LOCUS       NM_001398840             950 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus hydroxypyruvate isomerase (Hyi), mRNA.
ACCESSION   NM_001398840 XM_002729532
VERSION     NM_001398840.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Dec 27, 2021 this sequence version replaced XM_002729532.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.20178.1,
                                           SRR26643292.22702.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-232               JAXUCZ010000005.1  137179976-137180207
            233-344             JAXUCZ010000005.1  137180282-137180393
            345-459             JAXUCZ010000005.1  137181546-137181660
            460-538             JAXUCZ010000005.1  137181816-137181894
            539-588             JAXUCZ010000005.1  137181978-137182027
            589-658             JAXUCZ010000005.1  137182122-137182191
            659-793             JAXUCZ010000005.1  137182277-137182411
            794-950             JAXUCZ010000005.1  137182498-137182654
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..950
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /note="hydroxypyruvate isomerase"
                     /db_xref="GeneID:500536"
                     /db_xref="RGD:1561416"
     exon            1..232
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..867
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /EC_number="5.3.1.22"
                     /codon_start=1
                     /product="putative hydroxypyruvate isomerase"
                     /protein_id="NP_001385769.1"
                     /db_xref="GeneID:500536"
                     /db_xref="RGD:1561416"
                     /translation="MAPLRFSANVSWLFPELPGVPERLHAAGRAGFEAAEVAWPYAES
                     PQALASAARAAGLRLVLINTPRGDHEKGEMGLGAVPGRQAAFREGLEQAVLYAKALGC
                     PRIHLMAGRVPRGADREAVKGEMETVFVENLRHAAEVLAQENLVGLLEPINTRITDPQ
                     YFLDTPQQAAAILQKVGRPNLQLQMDIFHWQVMDGNLTGNIREFLPIVGHVQVAQVPD
                     RGEPGSSGELDFTYLFQLLEDEGYQGFVGCEYRPRGDTVEGLSWLRSYWDRWGHPRTG
                     Q"
     exon            233..344
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     exon            345..459
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     exon            460..538
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     exon            539..588
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     exon            589..658
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     exon            659..793
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
     exon            794..950
                     /gene="Hyi"
                     /gene_synonym="RGD1561416"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggccacgc cctcgccacc gccttccgcc ggcatggctc cgctccgctt ctccgccaat
       61 gtctcttggc tgttcccgga gctccccggg gtccccgagc ggctgcatgc cgcgggccgt
      121 gcaggcttcg aagcagccga ggtggcctgg ccgtacgccg agtcacccca ggcgctggcg
      181 agtgcggcgc gggccgcggg actgcggcta gtgctcatca acacgccgcg gggagaccac
      241 gagaaggggg agatggggct gggggctgtc cccgggagac aggcagcctt ccgagagggg
      301 ctggagcagg ctgtgctgta cgccaaggct ctaggctgcc ccaggatcca cctgatggct
      361 ggccgagtac cccgaggggc tgaccgagag gcagtcaagg gtgagatgga gacagtcttt
      421 gtggagaacc tgaggcatgc ggctgaggtt ctggctcagg agaacctcgt gggattgctg
      481 gagcccatta acacgcgcat cacagacccc cagtatttcc tggacactcc ccagcaggcg
      541 gcagccatct tgcagaaggt tgggagaccc aatctgcaat tgcaaatgga catattccac
      601 tggcaggtca tggatgggaa tctgactgga aacatcaggg agttcctgcc catcgttggg
      661 catgtgcaag tggcacaggt cccagaccga ggggagccag gcagctctgg agagctggac
      721 tttacttacc tgttccagct gctagaagat gagggctacc aaggatttgt gggctgcgag
      781 tatcggcctc gaggagacac agtggagggt ctgagctggc tacgttcata ctgggacaga
      841 tggggccacc cacggactgg ccagtaaggt cctgcacagt acctgtatac cgctctgagg
      901 ctagtgtcct gaggtccttc ctctgcatta aaatcacact gagcattttc
//
