LOCUS       XM_039083620            9088 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hyccin PI4KA lipid kinase complex
            subunit 2 (Hycc2), transcript variant X3, mRNA.
ACCESSION   XM_039083620
VERSION     XM_039083620.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083620.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9088
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9088
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /note="hyccin PI4KA lipid kinase complex subunit 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 26 ESTs, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:316415"
                     /db_xref="RGD:1309752"
     CDS             469..2319
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /codon_start=1
                     /product="hyccin 2 isoform X1"
                     /protein_id="XP_038939548.1"
                     /db_xref="GeneID:316415"
                     /db_xref="RGD:1309752"
                     /translation="MLGSERAVVEEWLSEFKALPDTQITSYAATLHRKKALVPALYKV
                     IQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELIWVYLRLTVSRDRQSNGCIE
                     ALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRV
                     VYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQ
                     HEKQWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPL
                     LVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREDGFD
                     FSNEADSSIPGSPIQHGSTDLGIKRVQEGEVLVRRTPEHGSPEPNSAAATTEGRTEMR
                     RQKAVRQLLEKDPGSLSPSRAPLHSSAEGLNGGEESLNMNDADEGFSSGASLSSQPHG
                     TKPSSSSQRGSLRKVATGRSAKDKETASAIKSNESPRDSVVGKQFLQQADLSIDSVEL
                     TPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGGQASTSIGVGTEGVTNLA
                     ATNTNRYSTISLQEDRLGHAGEGKELLSPGAPLTKQSRSPSFNMQLISQV"
ORIGIN      
        1 cactcaatga gaaggctggt tgttatgctg cagttggcag gctgctgcgg gaggcggtgg
       61 cggtaggaag cctgaggctg cggggtgaca ggagatgagc tatccagaga atttttagga
      121 taaaaagaac tgcttggaga actggcacac cagcaagccg gatgtggaca gagagatttc
      181 ttagaagagc aagcaagcag aatatagaca gacaaatatc cagagagaag cagactggaa
      241 aagcagaaca ggtggtcagc atgtacccac agtttgactt ccactcccag acaccccttt
      301 tctcggaact cctctgcatg ctgaggcagc tgcttggcag agttggaaaa tatttaactc
      361 tcaacaaatg aattccacac ttgaactctg ctgtattcct gtgccacctc ctcctttaga
      421 gaactgatct taagacagag ataaaagaag actagaaggt aaaggaagat gctgggatca
      481 gaaagagctg ttgtagaaga atggttatca gaattcaagg cattacctga cactcagatt
      541 accagttatg cagcaacctt gcaccggaaa aaagcccttg tgccagctct ctataaagtt
      601 attcaagact caaacaatga gctcctggag cctgtctgcc accaactgtt tgagctctat
      661 cgtagctctg aggttcgact taagaggttc actctgcagt tcctgcctga attgatttgg
      721 gtttatttgc gacttacagt tagtagagac aggcagagca atggctgtat tgaagcactt
      781 ctcctaggaa tttataattt ggaaattgct gataaagatg gaaacaataa agtgctgtct
      841 ttcacgatcc cttccttatc taagccttca atataccatg aaccctctac aattggatcc
      901 atggctttga cagaaggggc attatgtcag catgacctca tcagggttgt ttacagtgat
      961 cttcatcctc agagagaaac attcactgca caaaaccggt tcgaagtcct gagttttctc
     1021 atgctgtgct ataattcagc tattgtgtat atgcctgcat catcttacca atctctttgt
     1081 cgaatgggtt caagggtttg tgtgagtggg tttccacgac aacatgagaa acagtggaag
     1141 gaactttgtg gtcgaatcgt attagatcct gaatttatgg tgcaacttct cacaggagtt
     1201 tactatgcta tgtataatgg acagtgggac cttggccagg aagtacttga tgacatcatt
     1261 tatagagctc agctagaact cttttctcag ccactcttgg tggcaaatgc catgaaaaac
     1321 tcattaccat ttgatgcacc tgattcttca caagaaggcc agaaagtact taaagtggaa
     1381 gtcactccaa cagtgccgag aatctctcgg actgcaatta caacagcttc aattcgtcgt
     1441 catagatgga gaagagaaga tggctttgac ttctcaaacg aggctgactc gagtattcct
     1501 ggctccccga tccaacacgg ctccactgac ctagggatca aacgtgtgca agagggggag
     1561 gtgctggtgc gcaggacccc tgagcatggc tcgccggagc ccaactcagc agcagccaca
     1621 acagagggta ggacagagat gaggaggcag aaggcagtga ggcagttgct ggagaaggat
     1681 cctggctctc tgtccccaag cagagcacct ttacattcta gtgctgaggg tctaaatgga
     1741 ggagaggagt ccttaaacat gaatgatgca gatgaaggat tttcatcggg ggcttctctc
     1801 agcagccaac cacatgggac caaaccatcc tcctcttctc agaggggaag cttacggaaa
     1861 gtagcaactg ggcgttccgc caaagacaaa gaaacagcat cagccatcaa gtccaacgag
     1921 agccctcgag attcagtagt tgggaagcag tttctacaac aagcagatct cagcatagat
     1981 tcagttgagc tgacaccgat gaagaaacac ttgagcctgc ctgcaggcca ggtggtgcca
     2041 aaaaccaata gtctaagcct aatccggaca gccagtgctt cctcaagtaa atcttttgac
     2101 tatgtaaatg gtggtcaagc aagtaccagc attggggttg gcactgaggg agttactaac
     2161 ctagcagcta caaatactaa tagatactca actatcagtc tacaagaaga ccggctaggt
     2221 catgctggtg aaggtaaaga gctcctcagc ccaggagccc ccttaaccaa gcagtctcga
     2281 tccccaagtt tcaatatgca gctaatatcc caggtgtagt tctggtgtcc ccttgttctg
     2341 cttcccttct acactgaaca tttcattgtg caagacacgt catcccgcat tgtgaaaaag
     2401 atgtcactgt catcagattt gacttagctt aggtatctca tactgtattt tgtatggaaa
     2461 cagcaataag gttttccttt cctttcttta acctctcacc tattccctta aatgtgtttg
     2521 tgaagcagtg taaaatgttt gcctttccct gccttccttt ctcttgggtg atgtgcaatc
     2581 catcgtaggc tgatcggtcc catttcaaca ctgtgagact gaggagatgt tagaggaaat
     2641 ggtgtatagg atccctatga agtgactctt tggcttttgt ttaaaaacaa aacgggtttg
     2701 ttcacataat ctatggaact atgaagataa ctggatcata tttttttctc ttaaccagga
     2761 gtgcctcaga gattctgcta tgactttggg ctttctctga gtctgtgcaa ttttatattc
     2821 ttgggtagca tgggggaagg cggtagacta ctgcaatttt ttttattaaa atgaggctga
     2881 ctgccccctt attttatccc aaggacacaa atatttaatt attgaggcat ttaaatcaat
     2941 ttgtgaccac ctccattgga gggtgtggct ctaagttgat tctctaattg ataatgcact
     3001 ttctcaatgg ctctatagtc attaacaaca ggtcttccct cttcccacaa ggacttaagg
     3061 acatttccgc ccttaaagtt tgaattaaca aatcagagac tcaaaggggc atgttctatt
     3121 tcctaggaat gattgatatt atggtgctgg ggttttgttg ggggaagggt gtttgtttaa
     3181 tttgtgtgag attgtatatg aggtaaagct ataattgttt tctttcttcc tttcctttgt
     3241 gagttggtga tgactgaagt agaaactgta catcttcagg taaagagagg aatttctcag
     3301 tctactctct gagatatcag actagagaaa ccctttcagc tgcttcctag atgtacctag
     3361 attcagtcag atattggata cagaaaccta aagtcctgag attatatact ccaaggaaat
     3421 acatcaggga cagataattg gttgaaaaca ctgatgcttc aatgtgacac atttgtatag
     3481 aacatttcta ccagagggta ctgacttgat ttctccacaa ggaccacact gcctttgtgt
     3541 ttattgcagt ttgtgtatct tctgattatc tgcaaagttt ctcgttttta taaaactttg
     3601 aaatcatgcc agtaaactag atgttgaatg taaatcagta gcatttggta actgctaaga
     3661 ggctacaaaa atgcattatt agtttaaagg ctctttgttg tgatttggtt ggataagact
     3721 ttcttataat ctcttctggg tctcaggctt tgtttgaaaa agaagggaat atattagaat
     3781 tttaaaaatc agtattgtga cttcaattgc tatgaattac ccatctcaaa aacatcagtt
     3841 acacacactc tcttacatgt agacatttta tggtattgtg aatggaaatt atactgcctt
     3901 tataggaagc aagtgttctc ctaattgaca aagttgtttt atctctattt accataaagt
     3961 ttgataaata accaggaaaa cgactctcat tttttttcac acataagcca ccatttttgg
     4021 aagagtagtc tgtctgtcta ttagtttagg gagcattgtg ttagtataac ctttaattag
     4081 atttgatagt ttgtaacatt tttcagctcc cagcaaatag aaaactagaa cctcagctat
     4141 tatccatatc attgccaaag tttggagtaa ggctaaaagc tgatatgtga tctattgatt
     4201 gattataata tgcatatgac atgtctattt atcacagaca tattttagcc ctatttctac
     4261 taatttaagt aattaagaga taccaagtaa actaaaaaaa acagagttgt aaaacagtaa
     4321 aaaaaaatag tgaaaatgtt tttgtaacct actaaatgga gaagctttct agtgcataaa
     4381 ggaaggtatc agtcttatac agcaaaacat gcctacttta tgctggaggt cgctgggctc
     4441 aagtgcacac agattgacat ttaaaccaag cgttttagat aaagcacaaa agaataccaa
     4501 acaatttgaa agtatagcat aaactgttgt aagtataaga aaacatcctt tgattagaac
     4561 tgttataact gaagggttgg ttttaagata tttttcagaa tcaggaatga tggcacacac
     4621 ctttaatccc agcactccaa aggcagaggc aggtggatct ctgagttcaa ggctggcttg
     4681 gtctacagag tgagttctaa gacagccaga gctacacaga gaaggaagcc ctgtctcaga
     4741 gaagaaaaag aaaaaaagtt tttttttcat cttaaaggat atcttttatc ggtatttcgt
     4801 agactttgta tatacatccc aagtaatatt tcacaaccct gtaacatttg cttcctattc
     4861 cttgggttat aatttggtct cagtgaagaa attcttcata tacactttat aaccagggtc
     4921 ttagaataca ttttctgtat aaaataacag ttaaaatgaa attaattaaa attaaacaaa
     4981 ctatccaatt ttctaatgat attttcaacc attttgtgtt accagcattg aatttaaaat
     5041 gatttttgta aagttactca gcagctgtta gaaatgtcat agaaagtcag aaatgtccgt
     5101 actttatcct ttaacaaatt ccctttaata tttctccact ttcatgaagc atcatcacac
     5161 taatagaaaa aggacatttt ggggaaaata tttgttttat ataattcaaa aaatgaccga
     5221 tgccatctgc actgggttaa ggactacaat atctgaaggt ttgaagagtt cttctatatg
     5281 actttcagtt acttttactg gtaagaaagc taaaatataa agtaaaaact taacttagaa
     5341 gctggggagg gaagagttgt cttttaaaat cttggtcctt taccaacatc ccttttttcc
     5401 cagcccactg ttgtgtgccc atttattgca gatcaggatt tctgtgctag aagagaccct
     5461 agaaataact tggctcttct ctctgccaca catgcattca tcatcagggc actgaggctc
     5521 agcagaggtt gtagactaag taaggcccat ggctaagaag ctgggccata gtcaaacctt
     5581 gtctctagtc ccgttcatgt tgatgcctct ttgcctctag ttatccagac tttggtaaat
     5641 gtgatatgaa acacttccat ttctgctgtt tctttgtttc tgccccagta cctgatgaac
     5701 acattaagaa agatattaat tccagaggga aaaaaagtaa aataattaat acagatgggg
     5761 atgtgttcaa aatgcacatt attcttttct aatttatgcc ttgtgaattt tctaccacat
     5821 aacagttata tgctgccagg ttatttgtat ttctggggat ttgtttaaat gcaaaataaa
     5881 cccaatgaaa tttccttgat cagtgtttct aactatttaa aagctatact gcggaggatt
     5941 gcaaagtaaa gataaagctc agttccatta atttttaatc tagagagaga atgttcctta
     6001 ctgtgcttag agaagattaa gagcaatatt cctcaatgtg attgaagaga tttacagtga
     6061 gtgtaaatgt atgagtccat gagcagtggt ctctgtcatt ataacataaa ccgtataaaa
     6121 tgactcaagg gtggtagtct tagccacaga gtgcagtgtc tccaaccggt agtctcatcc
     6181 cacttagtag cttttaaatt tgttagaaga gctctctcgt gctgtgtttg tttgcactgc
     6241 ttctgtgaat acgtcaatgc agtggttttc ctacctccct tatgaggttt ctttgggtcc
     6301 atcttaagta cttcagttgt tgacaatcag atgtctcatt taatttacta tatattcatt
     6361 tataaatgaa agtactagtt tctgtctttg tgggtaaggt aacgtactgt accaacattg
     6421 agaagggaga ccactccatt tctgaacttg gattgcatta taaagtatgg gtttttttaa
     6481 tttaacaaaa agacttagta ttctaattat atagtttttt aatttaaaaa gactaatatg
     6541 tcatgctagt gatcagaaat tctacagaaa tcctagagca acttttctgc actggttata
     6601 ttaagcattg agacaggagg ctttccccaa gctggatgac tcctgtcact gcttcaccac
     6661 tgagttggtg agatgctgta atacttttaa ttttcccaaa gtggtctcca aaataagtga
     6721 ttgaaaacta gctattggtg gcactttaac ctcttaaaaa tatttaccag attatataaa
     6781 catgggatac agtgtaaaaa tagcatcatg agtcatcaga ttggtacagt tttccatgca
     6841 aaggagatga gccaaattct agtattgttt ctattgtgtg aacctagtgg gcggttcaca
     6901 cgtgtggaac tactgcggag gcacaacccc gcctcttgtc cttgaggtag ctgcattcca
     6961 tctgaccctg acagcatctc ttttcctcca acatttttgt aatgttagcc atttgtccta
     7021 tgagaaatat ggtcaagacc aaacaattca ggatacagtt tcacagaaat gtagggttgt
     7081 gtggaataac tggccgaagg ccacagaagt aaactttcta tgttttgctt ctgaatttca
     7141 aaaggatggg tttcttaatg tttacaaatt aaggcacatt tgtatgtctg atattaatta
     7201 gactactaca ttttaatatg gttttaccaa aagaaagtag aattaggtgt attttaagat
     7261 ataagccagt cttttttaaa acttgagcat ctggaggtag gtgtttttat tgacaaagaa
     7321 aaatgaactt aattggataa tctctcccca tctgctactt tgctatatgg cttgctgtat
     7381 tggagtgtaa acagttcagt gttaatcata tcagaagaca tttttacatc ctcatcaatt
     7441 tataaaattt accaaagaaa atgtttctga taaatccttt ttaaagcatt aaggaatgta
     7501 cccctctttg atgtagtgat tgctttctaa ccctgaggga aacaaatatt aatatattat
     7561 ttgaactaaa aaacacatag ggtaaataga caatgtcctg tttttcccta catcagtaag
     7621 atgtcagtac tccactgaaa gtaccattta aagaataagt cttaatttta ttccttagga
     7681 catttttatt aaaattaagg attttgcgta tcagtattga atataaaggg ggaaactcct
     7741 gaagatggta tattgtatat tatgggttgt ctagggaaaa ttattgaaag gtacccctca
     7801 atggacagtg gcatttattt ctagtataat cgtagctaaa ttgacatggt taggttagtt
     7861 tgcatttatg tctgtgttca ctcttgacta ctttttgtct ttgcatatga ttgggttaaa
     7921 ggaagccaaa ataactgctt taaaatatgt cggccaaaaa gatctaaagg gtttaagctg
     7981 tttaatgatc tcttaaataa cgaattatag ttgtttttta actatttcga acaagttctt
     8041 taatttttta ataccacatt atagttaata agtacttaac tggtgtgtgg tggtacatgc
     8101 ctgtaatccc agcacttgga ggcagaggta gactgatctc tgagttcaag gccaggctgg
     8161 tctatagagt gagttccagg acagccaagg ctacacagtt agaccctgtc tcaaaacaac
     8221 agacagacag acagacagac aaacaaaaat gtattgttct tgggaaaaga agattggcct
     8281 tcaaataatg actgataatg gtttttattt ttaattttat tatctgaata cagtataaag
     8341 atatgttctg tgtgatgtta aaaatattag tatgaggttt atcgtgtatt ttacactgga
     8401 tctttttggt tcttctaaaa actaggctgg ctttacattc agtttaaaac tggttaaatg
     8461 aaaatgttta gcagtgcacg gattttacta ccttggcttt atgtaatgtg atttctataa
     8521 tagcaaacag aatatcccat tctgattatt tgtttcctaa gaaggatata tttgatcagc
     8581 ctgttcttat tgtcagccaa tatcaatgtg tagcttggga taaatgtccc aggtattgag
     8641 aggattctgc tgctgaaaat tctgccggcg tgtacaaagt atgatcttta ttgagagatg
     8701 tcctttcaac ttgggactag tgaaaaatct ttctttcttt tgtttcagag ctgaagaaaa
     8761 aaaccaaaat gcacatttaa gatcatatgt actggtgcat gtgagccgtt atcttgtctt
     8821 attgaatgga ctaatgctgt tgattgttga aatgtgaaat gtgtcactgt tgaacttgta
     8881 catatctgcc agagatgaaa aatattttaa gttattgtaa ataaagatgt ataaaattga
     8941 gtatccgtct gcaatgcaga aacataacat ctcagatgtt aaatatgtct cttgagggat
     9001 atgtcatgtc tccctgatgt atctagctac ataaggaatg tacattttct tttgtataaa
     9061 atacagcttc atttggcttt taactgga
//
