LOCUS       XM_017593608            4161 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 5-hydroxytryptamine receptor 6 (Htr6),
            transcript variant X1, mRNA.
ACCESSION   XM_017593608
VERSION     XM_017593608.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017593608.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4161
                     /gene="Htr6"
                     /note="5-hydroxytryptamine receptor 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 1 EST, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:64354"
                     /db_xref="RGD:62044"
     CDS             1162..2478
                     /gene="Htr6"
                     /codon_start=1
                     /product="5-hydroxytryptamine receptor 6 isoform X1"
                     /protein_id="XP_017449097.1"
                     /db_xref="GeneID:64354"
                     /db_xref="RGD:62044"
                     /translation="MVPEPGPVNSSTPAWGPGPPPAPGGSGWVAAALCVVIVLTAAAN
                     SLLIVLICTQPALRNTSNFFLVSLFTSDLMVGLVVMPPAMLNALYGRWVLARGLCLLW
                     TAFDVMCCSASILNLCLISLDRYLLILSPLRYKLRMTAPRALALILGAWSLAALASFL
                     PLLLGWHELGKARTPAPGQCRLLASLPFVLVASGVTFFLPSGAICFTYCRILLAARKQ
                     AVQVASLTTGTAGQALETLQVPRTPRPGMESADSRRLATKHSRKALKASLTLGILLGM
                     FFVTWLPFFVANIAQAVCDCISPGLFDVLTWLGYCNSTMNPIIYPLFMRDFKRALGRF
                     LPCVHCPPEHRASPASPSMWTSHSGARPGLSLQQVLPLPLPPNSDSDSASGGTSGLQL
                     TAQLLLPGEATRDPPPPTRATTVVNFFVTDSVEPEIRPHPLSSPVN"
ORIGIN      
        1 ggagtgccaa caggtcaggg acggggacct tcaccaaaat cactcagtgt tgttggagaa
       61 cggatggggg gaactcaaag gtgaagagtg gcagaaatta tttacccatt gtatagatcc
      121 agaaactgag gctcagaagg ctctctaacg gcttgctcgg tattttccag ctgactcccc
      181 ttgaaagcgt ggtgactctc acagtgagtg gcccgacccc cccactgggg agcagtctcc
      241 aggtacatac aggtcacgtc ccccttcctt gagttctgcc tgcgccatca catgtgggca
      301 gggaagccgc aggcggaggt gtggggactg cgggctcccg ggagcgctcg gagcatcctt
      361 ctccaggcct tgggtaccat gacccggctc gcctgctaga ggggctcggc tctgcccgcc
      421 caccgcgggg cggggcgcac cctcggagcc tccgggatcg cgcgtggcag aagcgtcgcg
      481 ggctcctgcg cgctgtctcc cgggctcggg agccctatgt ccgccgcgcc accagccgcc
      541 tcctgtagtc tccaaccccg cggcgcttgc cgcagtcgcc ggcagcggat caccggcgag
      601 cgcccaggtc tggcccggcc cggtccgcgg cctccggtac cggggatcct gcggtgcctc
      661 aaggcgagag gagacctgct ttccgtctcc gggctgcgct tctgctcttg ggccacccca
      721 ttgcaacccc cacgcgcgac agctggtgat ctaacgtact cacacgccca cccttctcgg
      781 agagactgcc ccggccggaa ggcgggagtt cggctcctgc tcccacatcc ccagctgtgc
      841 ccctagccag gaaccccacc cccatcttat ggcatccccg gtggccctat tccatcccag
      901 ggctctcatc cagccccaag ctaactttca ttgactcgtc acatcagtac ccctccccaa
      961 acttcttacc cgagtactcc aggtggccct gccgtaggag gcacccctac aactcctccc
     1021 gatctcttga aatcgctgct cgatgaccta agaaccccgt tttgccaata ctactctaag
     1081 gtgcagcttc ctttctcctc ctttgccttc accctgtacc tgcagtcacc atatcccgtc
     1141 ttggtcctca acccagtccc catggttcca gagccaggcc ctgtcaacag tagcacccca
     1201 gcctggggtc ccgggccacc gcctgctccg gggggcagcg gctgggtggc tgccgcgctg
     1261 tgcgtggtca tcgtgctgac agcagccgcc aattcgctgc tgatcgtgct catttgcacg
     1321 cagcccgcgc tgcgcaacac gtctaacttc tttctggtgt cgctcttcac gtcggacttg
     1381 atggtggggt tggtggtgat gcccccagcc atgctgaacg cgctgtatgg gcgctgggtg
     1441 ttagctcgag gcctctgtct gctttggact gccttcgacg tgatgtgctg cagcgcctcc
     1501 atcctcaacc tctgcctcat cagcctggac cgctacctgc tcatcctctc gccgctgcgc
     1561 tacaagctgc gcatgacagc cccgcgagcc ctggcgctca tcctgggtgc ctggagcctc
     1621 gcggcgcttg cctccttcct acccctcttg ctgggctggc acgaactggg caaagctcga
     1681 acacctgccc ctggccagtg ccgcctattg gccagcctgc cttttgtcct cgtggcgtcc
     1741 ggcgtcacct ttttcctgcc ttcgggtgcc atctgcttca cctactgcag gatccttctg
     1801 gctgcccgca agcaggcggt gcaagtggcc tcgctcacca cgggcacggc tggccaggcc
     1861 ttggaaacct tgcaggtgcc caggacacca cgcccaggga tggagtccgc tgacagtagg
     1921 cgtctggcca ccaagcatag caggaaggcc ttgaaggcca gcctgaccct gggcatcctg
     1981 ctgggaatgt tctttgtcac ctggctgccc ttctttgtgg ccaacatagc tcaggccgtg
     2041 tgtgactgca tctccccagg cctcttcgat gtcctcacat ggctggggta ctgtaatagc
     2101 accatgaacc ctatcatcta cccgctcttt atgcgggact tcaagagggc cctgggcagg
     2161 ttcctgccat gcgtccactg tcccccggag caccgggcca gccctgcctc cccctccatg
     2221 tggacctctc acagcggtgc cagaccaggc ctcagcctgc agcaggtgct gcctctgcct
     2281 ctgccgccaa actcagattc agactccgct tcagggggca cctcgggcct gcagctcaca
     2341 gcccagcttc tgctgcctgg agaggccacc cgggaccccc cgccacccac cagggccacc
     2401 actgtggtca acttctttgt cacagactct gtggagcctg agatacggcc gcatccactc
     2461 agttcccccg tgaactgacc aggtcaagag ctggccattg gaggccacat tcccggagct
     2521 ctcagcccac tctccctgag actaggaggt ggtaggtctc ctgagagtgt gctgaattga
     2581 ggtatcctca gctagcccca tcttctgctg caggctcctt gacctgaggg gtagccagaa
     2641 acatctctgt ggggtactcc agtgcaatgt tgcttgtgta gtgaggctgg gggcagtctc
     2701 agagctgggc catttggttc aggtcagtag gaaagcaatc tgtcctcatc cctttctctc
     2761 atggtgggtg ggaagactct agacacccca gttcctgact gacccaatcc tgttatccaa
     2821 agtgccatct atgggtttat tggggttctc ataggccttg gggagcttat tcgaagtgcc
     2881 cgcccctctg cagatggcct cagtcaacat cgtctgttca cgagcattcc taagtatgca
     2941 tttgctgaac ttccagacct gccagcccct aggatggggg ttgcaacact aaagtgcacc
     3001 tgagactgga ggccaggtag ctgggaatgt gaccccttgc tcaactgtat acagcatttc
     3061 tggggcttgg gacaggtctc aagggggagt aggagtgatc gcaccttatt aagacaatgt
     3121 gaacggtgtg cccagcacct gtgaggggtc agtgcgtggt gaattcttgt tgttttaacc
     3181 cctggtcagc caggttctgg ctctggtaga aggctagcaa gtgttcctcc ctccttcccc
     3241 cagccttctc tccattccat cttctctctc tttgtttggt tttgtttgtc ctaggctctc
     3301 aagtaacccc tgcttcccta tgtggccaag gatgaccctg aacttctgat cctcctgcct
     3361 ctacctccca tgtgctagga tcacagagat gtgctacaca ccaggttacg tggtgctggg
     3421 ggtggaactc agggcttcat gcattctggg aaagcactct gtcaatgaag ctgtgttccc
     3481 aggaccccct gttttctgtt aggacagcct cacacatact aggcaagtgc tctccattag
     3541 gtcacatctc agtcccattt ttctattgca gcccagattg ggctcccagc ctccttgctt
     3601 tgctgggtgg ggaccctacc attcagggac tctttccagt ctcatcctgt ccttctgcct
     3661 ctaaaggccc aggggatggt gacagatcct gtgcaagctt aagtgtgggt ttcctccgcc
     3721 ccagcttccc ccagaggaag cagctgatgg aggcagaaca gcccttcatc ctgcctcctt
     3781 ttggtccttc ctagggtcat tgaaagaaag gacagctgct tgggtgggca gagtacagcc
     3841 aaagagggat gtttgtccct ggcttggggg tgaagccaca gacaggcagt tgggctctgg
     3901 tctggcacag gacttgcatt tgtaggtaag gtcaggggac tcttggctcc atgcttctct
     3961 acattgaatt cctctttagc atcaggtctt tctttgagcc cttgttccat caacccaggc
     4021 tcctaggctc tcagtgtgac tcgggagctc tccttggtgc tgactgtgct caactggtcc
     4081 ctggaagcag ggctctggtg cttctggctt tctctgccac taggcttgcc tgagggactc
     4141 aataaacaga agctgaagga a
//
