LOCUS       NM_001025710            8583 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus hyccin PI4KA lipid kinase complex subunit 2
            (Hycc2), mRNA.
ACCESSION   NM_001025710 XM_006244985 XM_237184
VERSION     NM_001025710.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 8583)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 8583)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Apr 2, 2021 this sequence version replaced
            XM_006244985.4, NM_001025710.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.37677.1,
                                           SRR26643287.22648.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                JAXUCZ010000009.1  67623236-67623297   c
            63-160              JAXUCZ010000009.1  67597666-67597763   c
            161-194             JAXUCZ010000009.1  67591842-67591875   c
            195-275             JAXUCZ010000009.1  67587103-67587183   c
            276-377             JAXUCZ010000009.1  67586391-67586492   c
            378-557             JAXUCZ010000009.1  67581356-67581535   c
            558-638             JAXUCZ010000009.1  67577681-67577761   c
            639-754             JAXUCZ010000009.1  67575847-67575962   c
            755-850             JAXUCZ010000009.1  67573499-67573594   c
            851-967             JAXUCZ010000009.1  67568622-67568738   c
            968-1055            JAXUCZ010000009.1  67568055-67568142   c
            1056-1215           JAXUCZ010000009.1  67563943-67564102   c
            1216-8583           JAXUCZ010000009.1  67551064-67558431   c
FEATURES             Location/Qualifiers
     source          1..8583
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q31"
     gene            1..8583
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /note="hyccin PI4KA lipid kinase complex subunit 2"
                     /db_xref="GeneID:316415"
                     /db_xref="RGD:1309752"
     exon            1..62
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            63..160
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            161..194
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            195..275
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     CDS             225..1814
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /note="family with sequence similarity 126, member B"
                     /codon_start=1
                     /product="hyccin 2"
                     /protein_id="NP_001020881.2"
                     /db_xref="GeneID:316415"
                     /db_xref="RGD:1309752"
                     /translation="MLGSERAVVEEWLSEFKALPDTQITSYAATLHRKKALVPALYKV
                     IQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELIWVYLRLTVSRDRQSNGCIE
                     ALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRV
                     VYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQ
                     HEKQWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPL
                     LVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEG
                     LNGGEESLNMNDADEGFSSGASLSSQPHGTKPSSSSQRGSLRKVATGRSAKDKETASA
                     IKSNESPRDSVVGKQFLQQADLSIDSVELTPMKKHLSLPAGQVVPKTNSLSLIRTASA
                     SSSKSFDYVNGGQASTSIGVGTEGVTNLAATNTNRYSTISLQEDRLGHAGEGKELLSP
                     GAPLTKQSRSPSFNMQLISQV"
     exon            276..377
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            378..557
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            558..638
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            639..754
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            755..850
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            851..967
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1055
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1215
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..8583
                     /gene="Hycc2"
                     /gene_synonym="Fam126b; RGD1309752"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagttggca ggctgctgcg ggaggcggtg gcggtaggaa gcctgaggct gcggggtgac
       61 agagttggaa aatatttaac tctcaacaaa tgaattccac acttgaactc tgctgtattc
      121 ctgtgccacc tcctccttta gagaactgat cttaagacag ctggggaccg aacccagggc
      181 cttgcgcttc ctagagataa aagaagacta gaaggtaaag gaagatgctg ggatcagaaa
      241 gagctgttgt agaagaatgg ttatcagaat tcaaggcatt acctgacact cagattacca
      301 gttatgcagc aaccttgcac cggaaaaaag cccttgtgcc agctctctat aaagttattc
      361 aagactcaaa caatgagctc ctggagcctg tctgccacca actgtttgag ctctatcgta
      421 gctctgaggt tcgacttaag aggttcactc tgcagttcct gcctgaattg atttgggttt
      481 atttgcgact tacagttagt agagacaggc agagcaatgg ctgtattgaa gcacttctcc
      541 taggaattta taatttggaa attgctgata aagatggaaa caataaagtg ctgtctttca
      601 cgatcccttc cttatctaag ccttcaatat accatgaacc ctctacaatt ggatccatgg
      661 ctttgacaga aggggcatta tgtcagcatg acctcatcag ggttgtttac agtgatcttc
      721 atcctcagag agaaacattc actgcacaaa accggttcga agtcctgagt tttctcatgc
      781 tgtgctataa ttcagctatt gtgtatatgc ctgcatcatc ttaccaatct ctttgtcgaa
      841 tgggttcaag ggtttgtgtg agtgggtttc cacgacaaca tgagaaacag tggaaggaac
      901 tttgtggtcg aatcgtatta gatcctgaat ttatggtgca acttctcaca ggagtttact
      961 atgctatgta taatggacag tgggaccttg gccaggaagt acttgatgac atcatttata
     1021 gagctcagct agaactcttt tctcagccac tcttggtggc aaatgccatg aaaaactcat
     1081 taccatttga tgcacctgat tcttcacaag aaggccagaa agtacttaaa gtggaagtca
     1141 ctccaacagt gccgagaatc tctcggactg caattacaac agcttcaatt cgtcgtcata
     1201 gatggagaag agaaggtgct gagggtctaa atggaggaga ggagtcctta aacatgaatg
     1261 atgcagatga aggattttca tcgggggctt ctctcagcag ccaaccacat gggaccaaac
     1321 catcctcctc ttctcagagg ggaagcttac ggaaagtagc aactgggcgt tccgccaaag
     1381 acaaagaaac agcatcagcc atcaagtcca acgagagccc tcgagattca gtagttggga
     1441 agcagtttct acaacaagca gatctcagca tagattcagt tgagctgaca ccgatgaaga
     1501 aacacttgag cctgcctgca ggccaggtgg tgccaaaaac caatagtcta agcctaatcc
     1561 ggacagccag tgcttcctca agtaaatctt ttgactatgt aaatggtggt caagcaagta
     1621 ccagcattgg ggttggcact gagggagtta ctaacctagc agctacaaat actaatagat
     1681 actcaactat cagtctacaa gaagaccggc taggtcatgc tggtgaaggt aaagagctcc
     1741 tcagcccagg agccccctta accaagcagt ctcgatcccc aagtttcaat atgcagctaa
     1801 tatcccaggt gtagttctgg tgtccccttg ttctgcttcc cttctacact gaacatttca
     1861 ttgtgcaaga cacgtcatcc cgcattgtga aaaagatgtc actgtcatca gatttgactt
     1921 agcttaggta tctcatactg tattttgtat ggaaacagca ataaggtttt cctttccttt
     1981 ctttaacctc tcacctattc ccttaaatgt gtttgtgaag cagtgtaaaa tgtttgcctt
     2041 tccctgcctt cctttctctt gggtgatgtg caatccatcg taggctgatc ggtcccattt
     2101 caacactgtg agactgagga gatgttagag gaaatggtgt ataggatccc tatgaagtga
     2161 ctctttggct tttgtttaaa aacaaaacgg gtttgttcac ataatctatg gaactatgaa
     2221 gataactgga tcatattttt ttctcttaac caggagtgcc tcagagattc tgctatgact
     2281 ttgggctttc tctgagtctg tgcaatttta tattcttggg tagcatgggg gaaggcggta
     2341 gactactgca atttttttta ttaaaatgag gctgactgcc cccttatttt atcccaagga
     2401 cacaaatatt taattattga ggcatttaaa tcaatttgtg accacctcca ttggagggtg
     2461 tggctctaag ttgattctct aattgataat gcactttctc aatggctcta tagtcattaa
     2521 caacaggtct tccctcttcc cacaaggact taaggacatt tccgccctta aagtttgaat
     2581 taacaaatca gagactcaaa ggggcatgtt ctatttccta ggaatgattg atattatggt
     2641 gctggggttt tgttggggga agggtgtttg tttaatttgt gtgagattgt atatgaggta
     2701 aagctataat tgttttcttt cttcctttcc tttgtgagtt ggtgatgact gaagtagaaa
     2761 ctgtacatct tcaggtaaag agaggaattt ctcagtctac tctctgagat atcagactag
     2821 agaaaccctt tcagctgctt cctagatgta cctagattca gtcagatatt ggatacagaa
     2881 acctaaagtc ctgagattat atactccaag gaaatacatc agggacagat aattggttga
     2941 aaacactgat gcttcaatgt gacacatttg tatagaacat ttctaccaga gggtactgac
     3001 ttgatttctc cacaaggacc acactgcctt tgtgtttatt gcagtttgtg tatcttctga
     3061 ttatctgcaa agtttctcgt ttttataaaa ctttgaaatc atgccagtaa actagatgtt
     3121 gaatgtaaat cagtagcatt tggtaactgc taagaggcta caaaaatgca ttattagttt
     3181 aaaggctctt tgttgtgatt tggttggata agactttctt ataatctctt ctgggtctca
     3241 ggctttgttt gaaaaagaag ggaatatatt agaattttaa aaatcagtat tgtgacttca
     3301 attgctatga attacccatc tcaaaaacat cagttacaca cactctctta catgtagaca
     3361 ttttatggta ttgtgaatgg aaattatact gcctttatag gaagcaagtg ttctcctaat
     3421 tgacaaagtt gttttatctc tatttaccat aaagtttgat aaataaccag gaaaacgact
     3481 ctcatttttt ttcacacata agccaccatt tttggaagag tagtctgtct gtctattagt
     3541 ttagggagca ttgtgttagt ataaccttta attagatttg atagtttgta acatttttca
     3601 gctcccagca aatagaaaac tagaacctca gctattatcc atatcattgc caaagtttgg
     3661 agtaaggcta aaagctgata tgtgatctat tgattgatta taatatgcat atgacatgtc
     3721 tatttatcac agacatattt tagccctatt tctactaatt taagtaatta agagatacca
     3781 agtaaactaa aaaaaacaga gttgtaaaac agtaaaaaaa aatagtgaaa atgtttttgt
     3841 aacctactaa atggagaagc tttctagtgc ataaaggaag gtatcagtct tatacagcaa
     3901 aacatgccta ctttatgctg gaggtcgctg ggctcaagtg cacacagatt gacatttaaa
     3961 ccaagcgttt tagataaagc acaaaagaat accaaacaat ttgaaagtat agcataaact
     4021 gttgtaagta taagaaaaca tcctttgatt agaactgtta taactgaagg gttggtttta
     4081 agatattttt cagaatcagg aatgatggca cacaccttta atcccagcac tccaaaggca
     4141 gaggcaggtg gatctctgag ttcaaggctg gcttggtcta cagagtgagt tctaagacag
     4201 ccagagctac acagagaagg aagccctgtc tcagagaaga aaaagaaaaa aagttttttt
     4261 ttcatcttaa aggatatctt ttatcggtat ttcgtagact ttgtatatac atcccaagta
     4321 atatttcaca accctgtaac atttgcttcc tattccttgg gttataattt ggtctcagtg
     4381 aagaaattct tcatatacac tttataacca gggtcttaga atacattttc tgtataaaat
     4441 aacagttaaa atgaaattaa ttaaaattaa acaaactatc caattttcta atgatatttt
     4501 caaccatttt gtgttaccag cattgaattt aaaatgattt ttgtaaagtt actcagcagc
     4561 tgttagaaat gtcatagaaa gtcagaaatg tccgtacttt atcctttaac aaattccctt
     4621 taatatttct ccactttcat gaagcatcat cacactaata gaaaaaggac attttgggga
     4681 aaatatttgt tttatataat tcaaaaaatg accgatgcca tctgcactgg gttaaggact
     4741 acaatatctg aaggtttgaa gagttcttct atatgacttt cagttacttt tactggtaag
     4801 aaagctaaaa tataaagtaa aaacttaact tagaagctgg ggagggaaga gttgtctttt
     4861 aaaatcttgg tcctttacca acatcccttt tttcccagcc cactgttgtg tgcccattta
     4921 ttgcagatca ggatttctgt gctagaagag accctagaaa taacttggct cttctctctg
     4981 ccacacatgc attcatcatc agggcactga ggctcagcag aggttgtaga ctaagtaagg
     5041 cccatggcta agaagctggg ccatagtcaa accttgtctc tagtcccgtt catgttgatg
     5101 cctctttgcc tctagttatc cagactttgg taaatgtgat atgaaacact tccatttctg
     5161 ctgtttcttt gtttctgccc cagtacctga tgaacacatt aagaaagata ttaattccag
     5221 agggaaaaaa agtaaaataa ttaatacaga tggggatgtg ttcaaaatgc acattattct
     5281 tttctaattt atgccttgtg aattttctac cacataacag ttatatgctg ccaggttatt
     5341 tgtatttctg gggatttgtt taaatgcaaa ataaacccaa tgaaatttcc ttgatcagtg
     5401 tttctaacta tttaaaagct atactgcgga ggattgcaaa gtaaagataa agctcagttc
     5461 cattaatttt taatctagag agagaatgtt ccttactgtg cttagagaag attaagagca
     5521 atattcctca atgtgattga agagatttac agtgagtgta aatgtatgag tccatgagca
     5581 gtggtctctg tcattataac ataaaccgta taaaatgact caagggtggt agtcttagcc
     5641 acagagtgca gtgtctccaa ccggtagtct catcccactt agtagctttt aaatttgtta
     5701 gaagagctct ctcgtgctgt gtttgtttgc actgcttctg tgaatacgtc aatgcagtgg
     5761 ttttcctacc tcccttatga ggtttctttg ggtccatctt aagtacttca gttgttgaca
     5821 atcagatgtc tcatttaatt tactatatat tcatttataa atgaaagtac tagtttctgt
     5881 ctttgtgggt aaggtaacgt actgtaccaa cattgagaag ggagaccact ccatttctga
     5941 acttggattg cattataaag tatgggtttt tttaatttaa caaaaagact tagtattcta
     6001 attatatagt tttttaattt aaaaagacta atatgtcatg ctagtgatca gaaattctac
     6061 agaaatccta gagcaacttt tctgcactgg ttatattaag cattgagaca ggaggctttc
     6121 cccaagctgg atgactcctg tcactgcttc accactgagt tggtgagatg ctgtaatact
     6181 tttaattttc ccaaagtggt ctccaaaata agtgattgaa aactagctat tggtggcact
     6241 ttaacctctt aaaaatattt accagattat ataaacatgg gatacagtgt aaaaatagca
     6301 tcatgagtca tcagattggt acagttttcc atgcaaagga gatgagccaa attctagtat
     6361 tgtttctatt gtgtgaacct agtgggcggt tcacacgtgt ggaactactg cggaggcaca
     6421 accccgcctc ttgtccttga ggtagctgca ttccatctga ccctgacagc atctcttttc
     6481 ctccaacatt tttgtaatgt tagccatttg tcctatgaga aatatggtca agaccaaaca
     6541 attcaggata cagtttcaca gaaatgtagg gttgtgtgga ataactggcc gaaggccaca
     6601 gaagtaaact ttctatgttt tgcttctgaa tttcaaaagg atgggtttct taatgtttac
     6661 aaattaaggc acatttgtat gtctgatatt aattagacta ctacatttta atatggtttt
     6721 accaaaagaa agtagaatta ggtgtatttt aagatataag ccagtctttt ttaaaacttg
     6781 agcatctgga ggtaggtgtt tttattgaca aagaaaaatg aacttaattg gataatctct
     6841 ccccatctgc tactttgcta tatggcttgc tgtattggag tgtaaacagt tcagtgttaa
     6901 tcatatcaga agacattttt acatcctcat caatttataa aatttaccaa agaaaatgtt
     6961 tctgataaat cctttttaaa gcattaagga atgtacccct ctttgatgta gtgattgctt
     7021 tctaaccctg agggaaacaa atattaatat attatttgaa ctaaaaaaca catagggtaa
     7081 atagacaatg tcctgttttt ccctacatca gtaagatgtc agtactccac tgaaagtacc
     7141 atttaaagaa taagtcttaa ttttattcct taggacattt ttattaaaat taaggatttt
     7201 gcgtatcagt attgaatata aagggggaaa ctcctgaaga tggtatattg tatattatgg
     7261 gttgtctagg gaaaattatt gaaaggtacc cctcaatgga cagtggcatt tatttctagt
     7321 ataatcgtag ctaaattgac atggttaggt tagtttgcat ttatgtctgt gttcactctt
     7381 gactactttt tgtctttgca tatgattggg ttaaaggaag ccaaaataac tgctttaaaa
     7441 tatgtcggcc aaaaagatct aaagggttta agctgtttaa tgatctctta aataacgaat
     7501 tatagttgtt ttttaactat ttcgaacaag ttctttaatt ttttaatacc acattatagt
     7561 taataagtac ttaactggtg tgtggtggta catgcctgta atcccagcac ttggaggcag
     7621 aggtagactg atctctgagt tcaaggccag gctggtctat agagtgagtt ccaggacagc
     7681 caaggctaca cagttagacc ctgtctcaaa acaacagaca gacagacaga cagacaaaca
     7741 aaaatgtatt gttcttggga aaagaagatt ggccttcaaa taatgactga taatggtttt
     7801 tatttttaat tttattatct gaatacagta taaagatatg ttctgtgtga tgttaaaaat
     7861 attagtatga ggtttatcgt gtattttaca ctggatcttt ttggttcttc taaaaactag
     7921 gctggcttta cattcagttt aaaactggtt aaatgaaaat gtttagcagt gcacggattt
     7981 tactaccttg gctttatgta atgtgatttc tataatagca aacagaatat cccattctga
     8041 ttatttgttt cctaagaagg atatatttga tcagcctgtt cttattgtca gccaatatca
     8101 atgtgtagct tgggataaat gtcccaggta ttgagaggat tctgctgctg aaaattctgc
     8161 cggcgtgtac aaagtatgat ctttattgag agatgtcctt tcaacttggg actagtgaaa
     8221 aatctttctt tcttttgttt cagagctgaa gaaaaaaacc aaaatgcaca tttaagatca
     8281 tatgtactgg tgcatgtgag ccgttatctt gtcttattga atggactaat gctgttgatt
     8341 gttgaaatgt gaaatgtgtc actgttgaac ttgtacatat ctgccagaga tgaaaaatat
     8401 tttaagttat tgtaaataaa gatgtataaa attgagtatc cgtctgcaat gcagaaacat
     8461 aacatctcag atgttaaata tgtctcttga gggatatgtc atgtctccct gatgtatcta
     8521 gctacataag gaatgtacat tttcttttgt ataaaataca gcttcatttg gcttttaact
     8581 gga
//
