LOCUS       NM_001108259            2911 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus HIV-1 Tat specific factor 1 (Htatsf1), mRNA.
ACCESSION   NM_001108259 XM_001058638 XM_229199
VERSION     NM_001108259.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474106.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001058638.1, XM_229199.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq36"
     gene            1..2911
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /note="HIV-1 Tat specific factor 1"
                     /db_xref="GeneID:317612"
                     /db_xref="RGD:1563377"
     exon            1..202
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            203..444
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     CDS             259..2589
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /note="HIV TAT specific factor 1; HIV Tat-specific factor
                     1"
                     /codon_start=1
                     /product="17S U2 SnRNP complex component HTATSF1"
                     /protein_id="NP_001101729.1"
                     /db_xref="GeneID:317612"
                     /db_xref="RGD:1563377"
                     /translation="MSGSNLSGNDEFDEQLRMQELYGDPKEGDTQNEPSGETDSLGQP
                     PDDTPYEWDLDKKAWFPKITEDFIASYQANYGFSGDGAPSSTGNVQDANTKTVEEPPQ
                     KEIPETTDSKKRGEKRKAESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIM
                     RDPQTEEFKVKLYKDDQGNLKGDGLCCYLKKESVELALKLLDEDEIRGYKLHVEVAQF
                     QLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHERVVILKNMFHPMD
                     FEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADNCIQTLDG
                     RWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNAPEANRGLQRMDSICGSE
                     RPGPSRVRHFSEHPSMSNMGAQEATTGMAFEETIDENKFEKAEDDGGESEGDASEKDA
                     KEGESDGDYPERESDEGCSKRQCEEGCPDRESGEGCSKRESGEGCPERELELEEGNPK
                     KESQENGPERESKKKGKENYEKNGLAKESEDNDLNRESEGEDSPKKESEEDDSERESE
                     EDSSEKQSENGSDKELEENGVKKDFDQDASDKEFPENVEKESEENETDKSEFDEGSER
                     VLGEEGSEREFEEDSDEKEEEEDDDEEKEVVYERVFEDDSDDFEEEEEAYEKECEDAD
                     EKEEDDDVDEKVFDDSDEKEDEEDTDVRKDDDASDKVFEDNSNEKLFNEEEGPNEKLF
                     DDSDERGTVGNVKEDGSQSTDSSFALSSSDDDGDEV"
     exon            445..625
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            626..673
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            674..828
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            829..992
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1092
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1182
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1320
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..2911
                     /gene="Htatsf1"
                     /gene_synonym="RGD1563377"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtcgagcga tccttacgtc gccacgcgcg gacaatggcg accgcatcag tctgaggcgg
       61 acttcgttct caaatagttg cctgacgtgg cggaggaagc tgtagtgccc ccggagccag
      121 ccgcggcggt aaccgcgcgc ttgcgcgctt ccgcctcgcc ctagacctag cggtggcgtt
      181 gagaccccgc ggagtccgcc agcgcccttt tggcctcttc acttctctga ccgttgtgtc
      241 cgggactacg tgagaaccat gagtggcagc aacttgagcg ggaacgatga atttgatgag
      301 cagttgcgaa tgcaagaatt gtacggagac cccaaggaag gtgacaccca gaatgagccc
      361 tctggagaaa ctgattcttt gggacaacca ccagatgaca ctccctacga gtgggacctt
      421 gataagaagg cttggttccc taagatcacc gaagatttca ttgcttcgta tcaggccaac
      481 tacggctttt ctggtgatgg tgcacccagc tctactggga atgtccagga cgccaacact
      541 aagactgtag aagagccgcc acagaaagaa atcccggaaa ccactgactc caaaaagagg
      601 ggagaaaaga gaaaggctga atctggatgg ttccatgttg aagaagacag aaatacaaat
      661 gtatatgtgt caggtctccc tccagacatc acagtggatg aatttataca gcttatgtcc
      721 aaatttggta ttattatgag ggatcctcag actgaagaat ttaaggtcaa actttacaaa
      781 gatgatcaag gaaatcttaa aggagatgga ctttgctgtt atctaaagaa agaatctgtg
      841 gaacttgcat taaaactttt ggatgaagat gaaattagag gctacaaatt gcatgtggag
      901 gtggcacagt tccagctgaa gggggaatac gatgcctcaa agaagaagaa gaagtgcaaa
      961 gactataaga agaagctgtc tctgcagcag aagcagttgg attggagacc tgagagacga
     1021 gctgggccaa accggctgcg ccatgaacga gttgtcattc tcaaaaatat gtttcacccc
     1081 atggattttg aggatgatcc attggtgctg aatgaaatca gagaggatct tcgagtagaa
     1141 tgttcaaagt ttgggcagat taggaagctc cttctgtttg atagacaccc agatggtgtg
     1201 gcctctgtgt ccttcagaga accagaggag gctgataatt gtattcagac tctggatgga
     1261 aggtggtttg gtggccgtca gatcactgct caagcctggg atgggactac agattatcag
     1321 gtggaggaga cctcaagaga aagagaggaa aggctaagag gctgggaggc attcctcaat
     1381 gctcctgagg ccaacagagg ccttcagcgt atggattcca tctgcggttc agaaaggcca
     1441 gggccttcca gagtgaggca tttttcagag cacccaagta tgtctaacat gggtgctcag
     1501 gaagctacga ctggaatggc gtttgaagaa actatcgatg aaaataagtt tgaaaaggca
     1561 gaagatgatg ggggagagtc tgaaggagat gcttctgaaa aagatgctaa agaaggtgag
     1621 tccgatggag actaccctga gagagagagt gatgaaggct gctccaagag acagtgtgaa
     1681 gagggctgcc ctgatagaga gagtggagaa ggctgctcca agagagagag tggagaaggc
     1741 tgtcctgaga gggagcttga gctagaagag ggtaatccta aaaaggagtc tcaggagaat
     1801 ggccctgaaa gagaatctaa gaagaaaggt aaagagaatt atgaaaagaa tggccttgca
     1861 aaagaatctg aagacaatga cctcaacaga gagtccgaag gggaagatag ccccaagaaa
     1921 gaatcagaag aggatgactc agagagggaa tctgaggaag acagctcaga aaagcaatct
     1981 gaaaatggct ctgacaaaga actagaagaa aatggtgtga aaaaagattt tgaccaggat
     2041 gcctctgaca aggagttccc agaaaatgtt gagaaagagt cagaagaaaa tgagactgac
     2101 aagtcagaat ttgatgaagg ctctgaaaga gtgttaggtg aggaaggctc tgagagagaa
     2161 tttgaggaag actcagatga aaaggaggag gaggaagatg atgatgaaga gaaagaggtc
     2221 gtatatgaaa gagtttttga ggatgattct gatgacttcg aggaggaaga agaagcatat
     2281 gaaaaggagt gtgaagatgc tgatgagaaa gaggaagacg atgatgttga tgaaaaggtc
     2341 tttgatgact cggatgagaa ggaggatgaa gaagacacag atgtaaggaa agatgacgat
     2401 gctagtgaca aggtattcga agacaattcc aatgagaagt tgtttaatga ggaagaaggt
     2461 cccaatgaga agttgtttga tgattctgat gaaagaggga ctgtggggaa tgtgaaggaa
     2521 gatgggtctc aatccacaga cagcagcttt gccctcagta gtagtgatga tgatggtgat
     2581 gaagtgtaat cttttccact tgcttcttag agagagccct gtatctccat ttgcccatgc
     2641 ttcagggtca atagtagtgt tacatcaata tgtgcttagt ggtaggaagc catcagacta
     2701 atgtctcgaa ggtttttgtt ctcacctgta cccatggatt taaatgttta ttggttcttc
     2761 agttaaaact tcatagttac catgcaagta aactggatac ctctcatttt gttggatttg
     2821 ttaattgcat gcaaaagcat atttttaaag tattctaatt ggagtttgtg atattcagaa
     2881 ataaagatta aattggtaat atgcagagct g
//
