LOCUS       XM_039084171            3289 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus inducible T-cell co-stimulator (Icos),
            transcript variant X5, mRNA.
ACCESSION   XM_039084171
VERSION     XM_039084171.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086027) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 23, 2024 this sequence was replaced by
            NM_001431817.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3289
                     /gene="Icos"
                     /gene_synonym="Ailim"
                     /note="inducible T-cell co-stimulator; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 87 long SRA reads"
                     /db_xref="GeneID:64545"
                     /db_xref="RGD:620123"
     CDS             291..662
                     /gene="Icos"
                     /gene_synonym="Ailim"
                     /codon_start=1
                     /product="inducible T-cell costimulator isoform X4"
                     /protein_id="XP_038940099.1"
                     /db_xref="GeneID:64545"
                     /db_xref="RGD:620123"
                     /translation="MKPYFSCVFVFCFLIKLLTDNADSSQGSYFLCSLSIFDPPPFQE
                     KNLSGGYLLIYESQLCCQLKLWLPVGCAAFVAALLFGCIFIVWFAKKKYRSSVHDPNS
                     EYMFMAAVNTNKKSRLAGMTS"
     polyA_site      3289
                     /gene="Icos"
                     /gene_synonym="Ailim"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agggtcagtc tgacgaggca ggatagagcc tttcccagga agcctttcac ttcctgccga
       61 tccggaggga agaggatgga gttacaagga ccttctgaca gtcaaacaat ggtcctttga
      121 ggtcacagat aaaataattt ctgagcagag aagttagact tctttcccaa gttcctggac
      181 ctggtaaatg atggagccga ctctagaata aaacagaaaa caactgagaa catgatttca
      241 ctgccacttt tgagcactgg aggggaagag tgcagctgtt cctggcagac atgaagccct
      301 acttctcgtg cgtctttgtc ttctgcttcc taatcaaact tttaacagac aacgcagaca
      361 gctcccaggg cagctacttt ttatgcagcc tgtcgatttt cgacccaccc ccttttcaag
      421 aaaagaacct tagtggagga tatttgctta tttatgaatc ccagctttgt tgccagctga
      481 agctttggtt acccgtaggg tgtgcagctt ttgtggcagc gctccttttt ggatgcatat
      541 ttatcgtctg gtttgcaaaa aagaagtaca gatccagtgt gcacgaccct aatagcgagt
      601 acatgttcat ggcggcagtc aacacaaaca aaaagtccag acttgcaggt atgacctcat
      661 aatctggaac acgggaaccc atggaggaac tacactgtct agttcccctg aaacttgaat
      721 ggagaaagtc ttctattttc tggaccacag ggcatctgac ttgattaact actgatacct
      781 ccttttggtg ttttgtttgt ctggatcagt gactatcagt cactcggaat ttcagcagac
      841 tgccctgggt ttgctgagtc cttttaaggc aaaccccttc ttatagaaga cccggctcat
      901 atgtattcaa caaacagacc tcactgggat acaatcccct ctttctgcgc ctgcttctag
      961 ctatgcaccg gccagcaaga caaacatatc tccagcattt ttacaaaaat gccagggtat
     1021 gaatctgtaa agtacacagg cagccattga ccaccgtctg tcctcgtttt ttcagattct
     1081 atttttttcc atagagatca gcattccttc tagaatcaga cagtagaggg agatgcttca
     1141 caacagaagc tcttatgttt ctgagatgtt gatgaattca tgctttagta ccaccatgtt
     1201 ctctaacaac ttctatattc cagctgatca ctgcttcagg gcttagatgc ctgcttttgc
     1261 cttcaagtct ccccttaaag atactcccac aggtctactt ggtggcctgc agccactctg
     1321 aataggaagt ttggtctaca atttcccccc tctgctgctc aaaaaaaaaa ttagtagata
     1381 tgattttccc atattctccc tgccaaagta attttttcca gcaaagacat ctaaattcag
     1441 ttaatatggt ttactgtgtt gatattagtg gcagtaaaca tttctcagaa tcaaaagcaa
     1501 attaattttg cggtggtgtt tttctaccat tatctgggtt tccatggtgc tattactcac
     1561 aagtttagct atttttatgc atcatattaa agttgcaagc aagcagagca accctcggtt
     1621 aatgggcaaa cattctcctg gggtagaatg aattgtctat ttagcccgaa aactgcagtt
     1681 tctgtgggtg gctgccagac tacagccgtg ctttgctctg gctttgacag gttgaaatag
     1741 tccccatgag cctggaacag tactccagac tgtgctggag tcccaaagtt aggagggcca
     1801 tggagcctgg gacaggctgc tgctttggtc tttaggatct aggaagaatt acagaggggc
     1861 caagacagag ttccctcccc tagaaactgt gcagcctgga agtcagccct ggcactttaa
     1921 gatagccttc tttagaacat gagttagttg gtagtattct gacgtgtaaa cagcctatga
     1981 ttgctcggag ctggaccatt ttctccactt ccctgtctgc atgcctaaga cttctagagc
     2041 agccaacgta tatgcaacat taaagaaaaa aaaagaaaag aaaagaaaca gcaaaaagca
     2101 gacaaacaag ataaacccca aacttaaata aaatagggct gcttcctagt tttaagttat
     2161 agttgcttac tcagtttgct ttacaagtga actgggtatc aacggatact tattacatta
     2221 agcatgtgta atgctggcta tgtacagtac agtactgacc ttaagtatgg tgttctctct
     2281 cttccaatga ctcaggcagc ctggctggct ctgtgagggc atcccctgag ttggatggac
     2341 ctctttgttt agggggtgag ggtactttac tccggtcctt gaaggatccc catcccaaca
     2401 ctgaacacct accaatgaat tcttgaagaa caaaatttct gtgaaataaa atctggctta
     2461 cagaggagcc atgtgctaaa gatgttagca ataataccaa gtcacggcta agcacgagtg
     2521 tgcagcaatg ggatagaacc ttgctgtgtt ttctgggggc gaagaagtga tgaccttagc
     2581 taccacatgc aaattagccc ttgctctccc atgaccttgt gtgctgcata agatagttgc
     2641 tccctttgcc tcgctttccc ccttttaaac tctaaaatag ccacaaactt ataaaagagt
     2701 cagaagcaca ggaaaaagtg tgttctgcgc ctgacttagt ttctgccttg acccccccgg
     2761 ccccacagaa tggtgcctat ttcctatgga aatgaaggct gtattctttg atgacttgac
     2821 agtcaccaat gtcagaaaat tatcgttgat atgtcactat tctctattct ttggtctgca
     2881 ttcaagatct tcccctcggt tctaggatgt ctgtaggagc cgaaggttct gctggagact
     2941 tccccctgtg tttggctgtc cagtctctgg agtattcttc agtctggaca gttctcttca
     3001 gtctgtagtc tgggctcttt gtctgatcgt gggccattgt tttgtagaat gtttcttttg
     3061 ggggggtcac tctgatgttt cttcatgaat gaaatgaagt tatttgtctt tagcagaaat
     3121 aatacagaag tggtgttgcg ccctgtaggg cagctcacat ttcggttcgt caagttactg
     3181 ccaatgtttg ttttcatctc ttgactaagc tcctgtcaag cttctccatt gcgaagtgat
     3241 tctgcccctc cacccccaac agccaataaa tatgctttgt gagaaagta
//
