LOCUS       NM_001414028            1377 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus immediate early response 3 interacting protein 1
            (Ier3ip1), mRNA.
ACCESSION   NM_001414028
VERSION     NM_001414028.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1377)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ222818.1, SRR26360172.16893.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               JAXUCZ010000018.1  72749976-72750125
            151-252             JAXUCZ010000018.1  72759002-72759103
            253-1377            JAXUCZ010000018.1  72759936-72761060
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.3"
     gene            1..1377
                     /gene="Ier3ip1"
                     /note="immediate early response 3 interacting protein 1"
                     /db_xref="GeneID:127566412"
                     /db_xref="RGD:155663513"
     exon            1..150
                     /gene="Ier3ip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..308
                     /gene="Ier3ip1"
                     /codon_start=1
                     /product="immediate early response 3-interacting protein
                     1"
                     /protein_id="NP_001400957.1"
                     /db_xref="GeneID:127566412"
                     /db_xref="RGD:155663513"
                     /translation="MAFTLYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGE
                     EPGIKSQLLNLIRSVRTVMRVPLIIVNSITIVLLLLFG"
     exon            151..252
                     /gene="Ier3ip1"
                     /inference="alignment:Splign:2.1.0"
     exon            253..1377
                     /gene="Ier3ip1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtcccggt cggtgtccgg gaaaaagtca gtcaggcctg ggaacagttt gaagtaacta
       61 tggcctttac gttgtactcc ctgatgcagg cggccctgct gtgcgtgaat gccatcgccg
      121 tgctgcacga ggagcgcttc ctcaagaaca ttggctgggg aacagaccag ggcattggtg
      181 gattcggaga ggagccagga atcaaatctc aactattaaa ccttattcga tctgtaagga
      241 ccgtgatgag agtgccattg ataatagtaa actcaattac tattgtattg cttttgttat
      301 ttggctgaac atcattggga aatcagagac tcagaagaag aaaagcccag aagttcctat
      361 ttttgttgtg actggaatat tggaatattc atgttccagc aggctcatct tgcagttgac
      421 aaaaaaatgt aaagttgaca ataaaaccag agtttctatc tatctgattt tttttttcta
      481 aattgtagtt gcacttgtag ttttgggaca aaagatcagc tcgtcagagg caggagcact
      541 ccaggattgg agcacacttg ttttggttaa gataggtaaa ggctattaaa gggcccagga
      601 ctgctgcctc tgcttcatcc aataaggttc tctcatgatt cagggacggg ttttcttcaa
      661 agttttggaa tactttacca tttaggtaca acctgagagt aattaacttc ctatttaaag
      721 taacagttac agctaactga caaattggta tttgggtaat ttattttgaa ctctttggtt
      781 aactagaata tatcatttct actatgaaga actttataag taactacggg gcagtaccct
      841 gatttcagag agagttctaa ttctgtaaac cagttgtttg ggagctgagg ttttaagttc
      901 tttttatgcc gttgtttact agttgacctg aacagtgagg caggactgtt aacatattct
      961 ccttggtagc aagtcttccc tgtttcacaa ggatttgttt ataaaatcgg tataactgtt
     1021 agttggcgaa atcagccaga gtcacaaacc aacctgctca aatggctgtt cattgtggag
     1081 cattggcctc tccaggcatt ccttggtgca gtagcatgcc ataggtatga gccttagttt
     1141 ctcattctgt tgtcagtaga tcattaatgc taggcagctt cggtttgttt gttttgatgt
     1201 cttaggcaaa ccttgtgggg ttctttcctc atcctataat actgttgttc agttttatat
     1261 aggaagagtt aaactatgtg agtatcatgt gaatgtctgt tacagtcatt tagaggggtg
     1321 ggatggcgtc ctctgtaccc gaccactttt ataaataaag ctgactttcc cacttaa
//
