LOCUS       XM_039103303             462 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus hydroxyacyl-thioester dehydratase type
            2 (Htd2), mRNA.
ACCESSION   XM_039103303
VERSION     XM_039103303.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                JAXUCZ010000002.1  107151876-107151914
            40-41               "NN"               1-2
            42-138              JAXUCZ010000002.1  107151915-107152011
            139-168             JAXUCZ010000002.1  107152013-107152042
            169-462             JAXUCZ010000002.1  107152044-107152337
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..462
                     /gene="Htd2"
                     /note="hydroxyacyl-thioester dehydratase type 2; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases
                     in 2 codons; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:120100570"
                     /db_xref="RGD:41186814"
     CDS             1..462
                     /gene="Htd2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: hydroxyacyl-thioester
                     dehydratase type 2, mitochondrial"
                     /protein_id="XP_038959231.1"
                     /db_xref="GeneID:120100570"
                     /db_xref="RGD:41186814"
                     /translation="MWSGLQKRLWQHHXGPNFSLYIHEIWRRAELSRAFTHWDVATEL
                     IMDINPLHLSEDFEKHIKFRKIILHGASVSGLISAFLGTKMLGSGCVFLSQEFKFPVP
                     LYIGEVVLASAEVERLKQSVAVVAVSCCVIESRKKVMESWVKVMFPGAPRS"
ORIGIN      
        1 atgtggagtg ggcttcagaa gagactgtgg caacatcacn ntggtcccaa tttttcacta
       61 tatatacatg aaatttggag acgagcagag ctcagcagag ccttcacaca ctgggatgtg
      121 gctacagagt taattatgga tatcaatcct ttgcacttaa gtgaagactt tgaaaaacac
      181 atcaagttta gaaagataat tttgcatgga gcttcggtaa gtggacttat ttcagctttt
      241 ctgggcacaa aaatgcttgg gtcaggctgt gtgtttcttt cccaggaatt taaattccca
      301 gttcctttat atattggaga agtggtttta gcatcggcag aagtggaaag gttgaagcag
      361 tctgttgctg ttgttgcagt gtcctgttgt gtaatagaaa gtaggaagaa agttatggaa
      421 agctgggtta aagttatgtt cccaggagct cctagatcct ga
//
