcccaat ctcttcctcc tacagcagga
       61 gcagcagggc ttggcagggc cgctggggga ccctctggga ggtgaccact ttgccggggg
      121 aggggacctt ccctcggctt cgcttgcctc ggctggccct tctgcctatt cgcctcccgg
      181 gcctggttcg gcgcccccag cagccatggc tctacgcaac gacctaggct ccaacatcaa
      241 cgtactcaag accctaaacc tccggtttcg ctgcttccta gccaaggtgc acgagctaga
      301 gcgccgaaat cggctgctgg agaaacagct gcagcaggct ctagaggagg gtaagcaagg
      361 caggcggggc ctggcccgcc gtgaccaggc ggtacagacc ggcttcatca gcccgatccg
      421 gcccctgggg ctgcccctga gctcccggcc ggccgccgtg tgtcccccat cagcgcgggt
      481 gctgggctcg cccgctcgct cgccagccgg acccctagca tcctctgcgg cctgccactc
      541 atcatcctcc acctccacct ccacctccac tgccttctcc tcgtcgaccc gctttatgcc
      601 cggcaccatc tggtccttct cacacgcacg ccgaattgga ccgggattgg aacccacgct
      661 ggtgcaaggg cctggcctgt cgtgggtaca ccctgacggg gtgggcgtcc agatcgacac
      721 gatcactccc gaaatccgtg cactgtataa cgtgctggcc aaagtgaagc gggagcggga
      781 cgagtacaag cgaaggtggg aagaggagta cacagttcgg atacagctac aagagcgagt
      841 cactgagctc caggaggagg cccaagaggc cgacgcctgc caagaggagc tcgccatgaa
      901 ggtggagcaa ctgaaagctg aactggtggt cttcaagggg ctcatgagca ataatctgac
      961 agagctggac accaagatcc aggagaaggc catgaaggta gacatggaca tctgccgccg
     1021 cattgacatc acggccaagc tctgcgacct ggctcagcag cgcaactgtg aggatgtgat
     1081 ccagatgttc caggtcccgt ccatgggggg gcggaagcgg gaacgcaagg ctgctgtgga
     1141 ggaggacacc tccctgtcgg agagtgatgg gccccgccag cctgaggggg acgaggagga
     1201 gagcacagcc ctcagcatca acgaggagat gcagcgcatg ctcagccagc tgagggagta
     1261 tgattttgag gacgactgtg acagcctgac gtgggaggag actgaggaga ccttgctgct
     1321 ttgggaggat ttctcaggct atgccatggc ggccgcagag gcccagggag agcagcagga
     1381 ggacagcttg gagaaggtga tcaaagatac tgagtccctg ttcaaaaccc gggagaagga
     1441 gtaccaggag accattgacc agatagagct ggagctggcc acggccaaga gcgacatgaa
     1501 ccgccacctg catgagtaca tggagatgtg cagcatgaag cgggggctgg acgtgcagat
     1561 ggagacctgc cgccgcctta tcacacagtc cggagaccga aagtctcctg ctttcactgc
     1621 ggtcccgctt agcgacccgc cgccgccgcc aatgaacatg gctgtgcctt tgggaagtcc
     1681 agtgcctggg ccaggtcgcc actgagatga agctgctgcc acacttgggt gtggcctgca
     1741 caaggttagg ggtgctcagg gtgtctcctc agtgaccagc tgagggaatg cctccatggc
     1801 tgtcactgac aaaaccaaaa ggttacaatg tccctggtcc tagggagcta ggatctccca
     1861 ggagaggcta tgcagagctg acatttgaat gggacctttg aaagcaatga aggcgttgag
     1921 tcgagtcacc gtgtaatgca ccttcatttc attcccaacc aacagtgagc gctggctagt
     1981 cactgcccca gaaccaaagc accttcaagt gcccacacct gaagacaggt gaacagctca
     2041 gcagggacct tccctcttca tggacacaat tagtcctact gtactgggca cccttccaac
     2101 tttacctaat ttaacatctg gagactttga gagctgggta caattaacct ttgtttgcag
     2161 ataaaggaca cagatctttc tcaagagcag caagctctga aagtcagtgc tgttcaaaga
     2221 ctgcaccttc tgttccagtg tcaagcccca ccctccacac tgccagacac atcaggtgtc
     2281 tggacaggcg gcctgggctg gcactcggtt agaatgtagc cctggacctc tagcacccag
     2341 ctggatggca gagccaataa agatatgtgc ac
//
